Wall clock time and date at job start Tue Mar 31 2020 06:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46716 * 2 1 4 4 C 1.52992 * 109.46961 * 119.99630 * 2 1 3 5 5 C 1.53002 * 109.47106 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47128 * 300.00123 * 5 4 2 7 7 C 1.52997 * 109.46978 * 59.99726 * 6 5 4 8 8 C 1.52997 * 109.47317 * 240.00091 * 2 1 3 9 9 H 1.09002 * 109.47153 * 299.99641 * 8 2 1 10 10 N 1.46505 * 109.47212 * 59.99649 * 8 2 1 11 11 C 1.46498 * 119.99673 * 60.00290 * 10 8 2 12 12 C 1.34768 * 119.99967 * 240.00033 * 10 8 2 13 13 O 1.21586 * 120.00451 * 359.97438 * 12 10 8 14 14 N 1.34776 * 119.99736 * 180.02562 * 12 10 8 15 15 C 1.46505 * 120.00011 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47455 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47350 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.47300 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99479 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99903 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00547 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99796 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47332 * 90.00398 * 22 20 18 24 24 H 1.48499 * 109.47256 * 210.00221 * 22 20 18 25 25 H 1.48504 * 109.47191 * 330.00178 * 22 20 18 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 299.99918 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00641 * 1 2 3 29 29 H 1.09002 * 109.47103 * 60.00608 * 4 2 1 30 30 H 1.08996 * 109.47747 * 300.00196 * 4 2 1 31 31 H 1.08996 * 109.47407 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.47596 * 60.00070 * 5 4 2 33 33 H 1.09002 * 109.47097 * 299.99925 * 6 5 4 34 34 H 1.08998 * 109.47844 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47140 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47497 * 60.00450 * 7 6 5 37 37 H 1.08992 * 109.47421 * 89.99857 * 11 10 8 38 38 H 1.09007 * 109.46720 * 209.99867 * 11 10 8 39 39 H 1.09003 * 109.47218 * 329.99648 * 11 10 8 40 40 H 0.96993 * 120.00472 * 359.97438 * 14 12 10 41 41 H 1.08995 * 109.46995 * 300.00262 * 15 14 12 42 42 H 1.09009 * 109.46934 * 59.99680 * 15 14 12 43 43 H 1.08999 * 109.47175 * 300.00446 * 16 15 14 44 44 H 1.09009 * 109.46886 * 60.00171 * 16 15 14 45 45 H 1.09006 * 109.46961 * 300.00242 * 17 16 15 46 46 H 1.08998 * 109.47390 * 59.99932 * 17 16 15 47 47 H 0.96997 * 120.00704 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2492 5 6 3.5699 -0.7206 1.2496 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7204 -1.2489 8 6 2.0400 -0.7212 -1.2492 9 1 1.6768 -1.7489 -1.2492 10 7 1.5516 -0.0306 -2.4454 11 6 1.9056 1.3719 -2.6773 12 6 0.7769 -0.6857 -3.3325 13 8 0.4836 -1.8499 -3.1404 14 7 0.3281 -0.0505 -4.4332 15 6 -0.5137 -0.7627 -5.3979 16 6 -0.8835 0.1794 -6.5454 17 6 -1.7631 -0.5642 -7.5524 18 6 -2.1268 0.3636 -8.6830 19 1 -1.7662 1.3816 -8.6833 20 6 -2.9189 -0.0876 -9.7173 21 7 -3.3576 -1.3275 -9.7172 22 14 -3.3703 1.0625 -11.1183 23 1 -2.3464 0.9638 -12.1894 24 1 -4.6970 0.6800 -11.6649 25 1 -3.4264 2.4583 -10.6143 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.6767 -1.7488 1.2492 30 1 1.6766 -0.2074 2.1392 31 1 3.9333 -1.2347 2.1393 32 1 3.9330 0.3072 1.2498 33 1 3.7175 -2.4694 0.0002 34 1 5.1705 -1.4416 0.0007 35 1 3.9338 -1.2342 -2.1388 36 1 3.9334 0.3074 -1.2488 37 1 2.8324 1.4232 -3.2485 38 1 1.1070 1.8606 -3.2357 39 1 2.0404 1.8756 -1.7200 40 1 0.5623 0.8781 -4.5868 41 1 0.0315 -1.6200 -5.7925 42 1 -1.4223 -1.1063 -4.9032 43 1 -1.4289 1.0365 -6.1504 44 1 0.0249 0.5233 -7.0401 45 1 -1.2180 -1.4216 -7.9475 46 1 -2.6713 -0.9078 -7.0575 47 1 -3.9152 -1.6448 -10.4446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171449136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:33 Heat of formation + Delta-G solvation = -63.970386 kcal Electronic energy + Delta-G solvation = -22726.672639 eV Core-core repulsion = 19522.064560 eV Total energy + Delta-G solvation = -3204.608079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52566 -38.58736 -35.41929 -35.00344 -33.26883 -32.71929 -31.25934 -29.89565 -27.15909 -26.84589 -25.97507 -23.39294 -22.37875 -21.51892 -20.62931 -20.02547 -19.35569 -17.81958 -16.65368 -16.21552 -15.78507 -15.09510 -14.81317 -14.58803 -14.50474 -14.35363 -14.19789 -13.62110 -13.39260 -13.06489 -13.04764 -12.59176 -12.45542 -12.22155 -12.11177 -11.80280 -11.76861 -11.65992 -11.37276 -11.13384 -10.89511 -10.73412 -10.68131 -10.58951 -10.53460 -10.45398 -9.94887 -9.83756 -9.41125 -9.10728 -8.85244 -8.41355 -8.35813 -6.00422 -4.03515 2.74093 3.31464 3.37783 3.39553 3.40552 4.09924 4.37204 4.45585 4.48968 4.60152 4.81750 4.87522 4.92915 5.12236 5.18534 5.19850 5.24345 5.34905 5.35267 5.43064 5.51411 5.55031 5.69173 5.70650 5.76811 5.78196 5.84628 5.86367 5.89365 5.94033 6.06248 6.12272 6.21547 6.23925 6.49517 6.60020 6.65222 6.86344 7.05361 7.09364 7.65584 7.78758 7.98640 8.13357 8.39609 8.80115 9.03221 9.60527 11.10902 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041949 B = 0.002634 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.322750 B =10629.062096 C =10654.686884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.127 4.127 8 C 0.162 3.838 9 H 0.102 0.898 10 N -0.630 5.630 11 C 0.078 3.922 12 C 0.703 3.297 13 O -0.592 6.592 14 N -0.742 5.742 15 C 0.134 3.866 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.393 0.607 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.671 5.152 22.423 27.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.166 4.166 8 C 0.058 3.942 9 H 0.120 0.880 10 N -0.367 5.367 11 C -0.066 4.066 12 C 0.404 3.596 13 O -0.470 6.470 14 N -0.397 5.397 15 C 0.011 3.989 16 C -0.158 4.158 17 C -0.014 4.014 18 C -0.560 4.560 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.228 0.772 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.038 0.962 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.310 4.161 22.418 26.920 hybrid contribution -0.167 1.169 -0.996 1.545 sum 14.144 5.330 21.422 26.217 Atomic orbital electron populations 1.21751 0.94658 1.02263 1.01356 1.21470 0.96285 0.99708 0.94436 0.91164 1.21571 0.95344 1.01037 0.97063 1.21561 0.95699 1.00694 0.97820 1.21500 1.00252 0.99704 0.94043 1.21902 0.95247 1.01042 0.98414 1.20968 0.92851 0.97911 0.82457 0.87993 1.47029 1.54058 1.12021 1.23628 1.21667 1.00545 0.82287 1.02071 1.15942 0.78825 0.84759 0.80077 1.90893 1.63146 1.15487 1.77490 1.45537 1.55472 1.15593 1.23142 1.21501 0.93240 0.95541 0.88620 1.21881 1.00478 0.98182 0.95235 1.19026 0.94223 0.95591 0.92516 1.21205 1.31075 0.97828 1.05897 0.92677 1.25029 0.96036 0.95129 0.98296 1.69965 1.35309 1.15419 1.32591 0.86585 0.77807 0.81075 0.82454 1.20669 1.21209 1.19917 0.92483 0.92999 0.92612 0.91622 0.91756 0.91952 0.92046 0.91662 0.91797 0.91570 0.91839 0.92836 0.91473 0.90964 0.77196 0.92012 0.92030 0.92850 0.92834 0.96257 0.96241 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.04 37.16 0.34 -1.10 16 2 C -0.10 -0.87 2.09 -90.63 -0.19 -1.05 16 3 H 0.07 0.55 6.66 -51.93 -0.35 0.21 16 4 C -0.11 -0.83 5.20 -26.73 -0.14 -0.97 16 5 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 6 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 7 C -0.13 -1.12 5.20 -26.71 -0.14 -1.26 16 8 C 0.16 1.73 1.97 -67.91 -0.13 1.60 16 9 H 0.10 1.38 6.90 -51.93 -0.36 1.02 16 10 N -0.63 -7.45 2.00 -179.64 -0.36 -7.81 16 11 C 0.08 0.65 9.26 59.85 0.55 1.21 16 12 C 0.70 11.28 8.28 -86.93 -0.72 10.56 16 13 O -0.59 -11.91 15.67 5.29 0.08 -11.83 16 14 N -0.74 -11.37 5.42 -65.22 -0.35 -11.73 16 15 C 0.13 2.47 5.67 -4.04 -0.02 2.45 16 16 C -0.12 -2.39 5.27 -26.74 -0.14 -2.53 16 17 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 18 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 22 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.64 7.60 -51.93 -0.39 0.25 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.53 6.36 -51.92 -0.33 0.20 16 39 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 40 H 0.39 4.94 6.20 -40.82 -0.25 4.69 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.03 8.14 -51.92 -0.42 0.60 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -32.51 364.75 -9.60 -42.11 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -8.72 Total: -0.49 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -1.46 Total: -6.04 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.02 Total: -45.82 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.51 -9.60 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171449136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.859 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds