Wall clock time and date at job start Tue Mar 31 2020 06:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46716 * 2 1 4 4 C 1.52992 * 109.46961 * 119.99630 * 2 1 3 5 5 C 1.53002 * 109.47106 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47128 * 300.00123 * 5 4 2 7 7 C 1.52997 * 109.46978 * 59.99726 * 6 5 4 8 8 C 1.52997 * 109.47317 * 240.00091 * 2 1 3 9 9 H 1.09002 * 109.47153 * 299.99641 * 8 2 1 10 10 N 1.46505 * 109.47212 * 59.99649 * 8 2 1 11 11 C 1.46498 * 119.99673 * 60.00290 * 10 8 2 12 12 C 1.34768 * 119.99967 * 240.00033 * 10 8 2 13 13 O 1.21586 * 120.00451 * 359.97438 * 12 10 8 14 14 N 1.34776 * 119.99736 * 180.02562 * 12 10 8 15 15 C 1.46505 * 120.00011 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47455 * 179.97438 * 15 14 12 17 17 C 1.52996 * 109.47350 * 180.02562 * 16 15 14 18 18 C 1.50704 * 109.47300 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99479 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99903 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00547 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99796 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47332 * 90.00398 * 22 20 18 24 24 H 1.48499 * 109.47256 * 210.00221 * 22 20 18 25 25 H 1.48504 * 109.47191 * 330.00178 * 22 20 18 26 26 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47486 * 299.99918 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00641 * 1 2 3 29 29 H 1.09002 * 109.47103 * 60.00608 * 4 2 1 30 30 H 1.08996 * 109.47747 * 300.00196 * 4 2 1 31 31 H 1.08996 * 109.47407 * 180.02562 * 5 4 2 32 32 H 1.09002 * 109.47596 * 60.00070 * 5 4 2 33 33 H 1.09002 * 109.47097 * 299.99925 * 6 5 4 34 34 H 1.08998 * 109.47844 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47140 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47497 * 60.00450 * 7 6 5 37 37 H 1.08992 * 109.47421 * 89.99857 * 11 10 8 38 38 H 1.09007 * 109.46720 * 209.99867 * 11 10 8 39 39 H 1.09003 * 109.47218 * 329.99648 * 11 10 8 40 40 H 0.96993 * 120.00472 * 359.97438 * 14 12 10 41 41 H 1.08995 * 109.46995 * 300.00262 * 15 14 12 42 42 H 1.09009 * 109.46934 * 59.99680 * 15 14 12 43 43 H 1.08999 * 109.47175 * 300.00446 * 16 15 14 44 44 H 1.09009 * 109.46886 * 60.00171 * 16 15 14 45 45 H 1.09006 * 109.46961 * 300.00242 * 17 16 15 46 46 H 1.08998 * 109.47390 * 59.99932 * 17 16 15 47 47 H 0.96997 * 120.00704 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2492 5 6 3.5699 -0.7206 1.2496 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7204 -1.2489 8 6 2.0400 -0.7212 -1.2492 9 1 1.6768 -1.7489 -1.2492 10 7 1.5516 -0.0306 -2.4454 11 6 1.9056 1.3719 -2.6773 12 6 0.7769 -0.6857 -3.3325 13 8 0.4836 -1.8499 -3.1404 14 7 0.3281 -0.0505 -4.4332 15 6 -0.5137 -0.7627 -5.3979 16 6 -0.8835 0.1794 -6.5454 17 6 -1.7631 -0.5642 -7.5524 18 6 -2.1268 0.3636 -8.6830 19 1 -1.7662 1.3816 -8.6833 20 6 -2.9189 -0.0876 -9.7173 21 7 -3.3576 -1.3275 -9.7172 22 14 -3.3703 1.0625 -11.1183 23 1 -2.3464 0.9638 -12.1894 24 1 -4.6970 0.6800 -11.6649 25 1 -3.4264 2.4583 -10.6143 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.6767 -1.7488 1.2492 30 1 1.6766 -0.2074 2.1392 31 1 3.9333 -1.2347 2.1393 32 1 3.9330 0.3072 1.2498 33 1 3.7175 -2.4694 0.0002 34 1 5.1705 -1.4416 0.0007 35 1 3.9338 -1.2342 -2.1388 36 1 3.9334 0.3074 -1.2488 37 1 2.8324 1.4232 -3.2485 38 1 1.1070 1.8606 -3.2357 39 1 2.0404 1.8756 -1.7200 40 1 0.5623 0.8781 -4.5868 41 1 0.0315 -1.6200 -5.7925 42 1 -1.4223 -1.1063 -4.9032 43 1 -1.4289 1.0365 -6.1504 44 1 0.0249 0.5233 -7.0401 45 1 -1.2180 -1.4216 -7.9475 46 1 -2.6713 -0.9078 -7.0575 47 1 -3.9152 -1.6448 -10.4446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171449136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:32 Heat of formation + Delta-G solvation = -82.592916 kcal Electronic energy + Delta-G solvation = -22727.480172 eV Core-core repulsion = 19522.064560 eV Total energy + Delta-G solvation = -3205.415613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58588 -39.54662 -36.96950 -36.05632 -35.14601 -33.47121 -32.95353 -30.79378 -28.55114 -27.89729 -27.00223 -25.02397 -23.37915 -22.31716 -22.25520 -21.04122 -20.29783 -19.01183 -18.44723 -17.59309 -16.99516 -16.52793 -16.01271 -15.92630 -15.52864 -15.36755 -15.08421 -14.73491 -14.46679 -14.28287 -13.84643 -13.80405 -13.69976 -13.46759 -13.31528 -13.17091 -12.81304 -12.75046 -12.52306 -12.49440 -12.36382 -12.07141 -11.79358 -11.68346 -11.60803 -11.41311 -11.27136 -11.23554 -11.17853 -10.99555 -10.55565 -10.20518 -9.43051 -8.19353 -6.31144 1.41643 1.43366 1.54206 1.64113 2.12834 2.41963 3.01048 3.14318 3.63866 3.80659 3.94116 4.14036 4.18156 4.19165 4.21660 4.26345 4.46061 4.49734 4.52160 4.54531 4.56539 4.68880 4.75115 4.82227 4.88732 4.94357 4.95591 4.99506 5.07935 5.13602 5.16064 5.19241 5.26293 5.30286 5.34843 5.42781 5.46579 5.53390 5.56055 5.63631 5.70194 5.83826 5.98119 6.22208 6.85917 6.98640 7.38466 7.56150 8.92949 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041949 B = 0.002634 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.322750 B =10629.062096 C =10654.686884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.092 0.908 4 C -0.111 4.111 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.120 4.120 8 C 0.158 3.842 9 H 0.063 0.937 10 N -0.621 5.621 11 C 0.069 3.931 12 C 0.696 3.304 13 O -0.641 6.641 14 N -0.731 5.731 15 C 0.150 3.850 16 C -0.099 4.099 17 C 0.024 3.976 18 C -0.540 4.540 19 H 0.067 0.933 20 C -0.005 4.005 21 N -0.936 5.936 22 Si 0.969 3.031 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.259 1.259 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.039 0.961 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.410 0.590 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.068 0.932 45 H -0.009 1.009 46 H -0.008 1.008 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.310 8.354 23.391 29.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.110 4.110 3 H 0.110 0.890 4 C -0.149 4.149 5 C -0.152 4.152 6 C -0.154 4.154 7 C -0.159 4.159 8 C 0.054 3.946 9 H 0.082 0.918 10 N -0.357 5.357 11 C -0.073 4.073 12 C 0.397 3.603 13 O -0.524 6.524 14 N -0.388 5.388 15 C 0.025 3.975 16 C -0.137 4.137 17 C -0.014 4.014 18 C -0.578 4.578 19 H 0.086 0.914 20 C -0.202 4.202 21 N -0.576 5.576 22 Si 0.793 3.207 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.183 1.183 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.248 0.752 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.994 7.428 23.419 29.316 hybrid contribution -0.665 0.132 -1.244 1.417 sum 15.329 7.560 22.175 27.998 Atomic orbital electron populations 1.21731 0.95923 1.00718 1.01436 1.21441 0.95086 1.00673 0.93844 0.88965 1.21574 0.96290 1.00221 0.96812 1.21540 0.94613 1.01518 0.97542 1.21511 1.01068 0.98937 0.93928 1.21848 0.93370 1.02221 0.98440 1.21078 0.94278 0.96265 0.82929 0.91835 1.47093 1.52467 1.13367 1.22745 1.21976 1.01401 0.79928 1.03974 1.16151 0.79209 0.84326 0.80581 1.90861 1.65028 1.17877 1.78591 1.45189 1.55002 1.16150 1.22504 1.21061 0.92833 0.94954 0.88664 1.21576 1.00005 0.97857 0.94224 1.18937 0.93808 0.95133 0.93485 1.21674 1.31014 0.98605 1.06516 0.91440 1.26046 0.95940 0.96803 1.01422 1.70116 1.36169 1.17619 1.33736 0.85394 0.77441 0.79189 0.78686 1.19784 1.21059 1.18338 0.94897 0.91101 0.94226 0.93086 0.90217 0.90848 0.90548 0.93076 0.90361 0.93391 0.89730 0.91342 0.90834 0.88422 0.75233 0.93758 0.93779 0.91370 0.91353 0.99034 0.99007 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.04 71.98 0.65 -2.11 16 2 C -0.09 -1.43 2.09 -10.80 -0.02 -1.45 16 3 H 0.09 1.09 6.66 -2.39 -0.02 1.07 16 4 C -0.11 -1.43 5.20 30.59 0.16 -1.27 16 5 C -0.11 -1.17 5.92 30.60 0.18 -0.98 16 6 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 7 C -0.12 -1.93 5.20 30.61 0.16 -1.77 16 8 C 0.16 3.32 1.97 45.00 0.09 3.41 16 9 H 0.06 1.84 6.90 -2.39 -0.02 1.83 16 10 N -0.62 -14.21 2.00 -840.54 -1.68 -15.88 16 11 C 0.07 0.96 9.26 127.77 1.18 2.14 16 12 C 0.70 22.75 8.28 179.06 1.48 24.23 16 13 O -0.64 -27.30 15.67 -3.99 -0.06 -27.36 16 14 N -0.73 -22.24 5.42 -478.53 -2.59 -24.83 16 15 C 0.15 5.66 5.67 86.38 0.49 6.15 16 16 C -0.10 -3.91 5.27 30.59 0.16 -3.75 16 17 C 0.02 1.28 4.97 29.85 0.15 1.43 16 18 C -0.54 -30.43 9.11 25.60 0.23 -30.19 16 19 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 20 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 21 N -0.94 -57.86 13.29 21.45 0.28 -57.57 16 22 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 25 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 26 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.04 0.89 7.60 -2.39 -0.02 0.87 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.02 7.67 -2.39 -0.02 1.00 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.95 6.36 -2.38 -0.02 0.93 16 39 H 0.10 0.89 6.43 -2.39 -0.02 0.88 16 40 H 0.41 9.58 6.20 -92.71 -0.58 9.01 16 41 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 44 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 45 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 46 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 47 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -73.40 364.75 3.88 -69.52 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.34 Total: 15.39 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 5.56 Total: -5.33 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -3.99 Total: -98.29 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.06 Total: -27.36 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -73.40 3.88 -69.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171449136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.071 kcal (2) G-P(sol) polarization free energy of solvation -73.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds