Wall clock time and date at job start Tue Mar 31 2020 06:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47126 * 2 1 4 4 C 1.52997 * 109.46677 * 239.99723 * 2 1 3 5 5 C 1.53006 * 109.46705 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47428 * 60.00211 * 5 4 2 7 7 C 1.53005 * 109.46678 * 300.00109 * 6 5 4 8 8 C 1.52994 * 109.47484 * 59.99997 * 7 6 5 9 9 H 1.09004 * 109.47128 * 59.99475 * 8 7 6 10 10 N 1.46497 * 109.47357 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99878 * 59.99894 * 10 8 7 12 12 C 1.34776 * 120.00427 * 239.99868 * 10 8 7 13 13 O 1.21590 * 119.99449 * 359.97438 * 12 10 8 14 14 N 1.34770 * 120.00072 * 180.02562 * 12 10 8 15 15 C 1.46507 * 119.99912 * 180.02562 * 14 12 10 16 16 C 1.52992 * 109.47485 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47482 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47294 * 60.00559 * 22 20 18 24 24 H 1.48503 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47431 * 300.00157 * 22 20 18 26 26 H 1.09007 * 109.47036 * 300.00436 * 1 2 3 27 27 H 1.09005 * 109.46974 * 59.99423 * 1 2 3 28 28 H 1.08991 * 109.47778 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47421 * 60.00889 * 4 2 1 30 30 H 1.08996 * 109.47569 * 300.00006 * 4 2 1 31 31 H 1.08997 * 109.47097 * 299.99636 * 5 4 2 32 32 H 1.09004 * 109.46824 * 180.02562 * 5 4 2 33 33 H 1.08990 * 109.47362 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46811 * 59.99268 * 6 5 4 35 35 H 1.09005 * 109.46843 * 299.99618 * 7 6 5 36 36 H 1.08999 * 109.46838 * 180.02562 * 7 6 5 37 37 H 1.08991 * 109.47065 * 269.99950 * 11 10 8 38 38 H 1.09000 * 109.46875 * 29.99969 * 11 10 8 39 39 H 1.08997 * 109.47024 * 149.99728 * 11 10 8 40 40 H 0.96992 * 120.00518 * 359.97438 * 14 12 10 41 41 H 1.09002 * 109.47280 * 59.99618 * 15 14 12 42 42 H 1.09001 * 109.46702 * 299.99811 * 15 14 12 43 43 H 1.09002 * 109.47103 * 59.99596 * 16 15 14 44 44 H 1.08998 * 109.46862 * 300.00408 * 16 15 14 45 45 H 1.09002 * 109.47153 * 59.99783 * 17 16 15 46 46 H 1.09001 * 109.46832 * 299.99974 * 17 16 15 47 47 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0795 -1.4435 0.0003 7 6 3.5695 -0.7221 1.2496 8 6 2.0395 -0.7216 1.2493 9 1 1.6758 -1.7492 1.2491 10 7 1.5512 -0.0315 2.4457 11 6 1.9056 1.3709 2.6784 12 6 0.7759 -0.6866 3.3324 13 8 0.4814 -1.8503 3.1391 14 7 0.3263 -0.0515 4.4328 15 6 -0.5160 -0.7638 5.3969 16 6 -0.8856 0.1778 6.5447 17 6 -1.7657 -0.5659 7.5513 18 6 -2.1292 0.3614 8.6822 19 1 -1.7690 1.3795 8.6828 20 6 -2.9227 -0.0897 9.7157 21 7 -3.3618 -1.3293 9.7147 22 14 -3.3739 1.0600 11.1171 23 1 -4.1155 2.2289 10.5793 24 1 -4.2280 0.3381 12.0941 25 1 -2.1364 1.5269 11.7923 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0275 0.0005 29 1 1.6767 -0.2075 -2.1392 30 1 1.6766 -1.7489 -1.2492 31 1 3.9337 0.3056 -1.2488 32 1 3.9332 -1.2354 -2.1391 33 1 5.1694 -1.4435 0.0008 34 1 3.7157 -2.4710 0.0001 35 1 3.9332 0.3054 1.2497 36 1 3.9328 -1.2359 2.1395 37 1 2.8323 1.4215 3.2499 38 1 2.0409 1.8750 1.7214 39 1 1.1072 1.8596 3.2367 40 1 0.5609 0.8770 4.5868 41 1 0.0291 -1.6211 5.7919 42 1 -1.4241 -1.1075 4.9017 43 1 -1.4306 1.0353 6.1501 44 1 0.0227 0.5211 7.0398 45 1 -1.2211 -1.4237 7.9460 46 1 -2.6740 -0.9089 7.0558 47 1 -3.9198 -1.6467 10.4420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171449140.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:35 Heat of formation + Delta-G solvation = -63.920142 kcal Electronic energy + Delta-G solvation = -22726.784167 eV Core-core repulsion = 19522.178267 eV Total energy + Delta-G solvation = -3204.605900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52576 -38.58732 -35.41919 -35.00260 -33.26797 -32.71932 -31.25964 -29.89647 -27.15867 -26.84509 -25.97424 -23.39136 -22.37755 -21.51963 -20.62897 -20.02529 -19.35583 -17.81974 -16.65317 -16.21269 -15.78480 -15.09458 -14.81308 -14.58797 -14.50639 -14.35362 -14.19903 -13.62033 -13.39226 -13.06552 -13.04776 -12.59151 -12.45386 -12.21463 -12.11091 -11.80270 -11.77202 -11.65896 -11.37107 -11.13425 -10.87431 -10.73357 -10.67824 -10.61450 -10.53653 -10.45469 -9.94812 -9.83381 -9.40805 -9.11802 -8.85247 -8.41360 -8.35446 -6.00204 -4.03331 2.74093 3.32795 3.37532 3.39406 3.39552 4.09913 4.37222 4.45687 4.49034 4.60142 4.81777 4.87569 4.92911 5.12268 5.18549 5.19900 5.24396 5.34939 5.35382 5.43080 5.51431 5.55110 5.69195 5.70618 5.76806 5.78239 5.84649 5.86419 5.89407 5.94043 6.06259 6.12325 6.21588 6.23990 6.49576 6.60024 6.65262 6.86356 7.05389 7.09365 7.65463 7.78887 7.98779 8.13362 8.39738 8.80113 9.03176 9.60587 11.11092 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041949 B = 0.002634 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.313846 B =10628.733566 C =10654.474890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.127 4.127 8 C 0.162 3.838 9 H 0.102 0.898 10 N -0.630 5.630 11 C 0.078 3.922 12 C 0.703 3.297 13 O -0.592 6.592 14 N -0.742 5.742 15 C 0.134 3.866 16 C -0.120 4.120 17 C 0.025 3.975 18 C -0.523 4.523 19 H 0.054 0.946 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.393 0.607 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.673 5.143 -22.401 27.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.166 4.166 8 C 0.058 3.942 9 H 0.120 0.880 10 N -0.367 5.367 11 C -0.066 4.066 12 C 0.404 3.596 13 O -0.470 6.470 14 N -0.397 5.397 15 C 0.011 3.989 16 C -0.158 4.158 17 C -0.013 4.013 18 C -0.561 4.561 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.228 0.772 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.313 4.147 -22.392 26.897 hybrid contribution -0.168 1.184 0.989 1.552 sum 14.145 5.331 -21.404 26.203 Atomic orbital electron populations 1.21752 0.94658 1.02265 1.01356 1.21471 0.96286 0.99703 0.94432 0.91162 1.21573 0.95345 1.01036 0.97063 1.21562 0.95702 1.00695 0.97818 1.21500 1.00252 0.99702 0.94037 1.21896 0.95253 1.01045 0.98418 1.20957 0.92855 0.97915 0.82458 0.87998 1.47031 1.54047 1.12041 1.23620 1.21666 1.00541 0.82296 1.02067 1.15943 0.78826 0.84755 0.80080 1.90894 1.63131 1.15536 1.77458 1.45535 1.55412 1.15601 1.23191 1.21501 0.93233 0.95542 0.88626 1.21880 1.00483 0.98187 0.95230 1.19019 0.94209 0.95583 0.92502 1.21170 1.31126 0.97814 1.05989 0.92728 1.25030 0.96025 0.95128 0.98286 1.69957 1.35200 1.15402 1.32720 0.86643 0.78422 0.80835 0.81984 1.20258 1.21275 1.20260 0.92618 0.92996 0.92479 0.91750 0.91625 0.92053 0.91952 0.91795 0.91654 0.91848 0.91569 0.92837 0.90965 0.91474 0.77195 0.92019 0.92020 0.92856 0.92831 0.96255 0.96255 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.03 37.16 0.34 -1.10 16 2 C -0.10 -0.86 2.09 -90.62 -0.19 -1.05 16 3 H 0.07 0.55 6.67 -51.93 -0.35 0.21 16 4 C -0.11 -0.83 5.20 -26.73 -0.14 -0.97 16 5 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 6 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 7 C -0.13 -1.12 5.20 -26.73 -0.14 -1.26 16 8 C 0.16 1.73 1.97 -67.93 -0.13 1.60 16 9 H 0.10 1.38 6.90 -51.93 -0.36 1.02 16 10 N -0.63 -7.45 2.00 -179.67 -0.36 -7.81 16 11 C 0.08 0.65 9.26 59.85 0.55 1.21 16 12 C 0.70 11.28 8.28 -86.92 -0.72 10.56 16 13 O -0.59 -11.91 15.67 5.29 0.08 -11.83 16 14 N -0.74 -11.38 5.42 -65.22 -0.35 -11.73 16 15 C 0.13 2.47 5.67 -4.04 -0.02 2.45 16 16 C -0.12 -2.39 5.27 -26.74 -0.14 -2.53 16 17 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 18 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 19 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 22 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 H 0.05 0.64 7.60 -51.93 -0.39 0.25 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.48 6.43 -51.93 -0.33 0.15 16 39 H 0.07 0.53 6.36 -51.93 -0.33 0.20 16 40 H 0.39 4.95 6.20 -40.82 -0.25 4.69 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 364.76 15.07 5.50 5.50 Total: -1.00 -32.49 364.76 -9.60 -42.09 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -8.72 Total: -0.45 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -1.46 Total: -6.05 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.02 Total: -45.83 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.49 -9.60 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171449140.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.832 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds