Wall clock time and date at job start Tue Mar 31 2020 06:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46781 * 2 1 4 4 C 1.53002 * 109.47023 * 119.99624 * 2 1 3 5 5 C 1.53000 * 109.46751 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47167 * 299.99912 * 5 4 2 7 7 C 1.52995 * 109.46776 * 60.00330 * 6 5 4 8 8 C 1.52996 * 109.47366 * 299.99389 * 7 6 5 9 9 H 1.09003 * 109.47260 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47581 * 300.00435 * 8 7 6 11 11 C 1.46500 * 119.99533 * 7.24868 * 10 8 7 12 12 C 1.34769 * 120.00045 * 187.24867 * 10 8 7 13 13 O 1.21586 * 120.00545 * 7.26426 * 12 10 8 14 14 N 1.34779 * 119.99462 * 187.26677 * 12 10 8 15 15 C 1.46511 * 119.99682 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.46824 * 179.97438 * 15 14 12 17 17 C 1.52993 * 109.46604 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.47135 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99672 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00235 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00073 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99988 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47083 * 89.99871 * 22 20 18 24 24 H 1.48496 * 109.46986 * 209.99744 * 22 20 18 25 25 H 1.48496 * 109.46967 * 329.99848 * 22 20 18 26 26 H 1.09000 * 109.47079 * 310.22976 * 1 2 3 27 27 H 1.09004 * 109.47286 * 190.22970 * 1 2 3 28 28 H 1.08995 * 109.47214 * 70.22392 * 1 2 3 29 29 H 1.08998 * 109.47321 * 299.99815 * 4 2 1 30 30 H 1.09000 * 109.47002 * 59.99975 * 4 2 1 31 31 H 1.09000 * 109.47229 * 60.00310 * 5 4 2 32 32 H 1.09003 * 109.46897 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.46560 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.47085 * 299.99859 * 6 5 4 35 35 H 1.09000 * 109.47187 * 59.99868 * 7 6 5 36 36 H 1.09005 * 109.46707 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.47181 * 89.16985 * 11 10 8 38 38 H 1.08994 * 109.46896 * 209.16898 * 11 10 8 39 39 H 1.09002 * 109.47266 * 329.16903 * 11 10 8 40 40 H 0.96993 * 120.00235 * 0.02562 * 14 12 10 41 41 H 1.08997 * 109.46674 * 300.00001 * 15 14 12 42 42 H 1.09000 * 109.46894 * 59.99556 * 15 14 12 43 43 H 1.08994 * 109.47108 * 299.99575 * 16 15 14 44 44 H 1.08997 * 109.47140 * 60.00115 * 16 15 14 45 45 H 1.08999 * 109.47753 * 299.99968 * 17 16 15 46 46 H 1.09005 * 109.47768 * 60.00057 * 17 16 15 47 47 H 0.97001 * 120.00159 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2489 6 6 4.0795 -1.4434 -0.0003 7 6 3.5695 -0.7222 -1.2495 8 6 2.0395 -0.7217 -1.2492 9 1 1.6761 -0.2083 -2.1394 10 7 1.5506 -2.1027 -1.2488 11 6 2.4927 -3.2131 -1.0887 12 6 0.2343 -2.3516 -1.3958 13 8 -0.5303 -1.4440 -1.6603 14 7 -0.2346 -3.6068 -1.2496 15 6 -1.6655 -3.8775 -1.4100 16 6 -1.9296 -5.3691 -1.1945 17 6 -3.4239 -5.6516 -1.3614 18 6 -3.6842 -7.1207 -1.1486 19 1 -2.8657 -7.7861 -0.9171 20 6 -4.9672 -7.6151 -1.2495 21 7 -5.9640 -6.8048 -1.5309 22 14 -5.2897 -9.4363 -0.9864 23 1 -5.5721 -9.6866 0.4498 24 1 -6.4588 -9.8546 -1.8009 25 1 -4.0947 -10.2152 -1.3990 26 1 -0.3633 0.6637 0.7846 27 1 -0.3634 -1.0113 0.1825 28 1 -0.3633 0.3477 -0.9670 29 1 1.6767 -0.2073 2.1393 30 1 1.6767 -1.7488 1.2494 31 1 3.9337 0.3058 1.2487 32 1 3.9334 -1.2359 2.1387 33 1 5.1695 -1.4433 -0.0007 34 1 3.7158 -2.4709 0.0001 35 1 3.9332 0.3053 -1.2497 36 1 3.9328 -1.2361 -2.1394 37 1 2.6156 -3.4354 -0.0287 38 1 2.1070 -4.0938 -1.6022 39 1 3.4565 -2.9364 -1.5160 40 1 0.3753 -4.3307 -1.0382 41 1 -2.2289 -3.2989 -0.6780 42 1 -1.9783 -3.5948 -2.4151 43 1 -1.3661 -5.9472 -1.9269 44 1 -1.6166 -5.6520 -0.1895 45 1 -3.9871 -5.0734 -0.6288 46 1 -3.7373 -5.3685 -2.3663 47 1 -6.8667 -7.1527 -1.6022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171449146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:38 Heat of formation + Delta-G solvation = -17.386690 kcal Electronic energy + Delta-G solvation = -23404.402495 eV Core-core repulsion = 20201.814437 eV Total energy + Delta-G solvation = -3202.588059 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.08902 -38.43058 -35.43456 -34.72900 -33.24297 -32.70687 -31.26224 -30.07942 -27.62119 -26.64970 -25.58646 -23.30141 -22.27779 -21.54366 -20.56484 -20.46924 -19.01198 -17.73659 -16.70359 -16.35817 -15.91076 -15.12817 -14.78686 -14.57236 -14.50730 -14.29630 -14.04512 -13.84921 -13.42254 -13.02917 -12.59657 -12.45036 -12.24038 -12.13125 -12.06243 -11.83287 -11.72020 -11.53797 -11.34033 -10.90447 -10.74055 -10.68729 -10.56316 -10.43693 -10.32476 -10.12800 -9.82131 -9.66974 -9.36496 -9.10493 -8.56216 -8.36253 -8.35332 -6.00440 -4.03492 2.77312 3.31487 3.37831 3.40589 3.42406 4.11124 4.45316 4.49630 4.50813 4.58424 4.87301 4.95546 5.01593 5.17080 5.21391 5.27032 5.29551 5.35297 5.39116 5.46300 5.50517 5.71319 5.76096 5.78002 5.81507 5.85165 5.93902 5.98935 6.03975 6.15143 6.22376 6.23987 6.34897 6.51956 6.62091 6.65664 6.81434 6.89933 7.07259 7.12284 7.65615 7.78831 7.98669 8.16405 8.39733 8.84899 9.03277 9.60587 11.10861 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032505 B = 0.003053 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.200671 B = 9170.397847 C = 9455.931479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.159 4.159 7 C -0.125 4.125 8 C 0.173 3.827 9 H 0.076 0.924 10 N -0.628 5.628 11 C 0.070 3.930 12 C 0.698 3.302 13 O -0.578 6.578 14 N -0.743 5.743 15 C 0.135 3.865 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.027 0.973 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.392 0.608 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.513 11.948 3.116 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 H 0.089 0.911 4 C -0.149 4.149 5 C -0.154 4.154 6 C -0.196 4.196 7 C -0.162 4.162 8 C 0.069 3.931 9 H 0.094 0.906 10 N -0.367 5.367 11 C -0.073 4.073 12 C 0.400 3.600 13 O -0.455 6.455 14 N -0.399 5.399 15 C 0.012 3.988 16 C -0.158 4.158 17 C -0.013 4.013 18 C -0.560 4.560 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.046 0.954 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.226 0.774 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 21.731 12.620 2.876 25.294 hybrid contribution 0.075 -1.353 0.326 1.394 sum 21.806 11.267 3.202 24.752 Atomic orbital electron populations 1.22295 0.93233 1.02196 1.01659 1.21580 0.97380 0.98647 0.94447 0.91093 1.21552 0.94903 1.01031 0.97449 1.21505 0.95974 1.00353 0.97573 1.22470 1.00258 1.02481 0.94367 1.21794 0.94241 1.01726 0.98485 1.20858 0.92867 0.81205 0.98146 0.90572 1.46969 1.05140 1.06401 1.78153 1.22147 0.94739 0.89622 1.00825 1.15824 0.81784 0.83467 0.78951 1.90963 1.56441 1.43112 1.55033 1.45576 1.10599 1.07690 1.76009 1.21476 0.77952 0.97947 1.01427 1.21876 1.01737 0.91607 1.00568 1.19022 0.88091 0.96669 0.97551 1.21208 0.93099 0.93603 1.48117 0.92684 1.25028 0.96343 0.97802 0.95296 1.69967 0.99764 1.34771 1.48771 0.86588 0.77814 0.85441 0.78108 1.20672 1.21216 1.19902 0.95406 0.91840 0.90472 0.92384 0.91935 0.92427 0.92306 0.92234 0.88487 0.90549 0.91348 0.92237 0.91858 0.89835 0.77380 0.92083 0.92074 0.92877 0.92882 0.96281 0.96267 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 7.31 37.16 0.27 -1.64 16 2 C -0.10 -1.09 2.54 -90.62 -0.23 -1.32 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -1.09 5.03 -26.73 -0.13 -1.23 16 5 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 6 C -0.16 -1.07 5.17 -26.73 -0.14 -1.21 16 7 C -0.12 -0.91 4.94 -26.74 -0.13 -1.05 16 8 C 0.17 1.80 2.60 -67.93 -0.18 1.62 16 9 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 10 N -0.63 -7.11 2.22 -180.08 -0.40 -7.51 16 11 C 0.07 0.56 7.80 59.85 0.47 1.02 16 12 C 0.70 10.60 6.56 -86.92 -0.57 10.03 16 13 O -0.58 -10.65 11.58 5.29 0.06 -10.59 16 14 N -0.74 -11.02 5.39 -65.22 -0.35 -11.37 16 15 C 0.14 2.43 5.67 -4.03 -0.02 2.41 16 16 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 17 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 18 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 22 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 1.03 5.41 -51.93 -0.28 0.75 16 28 H 0.08 1.22 6.52 -51.93 -0.34 0.88 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.69 7.21 -51.93 -0.37 0.32 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.64 3.12 -52.44 -0.16 0.48 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.46 7.21 -51.93 -0.37 0.09 16 37 H 0.06 0.43 6.39 -51.93 -0.33 0.10 16 38 H 0.06 0.49 6.64 -51.93 -0.34 0.15 16 39 H 0.08 0.53 4.97 -51.93 -0.26 0.27 16 40 H 0.39 4.83 6.39 -40.82 -0.26 4.56 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 345.49 15.07 5.21 5.21 Total: -1.00 -31.65 345.49 -9.47 -41.12 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.18 Total: 0.69 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.52 Total: -7.85 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.02 Total: -45.10 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.06 Total: -10.59 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.65 -9.47 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171449146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.731 kcal (2) G-P(sol) polarization free energy of solvation -31.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds