Wall clock time and date at job start Tue Mar 31 2020 06:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46781 * 2 1 4 4 C 1.53002 * 109.47023 * 119.99624 * 2 1 3 5 5 C 1.53000 * 109.46751 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47167 * 299.99912 * 5 4 2 7 7 C 1.52995 * 109.46776 * 60.00330 * 6 5 4 8 8 C 1.52996 * 109.47366 * 299.99389 * 7 6 5 9 9 H 1.09003 * 109.47260 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47581 * 300.00435 * 8 7 6 11 11 C 1.46500 * 119.99533 * 7.24868 * 10 8 7 12 12 C 1.34769 * 120.00045 * 187.24867 * 10 8 7 13 13 O 1.21586 * 120.00545 * 7.26426 * 12 10 8 14 14 N 1.34779 * 119.99462 * 187.26677 * 12 10 8 15 15 C 1.46511 * 119.99682 * 180.02562 * 14 12 10 16 16 C 1.53001 * 109.46824 * 179.97438 * 15 14 12 17 17 C 1.52993 * 109.46604 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.47135 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99672 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00235 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00073 * 359.97438 * 20 18 17 22 22 Si 1.86808 * 119.99988 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47083 * 89.99871 * 22 20 18 24 24 H 1.48496 * 109.46986 * 209.99744 * 22 20 18 25 25 H 1.48496 * 109.46967 * 329.99848 * 22 20 18 26 26 H 1.09000 * 109.47079 * 310.22976 * 1 2 3 27 27 H 1.09004 * 109.47286 * 190.22970 * 1 2 3 28 28 H 1.08995 * 109.47214 * 70.22392 * 1 2 3 29 29 H 1.08998 * 109.47321 * 299.99815 * 4 2 1 30 30 H 1.09000 * 109.47002 * 59.99975 * 4 2 1 31 31 H 1.09000 * 109.47229 * 60.00310 * 5 4 2 32 32 H 1.09003 * 109.46897 * 180.02562 * 5 4 2 33 33 H 1.09002 * 109.46560 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.47085 * 299.99859 * 6 5 4 35 35 H 1.09000 * 109.47187 * 59.99868 * 7 6 5 36 36 H 1.09005 * 109.46707 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.47181 * 89.16985 * 11 10 8 38 38 H 1.08994 * 109.46896 * 209.16898 * 11 10 8 39 39 H 1.09002 * 109.47266 * 329.16903 * 11 10 8 40 40 H 0.96993 * 120.00235 * 0.02562 * 14 12 10 41 41 H 1.08997 * 109.46674 * 300.00001 * 15 14 12 42 42 H 1.09000 * 109.46894 * 59.99556 * 15 14 12 43 43 H 1.08994 * 109.47108 * 299.99575 * 16 15 14 44 44 H 1.08997 * 109.47140 * 60.00115 * 16 15 14 45 45 H 1.08999 * 109.47753 * 299.99968 * 17 16 15 46 46 H 1.09005 * 109.47768 * 60.00057 * 17 16 15 47 47 H 0.97001 * 120.00159 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7217 1.2489 6 6 4.0795 -1.4434 -0.0003 7 6 3.5695 -0.7222 -1.2495 8 6 2.0395 -0.7217 -1.2492 9 1 1.6761 -0.2083 -2.1394 10 7 1.5506 -2.1027 -1.2488 11 6 2.4927 -3.2131 -1.0887 12 6 0.2343 -2.3516 -1.3958 13 8 -0.5303 -1.4440 -1.6603 14 7 -0.2346 -3.6068 -1.2496 15 6 -1.6655 -3.8775 -1.4100 16 6 -1.9296 -5.3691 -1.1945 17 6 -3.4239 -5.6516 -1.3614 18 6 -3.6842 -7.1207 -1.1486 19 1 -2.8657 -7.7861 -0.9171 20 6 -4.9672 -7.6151 -1.2495 21 7 -5.9640 -6.8048 -1.5309 22 14 -5.2897 -9.4363 -0.9864 23 1 -5.5721 -9.6866 0.4498 24 1 -6.4588 -9.8546 -1.8009 25 1 -4.0947 -10.2152 -1.3990 26 1 -0.3633 0.6637 0.7846 27 1 -0.3634 -1.0113 0.1825 28 1 -0.3633 0.3477 -0.9670 29 1 1.6767 -0.2073 2.1393 30 1 1.6767 -1.7488 1.2494 31 1 3.9337 0.3058 1.2487 32 1 3.9334 -1.2359 2.1387 33 1 5.1695 -1.4433 -0.0007 34 1 3.7158 -2.4709 0.0001 35 1 3.9332 0.3053 -1.2497 36 1 3.9328 -1.2361 -2.1394 37 1 2.6156 -3.4354 -0.0287 38 1 2.1070 -4.0938 -1.6022 39 1 3.4565 -2.9364 -1.5160 40 1 0.3753 -4.3307 -1.0382 41 1 -2.2289 -3.2989 -0.6780 42 1 -1.9783 -3.5948 -2.4151 43 1 -1.3661 -5.9472 -1.9269 44 1 -1.6166 -5.6520 -0.1895 45 1 -3.9871 -5.0734 -0.6288 46 1 -3.7373 -5.3685 -2.3663 47 1 -6.8667 -7.1527 -1.6022 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171449146.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:37 Heat of formation + Delta-G solvation = -36.095417 kcal Electronic energy + Delta-G solvation = -23405.213767 eV Core-core repulsion = 20201.814437 eV Total energy + Delta-G solvation = -3203.399330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.06105 -39.45491 -36.95275 -35.81061 -34.99315 -33.59120 -32.89629 -31.01266 -28.57104 -28.32039 -26.54273 -24.99434 -23.20051 -22.37332 -22.27630 -21.36947 -20.09088 -18.84549 -18.45021 -17.65418 -17.09794 -16.48234 -16.29005 -15.65767 -15.54540 -15.43881 -15.01840 -14.86644 -14.32649 -14.29072 -13.95376 -13.79190 -13.67948 -13.23756 -13.12105 -12.80850 -12.77619 -12.71792 -12.52220 -12.43002 -12.40706 -12.26782 -11.72629 -11.61442 -11.50912 -11.22436 -11.13714 -11.08098 -10.88230 -10.60798 -10.55230 -9.89619 -9.32875 -8.19062 -6.30817 1.41851 1.43507 1.54441 1.71879 2.23098 2.42245 3.07043 3.14626 3.76704 3.79293 3.88311 4.17406 4.19445 4.23789 4.24309 4.32745 4.50645 4.54527 4.55501 4.56520 4.59701 4.73602 4.79363 4.83152 4.92303 4.96040 4.97255 5.02392 5.09600 5.16533 5.18948 5.25308 5.34143 5.40228 5.43177 5.46337 5.49183 5.54617 5.71010 5.71559 5.77627 5.84364 6.04239 6.22864 6.86377 7.06420 7.38824 7.67478 8.93173 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032505 B = 0.003053 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.200671 B = 9170.397847 C = 9455.931479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.098 4.098 3 H 0.085 0.915 4 C -0.108 4.108 5 C -0.112 4.112 6 C -0.157 4.157 7 C -0.116 4.116 8 C 0.168 3.832 9 H 0.055 0.945 10 N -0.619 5.619 11 C 0.061 3.939 12 C 0.691 3.309 13 O -0.617 6.617 14 N -0.735 5.735 15 C 0.153 3.847 16 C -0.099 4.099 17 C 0.025 3.975 18 C -0.541 4.541 19 H 0.067 0.933 20 C -0.004 4.004 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.259 1.259 26 H 0.029 0.971 27 H 0.036 0.964 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.407 0.593 41 H 0.042 0.958 42 H 0.044 0.956 43 H 0.067 0.933 44 H 0.066 0.934 45 H -0.009 1.009 46 H -0.009 1.009 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.848 10.676 3.791 28.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.118 4.118 3 H 0.103 0.897 4 C -0.146 4.146 5 C -0.150 4.150 6 C -0.193 4.193 7 C -0.154 4.154 8 C 0.065 3.935 9 H 0.073 0.927 10 N -0.356 5.356 11 C -0.081 4.081 12 C 0.393 3.607 13 O -0.498 6.498 14 N -0.392 5.392 15 C 0.028 3.972 16 C -0.137 4.137 17 C -0.013 4.013 18 C -0.579 4.579 19 H 0.085 0.915 20 C -0.202 4.202 21 N -0.576 5.576 22 Si 0.792 3.208 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.183 1.183 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.127 0.873 40 H 0.244 0.756 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.009 0.991 46 H 0.010 0.990 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 25.142 11.333 3.565 27.808 hybrid contribution -0.980 -0.875 0.115 1.319 sum 24.162 10.458 3.680 26.584 Atomic orbital electron populations 1.22128 0.96006 1.00273 1.00127 1.21566 0.94802 0.99868 0.95527 0.89693 1.21498 0.96893 0.99729 0.96437 1.21484 0.93742 1.01192 0.98562 1.22474 1.01413 1.02215 0.93209 1.21780 0.91137 1.02963 0.99524 1.20975 0.95256 0.80370 0.96927 0.92681 1.47002 1.04050 1.07896 1.76676 1.22468 0.94943 0.88543 1.02133 1.16038 0.83001 0.82829 0.78800 1.90953 1.57958 1.44197 1.56725 1.45242 1.09314 1.08414 1.76217 1.21003 0.79874 0.96508 0.99851 1.21571 0.97710 0.92722 1.01711 1.18930 0.91744 0.95632 0.94995 1.21680 0.93696 0.94729 1.47757 0.91481 1.26041 0.96151 1.03107 0.94867 1.70118 1.00302 1.37251 1.49938 0.85400 0.78018 0.79103 0.78236 1.19817 1.21059 1.18308 0.95226 0.94505 0.93003 0.92818 0.93432 0.91685 0.91471 0.90227 0.88250 0.89305 0.90109 0.90804 0.91453 0.87313 0.75591 0.93942 0.93765 0.91429 0.91569 0.99107 0.99014 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 7.31 71.98 0.53 -3.23 16 2 C -0.10 -2.06 2.54 -10.79 -0.03 -2.09 16 3 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.11 -1.95 5.03 30.59 0.15 -1.80 16 5 C -0.11 -1.35 5.92 30.59 0.18 -1.17 16 6 C -0.16 -1.48 5.17 30.59 0.16 -1.32 16 7 C -0.12 -1.33 4.94 30.59 0.15 -1.18 16 8 C 0.17 3.31 2.60 44.99 0.12 3.43 16 9 H 0.06 1.32 8.03 -2.39 -0.02 1.30 16 10 N -0.62 -13.37 2.22 -841.93 -1.87 -15.24 16 11 C 0.06 0.80 7.80 127.77 1.00 1.79 16 12 C 0.69 21.30 6.56 179.06 1.18 22.47 16 13 O -0.62 -24.01 11.58 -3.99 -0.05 -24.06 16 14 N -0.73 -21.68 5.39 -478.52 -2.58 -24.26 16 15 C 0.15 5.67 5.67 86.38 0.49 6.16 16 16 C -0.10 -3.92 5.27 30.59 0.16 -3.76 16 17 C 0.02 1.31 4.97 29.85 0.15 1.46 16 18 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 19 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 20 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 21 N -0.94 -57.77 13.29 21.44 0.28 -57.48 16 22 Si 0.97 44.00 29.54 68.60 2.03 46.03 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 25 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 26 H 0.03 0.80 8.14 -2.39 -0.02 0.79 16 27 H 0.04 1.26 5.41 -2.39 -0.01 1.25 16 28 H 0.05 1.76 6.52 -2.39 -0.02 1.75 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 1.00 7.21 -2.39 -0.02 0.98 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.10 0.90 3.12 -2.87 -0.01 0.90 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.08 0.77 7.21 -2.38 -0.02 0.75 16 37 H 0.07 0.82 6.39 -2.39 -0.02 0.81 16 38 H 0.07 0.86 6.64 -2.39 -0.02 0.84 16 39 H 0.11 0.93 4.97 -2.39 -0.01 0.92 16 40 H 0.41 9.40 6.39 -92.71 -0.59 8.80 16 41 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 45 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 46 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 47 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -71.41 345.49 3.09 -68.32 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.35 Total: 15.94 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 4.93 Total: -9.24 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -4.17 Total: -96.99 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -71.41 3.09 -68.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171449146.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.224 kcal (2) G-P(sol) polarization free energy of solvation -71.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds