Wall clock time and date at job start Tue Mar 31 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.53001 * 109.47149 * 239.99086 * 2 1 3 5 5 C 1.52995 * 109.47305 * 300.00654 * 4 2 1 6 6 H 1.08998 * 109.47710 * 59.99680 * 5 4 2 7 7 C 1.53003 * 109.47168 * 179.97438 * 5 4 2 8 8 C 1.53003 * 109.46961 * 299.99592 * 5 4 2 9 9 C 1.53004 * 109.47188 * 60.00423 * 8 5 4 10 10 C 1.52998 * 109.46712 * 300.00023 * 9 8 5 11 11 H 1.08998 * 109.47471 * 299.99897 * 10 9 8 12 12 N 1.46502 * 109.47082 * 179.97438 * 10 9 8 13 13 C 1.34782 * 119.99706 * 84.99923 * 12 10 9 14 14 O 1.21586 * 119.99799 * 0.02562 * 13 12 10 15 15 N 1.34771 * 119.99751 * 180.02562 * 13 12 10 16 16 C 1.46505 * 119.99643 * 180.02562 * 15 13 12 17 17 C 1.53007 * 109.46903 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.46873 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46700 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00803 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99889 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00186 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00030 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 89.99863 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00044 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00037 * 23 21 19 27 27 H 1.08996 * 109.47146 * 300.00763 * 1 2 3 28 28 H 1.09005 * 109.47069 * 60.00383 * 1 2 3 29 29 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46701 * 60.00306 * 4 2 1 31 31 H 1.08998 * 109.46998 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.46571 * 59.99897 * 7 5 4 33 33 H 1.08993 * 109.47031 * 179.97438 * 7 5 4 34 34 H 1.08995 * 109.47142 * 299.99867 * 7 5 4 35 35 H 1.09003 * 109.46694 * 180.02562 * 8 5 4 36 36 H 1.08990 * 109.47208 * 300.00285 * 8 5 4 37 37 H 1.08995 * 109.47188 * 179.97438 * 9 8 5 38 38 H 1.08996 * 109.46959 * 59.99401 * 9 8 5 39 39 H 0.96994 * 120.00458 * 264.99884 * 12 10 9 40 40 H 0.96994 * 120.00413 * 359.97438 * 15 13 12 41 41 H 1.08994 * 109.47383 * 60.00051 * 16 15 13 42 42 H 1.09003 * 109.47228 * 299.99438 * 16 15 13 43 43 H 1.09004 * 109.47180 * 59.99849 * 17 16 15 44 44 H 1.08997 * 109.46702 * 300.00020 * 17 16 15 45 45 H 1.09004 * 109.47139 * 60.00071 * 18 17 16 46 46 H 1.08997 * 109.47675 * 299.99671 * 18 17 16 47 47 H 0.96998 * 120.00124 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7215 -1.2491 5 6 1.5299 -2.1639 -1.2490 6 1 0.4400 -2.1639 -1.2490 7 6 2.0394 -2.8851 -2.4985 8 6 2.0399 -2.8850 0.0003 9 6 1.5299 -2.1637 1.2495 10 6 2.0399 -0.7212 1.2493 11 1 3.1299 -0.7212 1.2494 12 7 1.5511 -0.0303 2.4451 13 6 2.2275 -0.1328 3.6064 14 8 3.2435 -0.7984 3.6614 15 7 1.7775 0.5024 4.7066 16 6 2.5131 0.3914 5.9688 17 6 1.7945 1.2004 7.0506 18 6 2.5623 1.0839 8.3689 19 6 1.8549 1.8812 9.4342 20 1 0.9482 2.4171 9.1951 21 6 2.3653 1.9267 10.7142 22 7 1.7478 2.6221 11.6441 23 14 3.9340 1.0006 11.1277 24 1 5.1057 1.8830 10.8958 25 1 4.0413 -0.2021 10.2632 26 1 3.9021 0.5844 12.5529 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.6767 -0.2077 -2.1392 31 1 3.1300 -0.7210 -1.2493 32 1 3.1295 -2.8851 -2.4988 33 1 1.6764 -3.9128 -2.4982 34 1 1.6758 -2.3712 -3.3883 35 1 1.6768 -3.9128 0.0001 36 1 3.1298 -2.8851 0.0003 37 1 1.8928 -2.6777 2.1395 38 1 0.4399 -2.1636 1.2494 39 1 0.7408 0.5009 2.4012 40 1 0.9672 1.0336 4.6627 41 1 3.5232 0.7784 5.8359 42 1 2.5616 -0.6550 6.2702 43 1 0.7844 0.8129 7.1834 44 1 1.7456 2.2467 6.7494 45 1 3.5726 1.4712 8.2364 46 1 2.6109 0.0375 8.6699 47 1 2.1070 2.6544 12.5446 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172150419.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:38 Heat of formation + Delta-G solvation = -73.167194 kcal Electronic energy + Delta-G solvation = -22302.441190 eV Core-core repulsion = 19097.434308 eV Total energy + Delta-G solvation = -3205.006883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.52228 -39.00356 -35.62793 -34.70569 -33.29224 -32.45807 -31.60221 -30.78015 -27.33277 -27.18805 -25.78724 -22.99736 -22.60997 -21.42636 -20.74290 -20.18936 -19.17178 -18.03919 -16.89498 -16.41335 -15.59607 -15.35878 -15.09980 -14.66295 -14.55679 -14.28011 -14.06026 -13.95057 -13.58189 -13.19639 -12.97265 -12.69613 -12.54681 -12.37413 -12.04141 -11.95840 -11.89306 -11.67242 -11.37522 -11.15506 -11.04317 -10.87343 -10.84970 -10.37314 -10.36182 -10.21606 -9.97370 -9.79458 -9.64988 -9.21273 -9.14671 -8.62771 -8.54125 -6.05173 -4.03717 2.81694 3.32681 3.36811 3.40110 3.44964 4.27944 4.31820 4.34769 4.45802 4.52878 4.66851 4.84871 4.90863 5.02256 5.17271 5.20315 5.26414 5.29014 5.32535 5.40280 5.50859 5.54655 5.59588 5.60051 5.67132 5.72331 5.74810 5.84111 5.88298 5.93618 5.98794 6.06852 6.11318 6.24057 6.42232 6.49637 6.54018 6.73271 6.85739 7.06372 7.25549 7.38810 7.77237 8.15581 8.51488 8.76050 8.98699 9.57182 11.08020 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.044243 B = 0.002493 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.716181 B =11228.682054 C =11593.976640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 H 0.076 0.924 4 C -0.105 4.105 5 C -0.096 4.096 6 H 0.073 0.927 7 C -0.148 4.148 8 C -0.111 4.111 9 C -0.132 4.132 10 C 0.171 3.829 11 H 0.086 0.914 12 N -0.747 5.747 13 C 0.700 3.300 14 O -0.594 6.594 15 N -0.743 5.743 16 C 0.133 3.867 17 C -0.113 4.113 18 C -0.011 4.011 19 C -0.521 4.521 20 H 0.072 0.928 21 C 0.066 3.934 22 N -0.903 5.903 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.264 1.264 26 H -0.288 1.288 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.393 0.607 40 H 0.394 0.606 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.014 0.986 46 H 0.019 0.981 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.946 -8.013 -29.351 30.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.118 4.118 3 H 0.094 0.906 4 C -0.143 4.143 5 C -0.114 4.114 6 H 0.091 0.909 7 C -0.205 4.205 8 C -0.149 4.149 9 C -0.171 4.171 10 C 0.065 3.935 11 H 0.104 0.896 12 N -0.403 5.403 13 C 0.400 3.600 14 O -0.473 6.473 15 N -0.397 5.397 16 C 0.010 3.990 17 C -0.151 4.151 18 C -0.049 4.049 19 C -0.559 4.559 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.542 5.542 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.189 1.189 26 H -0.214 1.214 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.227 0.773 40 H 0.227 0.773 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.033 0.967 46 H 0.037 0.963 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.971 -8.577 -29.071 30.374 hybrid contribution -0.009 0.149 0.418 0.444 sum -1.980 -8.428 -28.653 29.932 Atomic orbital electron populations 1.21963 0.94997 1.02431 1.01567 1.21377 0.96380 0.99723 0.94333 0.90600 1.21576 1.00903 0.95086 0.96778 1.21217 1.00620 0.94733 0.94846 0.90866 1.21831 1.01281 1.00172 0.97239 1.21550 1.01092 0.98776 0.93488 1.21982 1.00958 0.95680 0.98480 1.20751 0.99530 0.90781 0.82415 0.89577 1.45291 1.30158 1.55734 1.09125 1.16039 0.83236 0.80352 0.80375 1.90905 1.25996 1.45696 1.84656 1.45341 1.30448 1.54180 1.09751 1.21496 0.95440 1.00906 0.81170 1.21703 0.99620 0.98846 0.94896 1.19502 0.95752 0.97345 0.92315 1.21100 1.11257 1.30249 0.93315 0.91032 1.25037 0.97180 0.95005 0.96336 1.69915 1.40054 1.41394 1.02876 0.86770 0.83913 0.81055 0.77532 1.20249 1.18856 1.21394 0.92853 0.92437 0.91666 0.91569 0.91617 0.92674 0.92753 0.92813 0.91863 0.91735 0.91267 0.91680 0.77262 0.77259 0.92048 0.92046 0.92170 0.92193 0.96722 0.96284 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.33 37.16 0.31 -0.60 16 2 C -0.10 -0.70 2.88 -90.62 -0.26 -0.96 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.67 4.73 -26.73 -0.13 -0.79 16 5 C -0.10 -0.60 2.44 -90.62 -0.22 -0.83 16 6 H 0.07 0.45 6.43 -51.93 -0.33 0.12 16 7 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 8 C -0.11 -0.86 5.21 -26.73 -0.14 -1.00 16 9 C -0.13 -1.25 5.22 -26.73 -0.14 -1.39 16 10 C 0.17 1.67 2.15 -67.93 -0.15 1.52 16 11 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 12 N -0.75 -7.99 5.00 -58.67 -0.29 -8.29 16 13 C 0.70 10.49 8.53 -86.92 -0.74 9.75 16 14 O -0.59 -11.39 16.01 5.29 0.08 -11.31 16 15 N -0.74 -10.53 5.56 -65.22 -0.36 -10.90 16 16 C 0.13 2.28 5.67 -4.04 -0.02 2.26 16 17 C -0.11 -2.13 5.27 -26.73 -0.14 -2.27 16 18 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 19 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 20 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 21 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 22 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 23 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H 0.05 0.30 6.50 -51.93 -0.34 -0.03 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.40 4.81 -51.93 -0.25 0.15 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 39 H 0.39 3.20 6.88 -40.82 -0.28 2.92 16 40 H 0.39 4.47 8.49 -40.82 -0.35 4.12 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 46 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -32.94 359.71 -9.42 -42.36 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.55 Total: 1.03 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -1.83 Total: -8.46 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.12 Total: -46.29 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.08 Total: -11.31 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.94 -9.42 -42.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172150419.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.803 kcal (2) G-P(sol) polarization free energy of solvation -32.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds