Wall clock time and date at job start Tue Mar 31 2020 06:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47506 * 2 1 4 4 C 1.52999 * 109.47068 * 239.99574 * 2 1 3 5 5 C 1.53002 * 109.47068 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46790 * 60.00309 * 5 4 2 7 7 H 1.09006 * 109.47321 * 60.00323 * 6 5 4 8 8 N 1.46500 * 109.47022 * 180.02562 * 6 5 4 9 9 C 1.34782 * 120.00017 * 274.99663 * 8 6 5 10 10 O 1.21589 * 119.99610 * 0.02562 * 9 8 6 11 11 N 1.34775 * 120.00071 * 179.97438 * 9 8 6 12 12 C 1.46506 * 119.99877 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46748 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47000 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47211 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 13 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 14 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 14 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15 22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15 23 23 C 1.52996 * 109.47398 * 300.00112 * 6 5 4 24 24 H 1.09006 * 109.46706 * 299.99958 * 23 6 5 25 25 C 1.53000 * 109.47398 * 179.97438 * 23 6 5 26 26 C 1.52999 * 109.47406 * 59.99647 * 23 6 5 27 27 H 1.08992 * 109.47258 * 300.00156 * 1 2 3 28 28 H 1.08998 * 109.46985 * 60.00112 * 1 2 3 29 29 H 1.09001 * 109.47544 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47533 * 300.00735 * 4 2 1 31 31 H 1.08998 * 109.46961 * 60.00300 * 4 2 1 32 32 H 1.08993 * 109.47506 * 300.00426 * 5 4 2 33 33 H 1.08999 * 109.46937 * 180.02562 * 5 4 2 34 34 H 0.96992 * 120.00205 * 95.00487 * 8 6 5 35 35 H 0.97002 * 120.00050 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.46761 * 60.00339 * 12 11 9 37 37 H 1.08998 * 109.46975 * 300.00637 * 12 11 9 38 38 H 1.09000 * 109.47849 * 59.99921 * 13 12 11 39 39 H 1.09007 * 109.47288 * 299.99514 * 13 12 11 40 40 H 1.09000 * 109.47211 * 59.99130 * 14 13 12 41 41 H 1.09007 * 109.46376 * 299.99672 * 14 13 12 42 42 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.46823 * 59.99911 * 25 23 6 44 44 H 1.08999 * 109.47171 * 179.97438 * 25 23 6 45 45 H 1.08992 * 109.47163 * 300.00224 * 25 23 6 46 46 H 1.09006 * 109.46421 * 60.00336 * 26 23 6 47 47 H 1.08996 * 109.47345 * 179.97438 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0794 -1.4435 0.0004 7 1 3.7157 -2.4711 0.0002 8 7 5.5444 -1.4435 0.0011 9 6 6.2186 -2.3996 -0.6683 10 8 5.6109 -3.2617 -1.2731 11 7 7.5664 -2.3993 -0.6681 12 6 8.2992 -3.4382 -1.3963 13 6 9.8033 -3.2093 -1.2350 14 6 10.5687 -4.2938 -1.9959 15 6 12.0502 -4.0687 -1.8366 16 1 12.4099 -3.2352 -1.2516 17 6 12.9464 -4.9232 -2.4429 18 7 12.5083 -5.9380 -3.1557 19 14 14.7828 -4.6397 -2.2519 20 1 15.0133 -3.4396 -1.4083 21 1 15.4023 -5.8252 -1.6068 22 1 15.3929 -4.4287 -3.5893 23 6 3.5694 -0.7223 1.2496 24 1 3.9332 0.3053 1.2498 25 6 4.0783 -1.4443 2.4989 26 6 2.0394 -0.7216 1.2493 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.9338 0.3055 -1.2486 33 1 3.9333 -1.2354 -2.1390 34 1 6.0292 -0.7557 0.4833 35 1 8.0512 -1.7113 -0.1859 36 1 8.0360 -3.3954 -2.4531 37 1 8.0359 -4.4170 -0.9956 38 1 10.0663 -3.2522 -0.1781 39 1 10.0669 -2.2303 -1.6355 40 1 10.3056 -4.2505 -3.0529 41 1 10.3052 -5.2729 -1.5958 42 1 13.1388 -6.5390 -3.5825 43 1 5.1683 -1.4451 2.4994 44 1 3.7153 -0.9302 3.3889 45 1 3.7142 -2.4716 2.4984 46 1 1.6757 -1.7492 1.2491 47 1 1.6761 -0.2082 2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172150422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:41 Heat of formation + Delta-G solvation = -81.685503 kcal Electronic energy + Delta-G solvation = -22183.323078 eV Core-core repulsion = 18977.946814 eV Total energy + Delta-G solvation = -3205.376264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.32626 -38.79280 -35.52014 -34.70128 -33.29673 -32.80403 -31.52701 -30.56345 -26.96585 -26.85034 -25.59457 -23.11658 -22.31965 -20.87337 -20.71099 -20.41265 -20.04104 -17.92754 -16.71224 -16.15521 -15.51330 -15.16288 -14.93162 -14.57128 -14.40079 -14.36814 -14.08907 -13.87521 -13.58778 -13.06906 -12.71294 -12.60978 -12.49361 -12.27129 -12.11378 -11.77731 -11.76374 -11.46815 -11.27950 -11.05696 -10.91057 -10.86302 -10.69945 -10.60296 -10.55132 -10.34106 -9.99727 -9.83861 -9.41629 -9.09449 -9.07878 -8.54121 -8.36260 -6.00640 -4.03597 2.87849 3.30553 3.38005 3.41565 3.44063 4.30990 4.31795 4.39314 4.46051 4.58981 4.69586 4.87269 5.01156 5.12795 5.18961 5.21296 5.32222 5.35108 5.38913 5.47341 5.53420 5.56143 5.62659 5.72992 5.74366 5.83145 5.85016 5.88810 5.92953 5.96915 6.03079 6.12115 6.21499 6.23458 6.57878 6.59207 6.65490 6.85805 7.05457 7.14908 7.65810 7.78693 7.98611 8.22665 8.39607 8.83355 9.03409 9.60487 11.10692 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045869 B = 0.002367 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.289358 B =11825.856388 C =12108.239861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.131 4.131 6 C 0.171 3.829 7 H 0.087 0.913 8 N -0.747 5.747 9 C 0.700 3.300 10 O -0.593 6.593 11 N -0.743 5.743 12 C 0.136 3.864 13 C -0.120 4.120 14 C 0.023 3.977 15 C -0.521 4.521 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.098 4.098 24 H 0.073 0.927 25 C -0.147 4.147 26 C -0.105 4.105 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.392 0.608 35 H 0.393 0.607 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.260 0.740 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.056 0.944 46 H 0.066 0.934 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.487 14.529 10.014 28.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.149 4.149 5 C -0.170 4.170 6 C 0.065 3.935 7 H 0.105 0.895 8 N -0.402 5.402 9 C 0.400 3.600 10 O -0.471 6.471 11 N -0.397 5.397 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.117 4.117 24 H 0.092 0.908 25 C -0.204 4.204 26 C -0.143 4.143 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.226 0.774 35 H 0.226 0.774 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.969 13.537 9.331 28.247 hybrid contribution 1.585 0.740 0.449 1.806 sum -21.384 14.276 9.780 27.509 Atomic orbital electron populations 1.21826 0.95254 1.01879 1.01529 1.21181 0.95424 0.99653 0.95025 0.91235 1.21557 0.95043 1.00945 0.97391 1.21958 0.95453 1.00680 0.98912 1.20789 0.78392 1.00556 0.93726 0.89529 1.45209 1.06760 1.31424 1.56770 1.16037 0.82053 0.81970 0.79954 1.90910 1.67955 1.39578 1.48700 1.45398 1.04306 1.33268 1.56759 1.21486 0.92011 0.89509 0.95759 1.21885 0.91133 1.01606 1.01180 1.19037 0.94173 0.92900 0.95328 1.21244 0.91309 1.11935 1.31434 0.92611 1.25038 0.99032 0.95221 0.95273 1.69976 1.34367 1.15649 1.33269 0.86527 0.85500 0.78075 0.77817 1.19783 1.21013 1.21020 1.21403 0.96052 0.99786 0.94460 0.90835 1.21817 1.01361 1.00597 0.96642 1.21612 0.93859 1.01172 0.97657 0.92811 0.92735 0.92625 0.91678 0.91837 0.92063 0.91122 0.77445 0.77427 0.92044 0.92044 0.92806 0.92819 0.96243 0.96250 0.92991 0.92399 0.92657 0.92492 0.91573 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.19 37.16 0.34 -0.52 16 2 C -0.09 -0.63 2.72 -90.62 -0.25 -0.87 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.11 -0.90 5.20 -26.73 -0.14 -1.04 16 5 C -0.13 -1.29 5.50 -26.73 -0.15 -1.44 16 6 C 0.17 1.73 1.90 -67.93 -0.13 1.60 16 7 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 8 N -0.75 -8.19 4.39 -58.67 -0.26 -8.45 16 9 C 0.70 10.83 8.53 -86.91 -0.74 10.09 16 10 O -0.59 -11.77 16.01 5.29 0.08 -11.69 16 11 N -0.74 -10.99 5.56 -65.22 -0.36 -11.35 16 12 C 0.14 2.47 5.67 -4.04 -0.02 2.44 16 13 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 14 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 15 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 19 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.10 -0.72 2.30 -90.62 -0.21 -0.93 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 C -0.15 -1.10 9.03 37.16 0.34 -0.76 16 26 C -0.11 -0.70 4.48 -26.73 -0.12 -0.82 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.39 3.23 8.40 -40.82 -0.34 2.89 16 35 H 0.39 4.63 8.49 -40.82 -0.35 4.28 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.06 0.45 7.45 -51.93 -0.39 0.07 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -32.55 372.09 -10.02 -42.57 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -9.04 Total: 0.76 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.77 Total: -7.77 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.12 Total: -46.06 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.55 -10.02 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172150422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.112 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds