Wall clock time and date at job start Tue Mar 31 2020 06:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08993 * 109.47506 * 2 1 4 4 C 1.52999 * 109.47068 * 239.99574 * 2 1 3 5 5 C 1.53002 * 109.47068 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46790 * 60.00309 * 5 4 2 7 7 H 1.09006 * 109.47321 * 60.00323 * 6 5 4 8 8 N 1.46500 * 109.47022 * 180.02562 * 6 5 4 9 9 C 1.34782 * 120.00017 * 274.99663 * 8 6 5 10 10 O 1.21589 * 119.99610 * 0.02562 * 9 8 6 11 11 N 1.34775 * 120.00071 * 179.97438 * 9 8 6 12 12 C 1.46506 * 119.99877 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46748 * 180.02562 * 12 11 9 14 14 C 1.53004 * 109.47000 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47211 * 180.02562 * 14 13 12 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99694 * 180.27574 * 15 14 13 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 14 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 14 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15 22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15 23 23 C 1.52996 * 109.47398 * 300.00112 * 6 5 4 24 24 H 1.09006 * 109.46706 * 299.99958 * 23 6 5 25 25 C 1.53000 * 109.47398 * 179.97438 * 23 6 5 26 26 C 1.52999 * 109.47406 * 59.99647 * 23 6 5 27 27 H 1.08992 * 109.47258 * 300.00156 * 1 2 3 28 28 H 1.08998 * 109.46985 * 60.00112 * 1 2 3 29 29 H 1.09001 * 109.47544 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47533 * 300.00735 * 4 2 1 31 31 H 1.08998 * 109.46961 * 60.00300 * 4 2 1 32 32 H 1.08993 * 109.47506 * 300.00426 * 5 4 2 33 33 H 1.08999 * 109.46937 * 180.02562 * 5 4 2 34 34 H 0.96992 * 120.00205 * 95.00487 * 8 6 5 35 35 H 0.97002 * 120.00050 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.46761 * 60.00339 * 12 11 9 37 37 H 1.08998 * 109.46975 * 300.00637 * 12 11 9 38 38 H 1.09000 * 109.47849 * 59.99921 * 13 12 11 39 39 H 1.09007 * 109.47288 * 299.99514 * 13 12 11 40 40 H 1.09000 * 109.47211 * 59.99130 * 14 13 12 41 41 H 1.09007 * 109.46376 * 299.99672 * 14 13 12 42 42 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.46823 * 59.99911 * 25 23 6 44 44 H 1.08999 * 109.47171 * 179.97438 * 25 23 6 45 45 H 1.08992 * 109.47163 * 300.00224 * 25 23 6 46 46 H 1.09006 * 109.46421 * 60.00336 * 26 23 6 47 47 H 1.08996 * 109.47345 * 179.97438 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 6 4.0794 -1.4435 0.0004 7 1 3.7157 -2.4711 0.0002 8 7 5.5444 -1.4435 0.0011 9 6 6.2186 -2.3996 -0.6683 10 8 5.6109 -3.2617 -1.2731 11 7 7.5664 -2.3993 -0.6681 12 6 8.2992 -3.4382 -1.3963 13 6 9.8033 -3.2093 -1.2350 14 6 10.5687 -4.2938 -1.9959 15 6 12.0502 -4.0687 -1.8366 16 1 12.4099 -3.2352 -1.2516 17 6 12.9464 -4.9232 -2.4429 18 7 12.5083 -5.9380 -3.1557 19 14 14.7828 -4.6397 -2.2519 20 1 15.0133 -3.4396 -1.4083 21 1 15.4023 -5.8252 -1.6068 22 1 15.3929 -4.4287 -3.5893 23 6 3.5694 -0.7223 1.2496 24 1 3.9332 0.3053 1.2498 25 6 4.0783 -1.4443 2.4989 26 6 2.0394 -0.7216 1.2493 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.9338 0.3055 -1.2486 33 1 3.9333 -1.2354 -2.1390 34 1 6.0292 -0.7557 0.4833 35 1 8.0512 -1.7113 -0.1859 36 1 8.0360 -3.3954 -2.4531 37 1 8.0359 -4.4170 -0.9956 38 1 10.0663 -3.2522 -0.1781 39 1 10.0669 -2.2303 -1.6355 40 1 10.3056 -4.2505 -3.0529 41 1 10.3052 -5.2729 -1.5958 42 1 13.1388 -6.5390 -3.5825 43 1 5.1683 -1.4451 2.4994 44 1 3.7153 -0.9302 3.3889 45 1 3.7142 -2.4716 2.4984 46 1 1.6757 -1.7492 1.2491 47 1 1.6761 -0.2082 2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172150422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:40 Heat of formation + Delta-G solvation = -101.883904 kcal Electronic energy + Delta-G solvation = -22184.198947 eV Core-core repulsion = 18977.946814 eV Total energy + Delta-G solvation = -3206.252133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.37006 -39.73004 -37.00537 -35.70449 -35.17504 -33.63849 -32.98764 -31.68217 -28.58349 -27.47761 -26.59382 -24.82940 -23.17637 -22.29672 -21.76522 -21.47123 -20.83165 -19.11092 -18.53572 -17.52259 -16.79684 -16.52839 -16.04054 -15.83302 -15.51703 -15.43691 -15.08885 -14.90383 -14.51922 -14.27600 -13.80837 -13.66993 -13.60730 -13.33322 -13.22040 -13.07536 -12.77879 -12.68418 -12.54327 -12.33220 -12.15913 -11.99013 -11.71458 -11.67446 -11.64299 -11.47425 -11.29680 -11.20444 -11.10751 -10.96919 -10.56131 -10.29914 -9.71850 -8.19366 -6.30902 1.41770 1.42056 1.55317 1.73295 2.17510 2.42053 3.14311 3.32875 3.63533 3.74009 3.91204 4.09350 4.17511 4.20822 4.23896 4.39481 4.45230 4.47927 4.54561 4.56481 4.76659 4.82411 4.83810 4.94127 4.96115 4.98116 5.02922 5.06718 5.12387 5.16918 5.19277 5.22620 5.26542 5.38625 5.42147 5.46226 5.48037 5.55534 5.60116 5.66333 5.71221 5.84554 6.05765 6.22877 6.86681 7.15462 7.38652 7.62294 8.93040 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045869 B = 0.002367 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.289358 B =11825.856388 C =12108.239861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.080 0.920 4 C -0.109 4.109 5 C -0.127 4.127 6 C 0.169 3.831 7 H 0.056 0.944 8 N -0.725 5.725 9 C 0.697 3.303 10 O -0.641 6.641 11 N -0.731 5.731 12 C 0.151 3.849 13 C -0.099 4.099 14 C 0.023 3.977 15 C -0.539 4.539 16 H 0.067 0.933 17 C -0.006 4.006 18 N -0.936 5.936 19 Si 0.969 3.031 20 H -0.258 1.258 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.088 4.088 24 H 0.093 0.907 25 C -0.146 4.146 26 C -0.103 4.103 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.410 0.590 35 H 0.411 0.589 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.068 0.932 39 H 0.068 0.932 40 H -0.008 1.008 41 H -0.008 1.008 42 H 0.263 0.737 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.041 0.959 46 H 0.055 0.945 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.302 17.340 11.939 30.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.098 0.902 4 C -0.147 4.147 5 C -0.166 4.166 6 C 0.064 3.936 7 H 0.074 0.926 8 N -0.381 5.381 9 C 0.397 3.603 10 O -0.523 6.523 11 N -0.387 5.387 12 C 0.026 3.974 13 C -0.137 4.137 14 C -0.015 4.015 15 C -0.577 4.577 16 H 0.086 0.914 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.793 3.207 20 H -0.181 1.181 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.107 4.107 24 H 0.111 0.889 25 C -0.204 4.204 26 C -0.141 4.141 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.247 0.753 35 H 0.248 0.752 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.010 0.990 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.791 16.417 11.306 30.278 hybrid contribution 1.462 -0.154 -0.166 1.480 sum -21.328 16.263 11.140 29.043 Atomic orbital electron populations 1.21811 0.94532 1.01791 1.02225 1.21151 0.95989 0.99776 0.93850 0.90163 1.21546 0.93701 1.00640 0.98847 1.21897 0.96736 1.00796 0.97131 1.20890 0.77541 0.99474 0.95675 0.92613 1.45039 1.07184 1.30460 1.55398 1.16208 0.82012 0.82206 0.79910 1.90885 1.68892 1.41726 1.50807 1.45031 1.04179 1.32947 1.56532 1.21044 0.91440 0.89820 0.95114 1.21581 0.91106 0.99970 1.01072 1.18955 0.94534 0.93660 0.94357 1.21706 0.92449 1.12183 1.31331 0.91449 1.26054 1.04572 0.94866 0.94845 1.70123 1.36303 1.16791 1.34384 0.85340 0.78813 0.78486 0.78030 1.18124 1.20594 1.20608 1.21362 0.96576 1.00166 0.92558 0.88881 1.21818 1.01149 1.00001 0.97393 1.21622 0.93114 1.00938 0.98459 0.91680 0.92492 0.93151 0.92992 0.91293 0.90563 0.94573 0.75303 0.75220 0.93763 0.93730 0.91308 0.91348 0.99004 0.98997 0.92826 0.92703 0.90827 0.93996 0.92570 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.19 71.98 0.66 -0.77 16 2 C -0.09 -1.00 2.72 -10.79 -0.03 -1.03 16 3 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.11 -1.72 5.20 30.59 0.16 -1.56 16 5 C -0.13 -2.46 5.50 30.59 0.17 -2.29 16 6 C 0.17 3.35 1.90 44.99 0.09 3.44 16 7 H 0.06 1.48 7.58 -2.38 -0.02 1.46 16 8 N -0.73 -15.20 4.39 -457.80 -2.01 -17.21 16 9 C 0.70 21.61 8.53 179.05 1.53 23.13 16 10 O -0.64 -26.50 16.01 -3.99 -0.06 -26.56 16 11 N -0.73 -21.07 5.56 -478.53 -2.66 -23.73 16 12 C 0.15 5.56 5.67 86.38 0.49 6.05 16 13 C -0.10 -3.89 5.27 30.59 0.16 -3.73 16 14 C 0.02 1.20 4.97 29.85 0.15 1.35 16 15 C -0.54 -30.28 9.11 25.60 0.23 -30.05 16 16 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 17 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 18 N -0.94 -57.70 13.29 21.45 0.28 -57.42 16 19 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 20 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 C -0.09 -1.10 2.30 -10.80 -0.02 -1.13 16 24 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 25 C -0.15 -1.90 9.03 71.98 0.65 -1.25 16 26 C -0.10 -1.15 4.48 30.59 0.14 -1.02 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.41 5.75 8.40 -92.71 -0.78 4.97 16 35 H 0.41 8.77 8.49 -92.71 -0.79 7.98 16 36 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 40 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 41 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 42 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 43 H 0.05 0.74 7.45 -2.39 -0.02 0.72 16 44 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -72.60 372.09 1.76 -70.83 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -0.64 Total: 16.71 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 4.83 Total: -8.72 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -4.38 Total: -98.36 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.06 Total: -26.56 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -72.60 1.76 -70.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172150422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.051 kcal (2) G-P(sol) polarization free energy of solvation -72.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds