Wall clock time and date at job start Tue Mar 31 2020 06:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47160 * 2 1 4 4 C 1.53004 * 109.47173 * 239.99363 * 2 1 3 5 5 C 1.53001 * 109.46939 * 180.02562 * 4 2 1 6 6 H 1.08996 * 109.47173 * 180.02562 * 5 4 2 7 7 C 1.53008 * 109.47050 * 299.99844 * 5 4 2 8 8 C 1.52994 * 109.47472 * 60.00150 * 5 4 2 9 9 C 1.53004 * 109.46915 * 299.99864 * 8 5 4 10 10 C 1.53002 * 109.46930 * 119.99532 * 2 1 3 11 11 H 1.09004 * 109.47229 * 59.99987 * 10 2 1 12 12 N 1.46492 * 109.47241 * 299.99985 * 10 2 1 13 13 C 1.34777 * 120.00377 * 154.99743 * 12 10 2 14 14 O 1.21591 * 119.99867 * 0.02562 * 13 12 10 15 15 N 1.34774 * 120.00504 * 179.97438 * 13 12 10 16 16 C 1.46497 * 120.00283 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47298 * 180.02562 * 16 15 13 18 18 C 1.53001 * 109.47355 * 180.02562 * 17 16 15 19 19 C 1.50694 * 109.47168 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00563 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99902 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99913 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99766 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46985 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47276 * 299.99832 * 23 21 19 26 26 H 1.48498 * 109.47150 * 60.00043 * 23 21 19 27 27 H 1.08990 * 109.46915 * 300.00493 * 1 2 3 28 28 H 1.08998 * 109.46567 * 60.00754 * 1 2 3 29 29 H 1.09004 * 109.47175 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.46791 * 60.00398 * 4 2 1 31 31 H 1.08996 * 109.46880 * 300.00334 * 4 2 1 32 32 H 1.09000 * 109.46901 * 179.97438 * 7 5 4 33 33 H 1.08996 * 109.47148 * 300.00740 * 7 5 4 34 34 H 1.09004 * 109.46771 * 60.00154 * 7 5 4 35 35 H 1.08997 * 109.47458 * 180.02562 * 8 5 4 36 36 H 1.08996 * 109.47166 * 59.99468 * 8 5 4 37 37 H 1.09000 * 109.47598 * 299.99745 * 9 8 5 38 38 H 1.09001 * 109.46986 * 179.97438 * 9 8 5 39 39 H 0.97006 * 120.00380 * 334.99996 * 12 10 2 40 40 H 0.96997 * 120.00043 * 0.02562 * 15 13 12 41 41 H 1.09002 * 109.46745 * 60.00812 * 16 15 13 42 42 H 1.08992 * 109.47732 * 300.00771 * 16 15 13 43 43 H 1.09002 * 109.46807 * 60.00547 * 17 16 15 44 44 H 1.08998 * 109.47285 * 300.00150 * 17 16 15 45 45 H 1.09007 * 109.46922 * 59.99890 * 18 17 16 46 46 H 1.09003 * 109.46836 * 300.00646 * 18 17 16 47 47 H 0.97001 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 3.5701 -0.7219 -1.2488 6 1 3.9334 -1.2354 -2.1389 7 6 4.0806 0.7205 -1.2487 8 6 4.0796 -1.4434 0.0004 9 6 3.5696 -0.7220 1.2496 10 6 2.0400 -0.7212 1.2493 11 1 1.6766 -1.7489 1.2494 12 7 1.5517 -0.0305 2.4454 13 6 1.4228 -0.7027 3.6064 14 8 1.7124 -1.8824 3.6613 15 7 0.9741 -0.0672 4.7069 16 6 0.8335 -0.7981 5.9688 17 6 0.3093 0.1483 7.0507 18 6 0.1631 -0.6148 8.3687 19 6 -0.3538 0.3171 9.4341 20 1 -0.5582 1.3503 9.1950 21 6 -0.5660 -0.1492 10.7142 22 7 -0.3177 -1.4075 11.0052 23 14 -1.2061 1.0062 12.0350 24 1 -1.3481 0.2655 13.3143 25 1 -0.2511 2.1288 12.2159 26 1 -2.5287 1.5427 11.6248 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 1.6768 -0.2076 -2.1391 31 1 1.6767 -1.7490 -1.2491 32 1 5.1706 0.7201 -1.2479 33 1 3.7175 1.2345 -2.1386 34 1 3.7172 1.2344 -0.3587 35 1 5.1695 -1.4434 0.0009 36 1 3.7159 -2.4709 0.0003 37 1 3.9332 0.3056 1.2498 38 1 3.9322 -1.2362 2.1396 39 1 1.3210 0.9107 2.4018 40 1 0.7434 0.8739 4.6634 41 1 1.8039 -1.1927 6.2700 42 1 0.1319 -1.6214 5.8357 43 1 -0.6612 0.5426 6.7492 44 1 1.0107 0.9719 7.1840 45 1 1.1338 -1.0090 8.6699 46 1 -0.5381 -1.4387 8.2356 47 1 -0.4666 -1.7354 11.9059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172150423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:43 Heat of formation + Delta-G solvation = -77.139390 kcal Electronic energy + Delta-G solvation = -22374.000965 eV Core-core repulsion = 19168.821835 eV Total energy + Delta-G solvation = -3205.179130 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44993 -38.93875 -35.49805 -34.58826 -33.27997 -32.78968 -31.35749 -30.24368 -27.09892 -26.83547 -26.00459 -23.28870 -22.34815 -21.36857 -20.73899 -20.30386 -19.13994 -17.78211 -16.70677 -16.17719 -15.48306 -15.41463 -15.10884 -14.63094 -14.37381 -14.28676 -14.22918 -13.73094 -13.56511 -13.14905 -12.92670 -12.43426 -12.26382 -12.25377 -12.10869 -11.78813 -11.77489 -11.56502 -11.31306 -11.11381 -10.87423 -10.69651 -10.64223 -10.60195 -10.51457 -10.30871 -9.98149 -9.83035 -9.40841 -9.11775 -9.07422 -8.53864 -8.35367 -6.00153 -4.03249 2.88044 3.32893 3.37603 3.39550 3.44364 4.31742 4.34541 4.40068 4.46017 4.59621 4.73416 4.86964 4.98299 5.14603 5.18310 5.21538 5.31416 5.35395 5.40778 5.45189 5.53211 5.60014 5.68988 5.72937 5.74968 5.83835 5.84771 5.85648 5.95005 5.98968 6.04990 6.12416 6.22015 6.26235 6.58077 6.59894 6.65627 6.85952 7.05635 7.15074 7.65544 7.78965 7.98871 8.22855 8.39853 8.83630 9.03291 9.60646 11.11129 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041263 B = 0.002445 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.415556 B =11450.782281 C =11624.766731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 H 0.077 0.923 4 C -0.105 4.105 5 C -0.094 4.094 6 H 0.069 0.931 7 C -0.151 4.151 8 C -0.112 4.112 9 C -0.133 4.133 10 C 0.171 3.829 11 H 0.086 0.914 12 N -0.746 5.746 13 C 0.700 3.300 14 O -0.593 6.593 15 N -0.743 5.743 16 C 0.136 3.864 17 C -0.120 4.120 18 C 0.024 3.976 19 C -0.523 4.523 20 H 0.054 0.946 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.287 1.287 25 H -0.277 1.277 26 H -0.277 1.277 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.392 0.608 40 H 0.393 0.607 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.184 5.028 -27.165 28.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 H 0.095 0.905 4 C -0.143 4.143 5 C -0.113 4.113 6 H 0.088 0.912 7 C -0.208 4.208 8 C -0.150 4.150 9 C -0.171 4.171 10 C 0.066 3.934 11 H 0.104 0.896 12 N -0.401 5.401 13 C 0.400 3.600 14 O -0.471 6.471 15 N -0.397 5.397 16 C 0.012 3.988 17 C -0.158 4.158 18 C -0.013 4.013 19 C -0.561 4.561 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.213 1.213 25 H -0.203 1.203 26 H -0.203 1.203 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.225 0.775 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.435 3.770 -26.924 27.937 hybrid contribution -0.558 1.493 0.831 1.797 sum 5.877 5.263 -26.093 27.259 Atomic orbital electron populations 1.21823 0.94724 1.02257 1.01652 1.21440 0.95983 1.00126 0.94292 0.90515 1.21578 0.95000 1.00856 0.96901 1.21139 0.95342 0.96532 0.98242 0.91222 1.21946 1.00797 0.96220 1.01845 1.21525 1.00340 0.99365 0.93752 1.21987 0.95600 1.01104 0.98450 1.20769 0.93114 0.97164 0.82369 0.89593 1.45209 1.72385 1.13414 1.09142 1.16035 0.78456 0.85192 0.80326 1.90911 1.57173 1.14449 1.84610 1.45393 1.70711 1.13774 1.09850 1.21485 1.01183 0.95197 0.80911 1.21884 0.99606 0.98199 0.96105 1.19023 0.97482 0.95473 0.89371 1.21170 1.44012 0.96355 0.94556 0.92728 1.25035 0.95654 0.95108 0.98689 1.69959 1.48708 1.14175 1.20438 0.86640 0.79408 0.80836 0.80987 1.21277 1.20259 1.20264 0.92424 0.92680 0.92528 0.91595 0.91610 0.92878 0.92947 0.92021 0.91837 0.91707 0.91719 0.91238 0.77475 0.77438 0.92043 0.92049 0.92819 0.92823 0.96260 0.96267 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.04 37.16 0.34 -0.77 16 2 C -0.10 -0.73 2.02 -90.61 -0.18 -0.91 16 3 H 0.08 0.51 6.43 -51.93 -0.33 0.18 16 4 C -0.11 -0.70 4.73 -26.73 -0.13 -0.82 16 5 C -0.09 -0.62 3.19 -90.62 -0.29 -0.91 16 6 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 7 C -0.15 -0.93 8.50 37.16 0.32 -0.61 16 8 C -0.11 -0.90 5.45 -26.73 -0.15 -1.05 16 9 C -0.13 -1.30 5.22 -26.75 -0.14 -1.44 16 10 C 0.17 1.73 1.90 -67.96 -0.13 1.60 16 11 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 12 N -0.75 -8.17 4.39 -58.70 -0.26 -8.42 16 13 C 0.70 10.82 8.53 -86.92 -0.74 10.08 16 14 O -0.59 -11.77 16.01 5.29 0.08 -11.69 16 15 N -0.74 -10.98 5.56 -65.23 -0.36 -11.34 16 16 C 0.14 2.47 5.67 -4.04 -0.02 2.44 16 17 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 18 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 19 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 20 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 23 Si 0.89 21.60 29.54 -169.99 -5.02 16.57 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H 0.06 0.45 7.44 -51.93 -0.39 0.07 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.40 4.81 -51.93 -0.25 0.15 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.39 3.22 8.40 -40.82 -0.34 2.88 16 40 H 0.39 4.62 8.49 -40.82 -0.35 4.27 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 365.06 15.07 5.50 5.50 Total: -1.00 -32.52 365.06 -9.83 -42.35 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -8.69 Total: 1.22 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -1.82 Total: -7.91 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.12 Total: -46.05 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.52 -9.83 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172150423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.791 kcal (2) G-P(sol) polarization free energy of solvation -32.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds