Wall clock time and date at job start Tue Mar 31 2020 06:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47362 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00732 * 2 1 3 5 5 C 1.53002 * 109.46817 * 179.97438 * 4 2 1 6 6 N 1.46507 * 109.46688 * 179.97438 * 5 4 2 7 7 C 1.34778 * 119.99609 * 204.99678 * 6 5 4 8 8 O 1.21589 * 119.99954 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99579 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99547 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47274 * 180.02562 * 10 9 7 12 12 C 1.52991 * 109.47521 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.47401 * 180.02562 * 12 11 10 14 14 H 1.08001 * 119.99741 * 359.97438 * 13 12 11 15 15 C 1.37872 * 120.00342 * 180.02562 * 13 12 11 16 16 N 1.31517 * 120.00045 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 119.99966 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47370 * 89.99845 * 17 15 13 19 19 H 1.48504 * 109.47469 * 209.99863 * 17 15 13 20 20 H 1.48504 * 109.47342 * 329.99629 * 17 15 13 21 21 C 1.52996 * 109.46972 * 299.99733 * 5 4 2 22 22 C 1.52997 * 109.47131 * 60.00459 * 21 5 4 23 23 H 1.08993 * 109.47194 * 60.00154 * 22 21 5 24 24 C 1.53006 * 109.46943 * 179.97438 * 22 21 5 25 25 C 1.52999 * 109.46991 * 299.99311 * 22 21 5 26 26 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46716 * 299.99359 * 1 2 3 28 28 H 1.09000 * 109.47486 * 59.99277 * 1 2 3 29 29 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 30 30 H 1.08996 * 109.46952 * 59.99813 * 4 2 1 31 31 H 1.08996 * 109.47407 * 60.00219 * 5 4 2 32 32 H 0.97001 * 120.00071 * 25.00134 * 6 5 4 33 33 H 0.96996 * 120.00600 * 0.02562 * 9 7 6 34 34 H 1.08998 * 109.47598 * 300.00357 * 10 9 7 35 35 H 1.08999 * 109.47622 * 60.00361 * 10 9 7 36 36 H 1.09007 * 109.46897 * 300.00278 * 11 10 9 37 37 H 1.09006 * 109.47091 * 59.99481 * 11 10 9 38 38 H 1.08998 * 109.47267 * 300.00033 * 12 11 10 39 39 H 1.08999 * 109.47705 * 59.99885 * 12 11 10 40 40 H 0.97006 * 119.99732 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.46993 * 180.02562 * 21 5 4 42 42 H 1.09000 * 109.47380 * 299.99696 * 21 5 4 43 43 H 1.09000 * 109.46866 * 179.97438 * 24 22 21 44 44 H 1.09001 * 109.47372 * 300.00248 * 24 22 21 45 45 H 1.09004 * 109.47107 * 59.99949 * 24 22 21 46 46 H 1.08993 * 109.47839 * 300.00447 * 25 22 21 47 47 H 1.09000 * 109.47160 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5701 -0.7219 1.2487 6 7 4.0584 -1.4121 2.4451 7 6 5.2807 -1.1265 2.9361 8 8 5.9777 -0.2957 2.3864 9 7 5.7297 -1.7611 4.0371 10 6 7.0580 -1.4502 4.5711 11 6 7.3207 -2.3034 5.8136 12 6 8.7076 -1.9783 6.3717 13 6 8.9665 -2.8192 7.5953 14 1 8.2166 -3.5155 7.9405 15 6 10.1603 -2.6988 8.2745 16 7 10.3860 -3.4323 9.3426 17 14 11.4570 -1.4940 7.6778 18 1 11.2419 -0.1746 8.3245 19 1 12.8064 -2.0040 8.0306 20 1 11.3539 -1.3455 6.2038 21 6 4.0794 -1.4434 -0.0006 22 6 3.5694 -0.7220 -1.2498 23 1 3.9331 0.3055 -1.2499 24 6 4.0793 -1.4432 -2.4991 25 6 2.0394 -0.7215 -1.2494 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6768 -0.2076 2.1392 30 1 1.6767 -1.7490 1.2490 31 1 3.9338 0.3056 1.2486 32 1 3.5022 -2.0747 2.8838 33 1 5.1735 -2.4236 4.4758 34 1 7.8133 -1.6670 3.8156 35 1 7.1043 -0.3946 4.8384 36 1 6.5654 -2.0870 6.5693 37 1 7.2746 -3.3591 5.5459 38 1 9.4630 -2.1945 5.6163 39 1 8.7533 -0.9228 6.6396 40 1 11.2258 -3.3473 9.8207 41 1 5.1694 -1.4441 -0.0007 42 1 3.7158 -2.4709 -0.0005 43 1 3.7156 -0.9295 -3.3890 44 1 5.1693 -1.4433 -2.4992 45 1 3.7159 -2.4709 -2.4992 46 1 1.6756 -1.7490 -1.2492 47 1 1.6760 -0.2080 -2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172384061.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:11 Heat of formation + Delta-G solvation = -79.683409 kcal Electronic energy + Delta-G solvation = -22083.493447 eV Core-core repulsion = 18878.204000 eV Total energy + Delta-G solvation = -3205.289447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.30046 -38.88788 -35.62070 -34.50844 -33.79305 -33.26790 -31.52758 -29.93413 -27.05792 -26.82644 -26.61716 -23.20032 -21.83537 -21.07511 -20.70437 -20.36164 -19.95203 -18.04259 -16.82086 -16.17976 -15.59373 -15.41139 -15.18166 -14.75827 -14.56934 -14.36850 -14.01937 -13.83467 -13.67387 -12.97064 -12.81042 -12.72072 -12.66523 -12.27685 -12.08788 -12.00744 -11.88959 -11.60816 -11.30401 -11.10707 -11.04487 -10.88036 -10.82634 -10.69378 -10.42697 -10.21319 -9.97351 -9.79354 -9.64969 -9.21313 -9.16459 -8.63587 -8.54233 -6.05248 -4.03814 2.79208 3.32639 3.35926 3.40073 3.44909 4.26124 4.27953 4.39387 4.45758 4.58045 4.71956 4.74373 5.00699 5.06433 5.12704 5.25109 5.28994 5.30141 5.33396 5.38515 5.49262 5.52328 5.57137 5.58793 5.67076 5.72053 5.77696 5.83411 5.90901 5.93573 6.01410 6.06654 6.11179 6.20188 6.41866 6.49397 6.52446 6.72992 6.85452 7.05714 7.25433 7.38667 7.77137 8.15016 8.51415 8.75188 8.98600 9.57146 11.07967 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035368 B = 0.002481 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.495164 B =11283.797212 C =11683.400149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 H 0.073 0.927 4 C -0.121 4.121 5 C 0.165 3.835 6 N -0.748 5.748 7 C 0.701 3.299 8 O -0.594 6.594 9 N -0.743 5.743 10 C 0.133 3.867 11 C -0.113 4.113 12 C -0.011 4.011 13 C -0.521 4.521 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 C -0.125 4.125 22 C -0.090 4.090 23 H 0.072 0.928 24 C -0.146 4.146 25 C -0.109 4.109 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.393 0.607 33 H 0.395 0.605 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.263 0.737 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.919 4.587 -21.861 30.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.091 0.909 4 C -0.159 4.159 5 C 0.060 3.940 6 N -0.403 5.403 7 C 0.400 3.600 8 O -0.472 6.472 9 N -0.397 5.397 10 C 0.010 3.990 11 C -0.151 4.151 12 C -0.049 4.049 13 C -0.559 4.559 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.163 4.163 22 C -0.109 4.109 23 H 0.090 0.910 24 C -0.204 4.204 25 C -0.147 4.147 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.227 0.773 33 H 0.228 0.772 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.100 5.329 -22.210 30.425 hybrid contribution 0.269 -0.131 0.327 0.443 sum -19.831 5.198 -21.883 29.986 Atomic orbital electron populations 1.21817 0.94946 1.01850 1.01765 1.21072 0.95535 0.99843 0.94334 0.90879 1.21872 0.94173 1.01379 0.98462 1.20753 0.92857 0.97122 0.83299 1.45218 1.17431 1.46226 1.31391 1.16029 0.81581 0.81581 0.80767 1.90907 1.57228 1.37049 1.62034 1.45342 1.20280 1.44827 1.29252 1.21495 0.81401 1.00001 0.96128 1.21702 1.00431 0.98649 0.94279 1.19501 0.91811 0.96915 0.96692 1.21100 1.02670 1.22744 1.09408 0.91033 1.25032 0.98228 0.95653 0.94627 1.69918 1.25192 1.40506 1.18635 0.86771 0.80974 0.81541 0.79989 1.20249 1.21392 1.18853 1.22013 1.01591 0.99230 0.93506 1.21092 0.95142 1.00094 0.94607 0.91000 1.21810 1.01219 1.00289 0.97038 1.21692 0.95013 1.00692 0.97298 0.92668 0.92621 0.92595 0.91301 0.91443 0.89580 0.77334 0.77222 0.92046 0.92041 0.92192 0.92164 0.96288 0.96716 0.92720 0.91220 0.91998 0.92759 0.92553 0.92794 0.91886 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.19 37.16 0.34 -0.45 16 2 C -0.09 -0.57 2.72 -90.62 -0.25 -0.81 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.12 -0.85 4.67 -26.73 -0.12 -0.97 16 5 C 0.17 1.61 2.45 -67.93 -0.17 1.44 16 6 N -0.75 -7.95 5.08 -58.67 -0.30 -8.25 16 7 C 0.70 10.47 8.53 -86.91 -0.74 9.73 16 8 O -0.59 -11.38 16.01 5.29 0.08 -11.30 16 9 N -0.74 -10.50 5.56 -65.23 -0.36 -10.86 16 10 C 0.13 2.27 5.67 -4.04 -0.02 2.25 16 11 C -0.11 -2.12 5.27 -26.74 -0.14 -2.26 16 12 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 13 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 14 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 15 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 17 Si 0.88 21.90 27.47 -169.99 -4.67 17.24 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 20 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 21 C -0.12 -1.18 4.78 -26.73 -0.13 -1.31 16 22 C -0.09 -0.71 2.72 -90.62 -0.25 -0.95 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 25 C -0.11 -0.70 4.48 -26.73 -0.12 -0.82 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 1.04 7.57 -51.93 -0.39 0.65 16 32 H 0.39 3.08 8.62 -40.82 -0.35 2.73 16 33 H 0.39 4.44 8.49 -40.82 -0.35 4.09 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 39 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 369.99 15.07 5.58 5.58 Total: -1.00 -33.01 369.99 -9.75 -42.76 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -9.05 Total: 0.48 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -1.80 Total: -8.53 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.11 Total: -46.22 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.08 Total: -11.30 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.01 -9.75 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172384061.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.928 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds