Wall clock time and date at job start Tue Mar 31 2020 06:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47101 * 2 1 4 4 C 1.52998 * 109.47482 * 120.00856 * 2 1 3 5 5 C 1.52998 * 109.47222 * 59.99379 * 4 2 1 6 6 N 1.46500 * 109.47117 * 179.97438 * 5 4 2 7 7 C 1.34773 * 119.99834 * 155.00068 * 6 5 4 8 8 O 1.21589 * 120.00191 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00355 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00554 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47234 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47016 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47202 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99685 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00216 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00069 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99806 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46845 * 90.00621 * 17 15 13 19 19 H 1.48503 * 109.47399 * 210.00111 * 17 15 13 20 20 H 1.48498 * 109.47295 * 330.00717 * 17 15 13 21 21 C 1.53002 * 109.46756 * 60.00324 * 5 4 2 22 22 C 1.52998 * 109.47364 * 299.99858 * 21 5 4 23 23 H 1.09000 * 109.47210 * 300.00342 * 22 21 5 24 24 C 1.53002 * 109.47364 * 180.02562 * 22 21 5 25 25 C 1.53002 * 109.46883 * 240.00770 * 2 1 3 26 26 H 1.09008 * 109.46953 * 299.99521 * 1 2 3 27 27 H 1.09001 * 109.47696 * 59.99001 * 1 2 3 28 28 H 1.08994 * 109.47250 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46718 * 299.99766 * 4 2 1 30 30 H 1.08993 * 109.47021 * 180.02562 * 4 2 1 31 31 H 1.08994 * 109.47414 * 300.00745 * 5 4 2 32 32 H 0.96999 * 120.00287 * 335.00843 * 6 5 4 33 33 H 0.96999 * 119.99767 * 0.02562 * 9 7 6 34 34 H 1.08999 * 109.47077 * 60.00431 * 10 9 7 35 35 H 1.09001 * 109.47389 * 300.00536 * 10 9 7 36 36 H 1.09008 * 109.47022 * 60.00770 * 11 10 9 37 37 H 1.08996 * 109.47711 * 299.99907 * 11 10 9 38 38 H 1.08999 * 109.47344 * 60.00450 * 12 11 10 39 39 H 1.09001 * 109.47340 * 300.00421 * 12 11 10 40 40 H 0.97000 * 119.99667 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.47236 * 60.00185 * 21 5 4 42 42 H 1.08998 * 109.47343 * 179.97438 * 21 5 4 43 43 H 1.08994 * 109.46815 * 300.00197 * 24 22 21 44 44 H 1.08994 * 109.46890 * 60.00041 * 24 22 21 45 45 H 1.09001 * 109.46768 * 179.97438 * 24 22 21 46 46 H 1.09001 * 109.47291 * 59.99718 * 25 2 1 47 47 H 1.08999 * 109.47404 * 179.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 1.5300 -2.1639 1.2490 6 7 2.0189 -2.8548 2.4447 7 6 1.3424 -3.9117 2.9363 8 8 0.3264 -4.2920 2.3871 9 7 1.7918 -4.5471 4.0366 10 6 1.0561 -5.6955 4.5713 11 6 1.7741 -6.2280 5.8129 12 6 1.0060 -7.4278 6.3709 13 6 1.7128 -7.9520 7.5943 14 1 2.6195 -7.4770 7.9391 15 6 1.2027 -9.0384 8.2729 16 7 1.8199 -9.4961 9.3402 17 14 -0.3650 -9.8603 7.6761 18 1 -0.0234 -10.9370 6.7120 19 1 -1.0896 -10.4439 8.8335 20 1 -1.2284 -8.8535 7.0081 21 6 2.0400 -2.8850 -0.0004 22 6 1.5299 -2.1636 -1.2495 23 1 0.4399 -2.1636 -1.2495 24 6 2.0393 -2.8851 -2.4989 25 6 2.0399 -0.7211 -1.2494 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.6767 -0.2076 2.1392 30 1 3.1300 -0.7210 1.2492 31 1 0.4401 -2.1639 1.2490 32 1 2.8296 -2.5516 2.8828 33 1 2.6020 -4.2434 4.4750 34 1 1.0077 -6.4797 3.8158 35 1 0.0457 -5.3868 4.8397 36 1 1.8227 -5.4440 6.5687 37 1 2.7842 -6.5369 5.5442 38 1 0.9576 -8.2117 5.6151 39 1 -0.0044 -7.1195 6.6396 40 1 1.4607 -10.2602 9.8177 41 1 3.1300 -2.8850 -0.0004 42 1 1.6770 -3.9127 -0.0003 43 1 3.1293 -2.8855 -2.4991 44 1 1.6756 -3.9126 -2.4987 45 1 1.6756 -2.3714 -3.3887 46 1 1.6766 -0.2072 -2.1393 47 1 3.1299 -0.7208 -1.2497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172384068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:16 Heat of formation + Delta-G solvation = -75.315582 kcal Electronic energy + Delta-G solvation = -22286.029883 eV Core-core repulsion = 19080.929839 eV Total energy + Delta-G solvation = -3205.100044 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.42737 -39.02866 -35.61373 -34.49698 -33.43555 -33.26030 -31.49892 -29.76575 -27.14778 -26.92385 -26.73709 -23.24834 -22.13698 -21.39386 -20.80349 -20.26105 -19.14174 -17.89382 -16.87314 -16.42392 -15.62089 -15.41504 -15.10673 -14.69835 -14.34216 -14.26171 -14.06949 -13.85502 -13.73239 -13.48954 -12.85943 -12.67534 -12.48748 -12.22285 -12.01424 -11.88805 -11.84631 -11.61137 -11.34199 -11.21360 -11.04312 -10.88170 -10.79118 -10.64669 -10.23071 -10.18458 -9.97177 -9.79218 -9.64883 -9.21309 -9.15781 -8.63180 -8.54232 -6.05260 -4.03822 2.80216 3.32638 3.36255 3.40075 3.44920 4.25612 4.31740 4.39447 4.45763 4.60499 4.75254 4.77321 4.97493 5.04561 5.12570 5.24431 5.29011 5.34633 5.37247 5.39304 5.49809 5.56341 5.59681 5.65130 5.68831 5.72128 5.78864 5.86800 5.90430 5.94865 6.03096 6.06690 6.13262 6.24163 6.42084 6.49483 6.53403 6.73135 6.85560 7.06048 7.25452 7.38706 7.77171 8.15324 8.51443 8.75485 8.98611 9.57152 11.07991 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.035633 B = 0.002537 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.599462 B =11032.781560 C =11231.910409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.086 4.086 3 H 0.073 0.927 4 C -0.122 4.122 5 C 0.163 3.837 6 N -0.748 5.748 7 C 0.701 3.299 8 O -0.594 6.594 9 N -0.743 5.743 10 C 0.133 3.867 11 C -0.113 4.113 12 C -0.011 4.011 13 C -0.521 4.521 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 C -0.125 4.125 22 C -0.092 4.092 23 H 0.075 0.925 24 C -0.147 4.147 25 C -0.110 4.110 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.393 0.607 33 H 0.394 0.606 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.014 0.986 39 H 0.019 0.981 40 H 0.263 0.737 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.981 20.854 -21.828 30.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.160 4.160 5 C 0.058 3.942 6 N -0.403 5.403 7 C 0.400 3.600 8 O -0.472 6.472 9 N -0.397 5.397 10 C 0.010 3.990 11 C -0.151 4.151 12 C -0.049 4.049 13 C -0.559 4.559 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.188 1.188 21 C -0.164 4.164 22 C -0.111 4.111 23 H 0.093 0.907 24 C -0.204 4.204 25 C -0.148 4.148 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.108 0.892 32 H 0.226 0.774 33 H 0.228 0.772 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.033 0.967 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.002 20.330 -22.175 30.101 hybrid contribution 0.082 -0.312 0.299 0.440 sum 1.084 20.018 -21.876 29.672 Atomic orbital electron populations 1.21990 0.95077 1.02559 1.01649 1.21038 0.96171 0.99017 0.94292 0.90890 1.21844 1.00967 0.94677 0.98523 1.20818 1.00055 0.90084 0.83267 1.45229 1.30092 1.33505 1.31463 1.16027 0.83235 0.79934 0.80765 1.90905 1.26004 1.68271 1.62059 1.45342 1.30466 1.34591 1.29307 1.21493 0.95450 0.85970 0.96108 1.21702 0.99602 0.99460 0.94302 1.19503 0.96103 0.92842 0.96463 1.21102 1.11213 1.14114 1.09505 0.91035 1.25031 0.97120 0.96704 0.94665 1.69915 1.40056 1.25516 1.18775 0.86772 0.84051 0.80040 0.78425 1.20246 1.21391 1.18847 1.22015 1.00672 1.00115 0.93550 1.21138 1.00886 0.94495 0.94545 0.90683 1.21814 1.01049 1.00442 0.97092 1.21662 1.00553 0.95213 0.97351 0.92669 0.92684 0.91743 0.91295 0.91465 0.89190 0.77368 0.77229 0.92055 0.92038 0.92163 0.92195 0.96723 0.96285 0.92717 0.92032 0.91246 0.92815 0.92587 0.92775 0.91894 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.50 37.16 0.32 -0.76 16 2 C -0.09 -0.55 3.19 -90.62 -0.29 -0.84 16 3 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 4 C -0.12 -0.86 4.92 -26.73 -0.13 -0.99 16 5 C 0.16 1.59 2.18 -67.93 -0.15 1.44 16 6 N -0.75 -7.97 5.08 -58.68 -0.30 -8.27 16 7 C 0.70 10.47 8.53 -86.92 -0.74 9.73 16 8 O -0.59 -11.35 16.01 5.29 0.08 -11.27 16 9 N -0.74 -10.50 5.56 -65.23 -0.36 -10.86 16 10 C 0.13 2.27 5.67 -4.05 -0.02 2.25 16 11 C -0.11 -2.12 5.27 -26.73 -0.14 -2.27 16 12 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 13 C -0.52 -14.77 9.66 -34.44 -0.33 -15.11 16 14 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 17 Si 0.88 21.89 27.47 -169.99 -4.67 17.23 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 21 C -0.12 -1.19 4.77 -26.73 -0.13 -1.32 16 22 C -0.09 -0.72 2.44 -90.62 -0.22 -0.94 16 23 H 0.07 0.64 6.43 -51.93 -0.33 0.31 16 24 C -0.15 -1.07 9.20 37.16 0.34 -0.73 16 25 C -0.11 -0.70 4.73 -26.73 -0.13 -0.83 16 26 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.53 4.81 -51.93 -0.25 0.28 16 29 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 1.08 5.86 -51.93 -0.30 0.78 16 32 H 0.39 3.09 8.62 -40.82 -0.35 2.74 16 33 H 0.39 4.44 8.49 -40.82 -0.35 4.10 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 39 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -33.00 362.95 -9.54 -42.54 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -8.70 Total: 1.18 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -1.84 Total: -8.90 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.11 Total: -46.25 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.00 -9.54 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172384068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.777 kcal (2) G-P(sol) polarization free energy of solvation -32.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds