Wall clock time and date at job start Tue Mar 31 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.26431 * 2 1 4 4 C 1.50881 * 109.36533 * 240.31971 * 2 1 3 5 5 C 1.52573 * 109.35992 * 147.92409 * 4 2 1 6 6 C 1.47090 * 114.32613 * 85.00877 * 5 4 2 7 7 C 1.54865 * 110.32721 * 297.20137 * 6 5 4 8 8 H 1.09001 * 109.42867 * 311.24429 * 7 6 5 9 9 C 1.52997 * 109.45416 * 191.30581 * 7 6 5 10 10 N 1.44582 * 109.59610 * 71.26497 * 7 6 5 11 11 C 1.34771 * 118.64361 * 89.26107 * 10 7 6 12 12 O 1.21588 * 120.00130 * 3.90101 * 11 10 7 13 13 N 1.34781 * 120.00048 * 183.91663 * 11 10 7 14 14 C 1.46498 * 119.99991 * 175.00603 * 13 11 10 15 15 C 1.52997 * 109.46962 * 179.97438 * 14 13 11 16 16 C 1.53007 * 109.47087 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.46983 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00407 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99785 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00322 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99934 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47021 * 0.02562 * 21 19 17 23 23 H 1.48509 * 109.46850 * 120.00066 * 21 19 17 24 24 H 1.48498 * 109.46917 * 239.99978 * 21 19 17 25 25 C 1.47609 * 122.71343 * 269.53079 * 10 7 6 26 26 H 1.09003 * 109.47270 * 179.67712 * 1 2 3 27 27 H 1.09001 * 109.47304 * 299.68151 * 1 2 3 28 28 H 1.09003 * 109.47225 * 59.68058 * 1 2 3 29 29 H 1.08998 * 109.49528 * 27.95837 * 4 2 1 30 30 H 1.09002 * 109.49088 * 267.88809 * 4 2 1 31 31 H 1.09001 * 108.51024 * 323.75733 * 5 4 2 32 32 H 1.08997 * 108.51650 * 206.26663 * 5 4 2 33 33 H 1.08999 * 109.32959 * 176.93693 * 6 5 4 34 34 H 1.09004 * 109.32901 * 57.46548 * 6 5 4 35 35 H 1.09000 * 109.47145 * 317.27054 * 9 7 6 36 36 H 1.08996 * 109.47180 * 77.26500 * 9 7 6 37 37 H 1.09002 * 109.47305 * 197.27059 * 9 7 6 38 38 H 0.96996 * 119.99994 * 355.00370 * 13 11 10 39 39 H 1.08999 * 109.47178 * 59.99479 * 14 13 11 40 40 H 1.08995 * 109.47174 * 299.99820 * 14 13 11 41 41 H 1.08998 * 109.47109 * 299.99604 * 15 14 13 42 42 H 1.08999 * 109.47319 * 59.99908 * 15 14 13 43 43 H 1.08995 * 109.47215 * 300.00264 * 16 15 14 44 44 H 1.09009 * 109.47051 * 59.99885 * 16 15 14 45 45 H 0.96993 * 120.00437 * 179.97438 * 20 19 17 46 46 H 1.08996 * 108.94339 * 162.56302 * 25 10 7 47 47 H 1.09005 * 108.94772 * 281.19370 * 25 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8896 1.0289 0.0000 4 6 2.0303 -0.7048 -1.2367 5 6 3.3487 -0.0767 -1.6784 6 6 4.5356 -0.6192 -0.9998 7 6 4.4645 -0.3321 0.5203 8 1 4.2221 0.7186 0.6799 9 6 5.8175 -0.6458 1.1620 10 7 3.4427 -1.1587 1.1227 11 6 3.7846 -2.3811 1.5757 12 8 4.9455 -2.7406 1.5383 13 7 2.8395 -3.2053 2.0698 14 6 3.1916 -4.5727 2.4605 15 6 1.9463 -5.2897 2.9856 16 6 2.3138 -6.7180 3.3931 17 6 1.0873 -7.4240 3.9109 18 1 0.1402 -6.9060 3.9456 19 6 1.1742 -8.7312 4.3405 20 7 2.3275 -9.3619 4.2988 21 14 -0.3463 -9.6067 4.9817 22 1 -1.5092 -8.6848 4.9249 23 1 -0.6205 -10.8011 4.1429 24 1 -0.1180 -10.0303 6.3866 25 6 2.0393 -0.7215 1.2568 26 1 -0.3634 -1.0277 -0.0058 27 1 -0.3634 0.5089 0.8928 28 1 -0.3634 0.5188 -0.8871 29 1 1.2947 -0.6053 -2.0348 30 1 2.1866 -1.7607 -1.0154 31 1 3.3017 0.9957 -1.4890 32 1 3.4630 -0.2304 -2.7514 33 1 5.4311 -0.1551 -1.4132 34 1 4.5831 -1.6961 -1.1617 35 1 6.2050 -1.5797 0.7546 36 1 6.5173 0.1619 0.9478 37 1 5.6943 -0.7434 2.2406 38 1 1.9263 -2.8932 2.1668 39 1 3.9504 -4.5431 3.2424 40 1 3.5822 -5.1085 1.5954 41 1 1.5562 -4.7537 3.8508 42 1 1.1872 -5.3192 2.2039 43 1 2.7038 -7.2537 2.5277 44 1 3.0731 -6.6888 4.1747 45 1 2.3888 -10.2814 4.6013 46 1 1.4129 -1.5941 1.4421 47 1 1.9594 -0.0436 2.1066 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176389268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:40 Heat of formation + Delta-G solvation = -43.563386 kcal Electronic energy + Delta-G solvation = -23208.497798 eV Core-core repulsion = 20004.774632 eV Total energy + Delta-G solvation = -3203.723165 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83960 -38.09191 -35.84500 -34.42770 -34.07582 -33.08269 -31.23601 -29.81322 -26.77598 -26.59529 -26.03593 -23.71716 -22.62865 -21.29027 -20.79019 -20.30350 -19.08083 -17.45659 -16.73460 -16.17704 -15.96424 -15.14084 -14.94067 -14.78042 -14.41698 -14.34257 -13.90903 -13.75704 -13.16996 -13.00757 -12.76974 -12.50989 -12.43108 -12.23215 -12.00530 -11.77766 -11.77036 -11.55258 -11.26398 -11.00806 -10.91031 -10.86161 -10.77417 -10.65895 -10.54459 -10.46649 -9.83929 -9.54540 -9.16603 -9.06619 -8.80393 -8.38274 -8.36099 -6.00673 -4.03626 2.78273 3.30500 3.37953 3.40666 3.41445 3.98551 4.30803 4.45283 4.50080 4.59071 4.78760 4.81870 5.00595 5.20724 5.23353 5.28806 5.35138 5.35340 5.42717 5.48351 5.52409 5.72316 5.75088 5.78256 5.80056 5.85082 5.88726 5.95574 6.00055 6.06685 6.14476 6.22093 6.23992 6.43284 6.56422 6.65554 6.84587 6.90047 7.06900 7.08326 7.65713 7.78661 7.98525 8.14777 8.39632 8.85253 9.03342 9.60491 11.10667 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023132 B = 0.003324 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.173217 B = 8421.522540 C = 9211.044756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 H 0.074 0.926 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.132 4.132 7 C 0.167 3.833 8 H 0.073 0.927 9 C -0.146 4.146 10 N -0.623 5.623 11 C 0.699 3.301 12 O -0.583 6.583 13 N -0.745 5.745 14 C 0.134 3.866 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.115 3.885 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.039 0.961 37 H 0.055 0.945 38 H 0.391 0.609 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.260 0.740 46 H 0.077 0.923 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 22.914 -10.608 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 H 0.092 0.908 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.171 4.171 7 C 0.062 3.938 8 H 0.091 0.909 9 C -0.203 4.203 10 N -0.360 5.360 11 C 0.400 3.600 12 O -0.462 6.462 13 N -0.402 5.402 14 C 0.011 3.989 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.559 4.559 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.009 4.009 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.280 22.473 -10.596 24.848 hybrid contribution -1.360 -0.404 0.417 1.479 sum -1.080 22.070 -10.179 24.328 Atomic orbital electron populations 1.21869 0.94155 1.02418 1.02045 1.21282 0.96129 0.99874 0.94829 0.90759 1.21168 0.96571 1.00617 0.96683 1.20438 0.94810 1.00043 1.00021 1.21302 0.97948 1.02314 0.95560 1.20855 0.88072 0.93255 0.91608 0.90863 1.22268 0.94554 1.02151 1.01336 1.47012 1.08834 1.16080 1.64108 1.16089 0.85145 0.80284 0.78452 1.90898 1.16892 1.75508 1.62854 1.45729 1.11253 1.14489 1.68707 1.21477 0.98949 0.78913 0.99547 1.21881 0.95041 0.99327 0.99549 1.19030 0.97094 0.88449 0.96804 1.21244 0.95273 0.97291 1.42131 0.92630 1.25032 0.95952 0.97611 0.95893 1.69975 1.24033 1.11683 1.47573 0.86537 0.83239 0.79640 0.78570 1.19772 1.21011 1.21005 1.21883 0.81849 0.99561 0.97562 0.92172 0.92412 0.92197 0.91814 0.91475 0.92530 0.92571 0.91154 0.91463 0.89145 0.94188 0.92570 0.77282 0.91973 0.92156 0.92860 0.92910 0.96270 0.96243 0.92995 0.90466 0.92012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.87 37.16 0.33 -0.61 16 2 C -0.10 -0.75 2.54 -91.37 -0.23 -0.99 16 3 H 0.07 0.51 7.32 -51.93 -0.38 0.13 16 4 C -0.11 -0.95 5.02 -28.01 -0.14 -1.10 16 5 C -0.12 -0.95 5.15 -29.79 -0.15 -1.11 16 6 C -0.13 -1.31 4.99 -28.58 -0.14 -1.45 16 7 C 0.17 1.80 2.60 -67.97 -0.18 1.62 16 8 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 9 C -0.15 -1.82 7.76 37.16 0.29 -1.53 16 10 N -0.62 -7.38 2.21 -170.80 -0.38 -7.76 16 11 C 0.70 10.91 7.86 -86.92 -0.68 10.23 16 12 O -0.58 -11.00 12.43 5.29 0.07 -10.94 16 13 N -0.74 -11.28 5.42 -65.23 -0.35 -11.64 16 14 C 0.13 2.44 5.68 -4.04 -0.02 2.42 16 15 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 21 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.11 1.03 5.42 -3.12 -0.02 1.02 16 26 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.06 0.49 7.74 -51.93 -0.40 0.08 16 30 H 0.07 0.72 7.48 -51.93 -0.39 0.33 16 31 H 0.06 0.41 7.36 -51.93 -0.38 0.03 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.09 1.36 6.14 -51.93 -0.32 1.04 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.80 7.49 -51.93 -0.39 0.41 16 38 H 0.39 4.96 5.83 -40.82 -0.24 4.72 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.53 8.14 -51.92 -0.42 0.10 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.08 0.69 5.37 -51.93 -0.28 0.41 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 357.63 15.07 5.39 5.39 Total: -1.00 -31.55 357.63 -9.85 -41.40 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.65 Total: 0.18 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -1.64 Total: -6.95 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.00 Total: -45.59 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.94 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.55 -9.85 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176389268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.165 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds