Wall clock time and date at job start Tue Mar 31 2020 06:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 108.33031 * 2 1 4 4 C 1.52526 * 108.52389 * 117.64831 * 2 1 3 5 5 C 1.50133 * 105.41144 * 210.64864 * 4 2 1 6 6 C 1.54843 * 110.81209 * 262.31609 * 5 4 2 7 7 C 1.54905 * 110.14476 * 38.86799 * 6 5 4 8 8 H 1.08996 * 108.15360 * 279.64126 * 7 6 5 9 9 C 1.52996 * 108.15840 * 163.07288 * 7 6 5 10 10 N 1.43431 * 116.07671 * 41.35800 * 7 6 5 11 11 C 1.34772 * 120.53664 * 88.41658 * 10 7 6 12 12 O 1.21588 * 120.00357 * 354.45681 * 11 10 7 13 13 N 1.34781 * 120.00190 * 174.46170 * 11 10 7 14 14 C 1.46498 * 120.00258 * 185.06210 * 13 11 10 15 15 C 1.53003 * 109.47120 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47145 * 180.02562 * 15 14 13 17 17 C 1.50694 * 109.47006 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00315 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99875 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00107 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00019 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47468 * 89.99869 * 21 19 17 23 23 H 1.48505 * 109.47217 * 209.99796 * 21 19 17 24 24 H 1.48501 * 109.47337 * 329.99834 * 21 19 17 25 25 C 1.46240 * 108.51746 * 242.36486 * 2 1 3 26 26 H 1.08999 * 109.46725 * 302.35350 * 1 2 3 27 27 H 1.09001 * 109.47508 * 62.35242 * 1 2 3 28 28 H 1.08998 * 109.46901 * 182.35827 * 1 2 3 29 29 H 1.09003 * 110.24988 * 91.67684 * 4 2 1 30 30 H 1.08990 * 110.36903 * 329.67900 * 4 2 1 31 31 H 1.09000 * 109.20719 * 141.96966 * 5 4 2 32 32 H 1.08996 * 109.16998 * 22.63199 * 5 4 2 33 33 H 1.09006 * 109.35645 * 159.07068 * 6 5 4 34 34 H 1.08997 * 109.35713 * 278.65927 * 6 5 4 35 35 H 1.09001 * 109.46822 * 70.87479 * 9 7 6 36 36 H 1.09001 * 109.47258 * 190.87498 * 9 7 6 37 37 H 1.08993 * 109.47576 * 310.87819 * 9 7 6 38 38 H 0.97009 * 119.99444 * 5.06511 * 13 11 10 39 39 H 1.08997 * 109.47316 * 300.00096 * 14 13 11 40 40 H 1.09004 * 109.46748 * 60.00401 * 14 13 11 41 41 H 1.09007 * 109.47006 * 299.99597 * 15 14 13 42 42 H 1.08992 * 109.47230 * 59.99841 * 15 14 13 43 43 H 1.09005 * 109.46587 * 299.99948 * 16 15 14 44 44 H 1.09002 * 109.47078 * 59.99520 * 16 15 14 45 45 H 0.97004 * 120.00389 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.84898 * 299.85697 * 25 2 1 47 47 H 1.09004 * 109.84667 * 60.84449 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8728 1.0347 0.0000 4 6 2.0145 -0.6711 1.2811 5 6 3.3220 -0.0095 1.6082 6 6 4.5117 -0.8642 1.1066 7 6 4.1755 -1.4913 -0.2694 8 1 3.5553 -2.3713 -0.0992 9 6 5.4829 -1.9561 -0.9139 10 7 3.4959 -0.6389 -1.2015 11 6 4.1936 0.1533 -2.0394 12 8 5.4034 0.2255 -1.9418 13 7 3.5503 0.8657 -2.9856 14 6 4.3152 1.6396 -3.9665 15 6 3.3515 2.3499 -4.9193 16 6 4.1503 3.1577 -5.9441 17 6 3.2011 3.8578 -6.8821 18 1 2.1348 3.7382 -6.7598 19 6 3.6941 4.6510 -7.8964 20 7 4.9926 4.7970 -8.0450 21 14 2.5175 5.5183 -9.0595 22 1 2.1787 6.8571 -8.5136 23 1 3.1607 5.6741 -10.3890 24 1 1.2777 4.7131 -9.2008 25 6 1.9944 -0.6432 -1.2285 26 1 -0.3633 0.5500 0.8681 27 1 -0.3634 0.4769 -0.9103 28 1 -0.3633 -1.0268 0.0423 29 1 2.1628 -1.7382 1.1152 30 1 1.2988 -0.5111 2.0873 31 1 3.4003 0.1156 2.6881 32 1 3.3571 0.9695 1.1303 33 1 5.3948 -0.2326 1.0097 34 1 4.7147 -1.6580 1.8255 35 1 5.8631 -2.8256 -0.3778 36 1 5.3003 -2.2222 -1.9550 37 1 6.2168 -1.1515 -0.8679 38 1 2.5807 0.8659 -3.0170 39 1 4.9255 2.3798 -3.4492 40 1 4.9604 0.9695 -4.5347 41 1 2.7408 1.6100 -5.4367 42 1 2.7065 3.0200 -4.3509 43 1 4.7613 3.8976 -5.4269 44 1 4.7950 2.4873 -6.5124 45 1 5.3394 5.3554 -8.7583 46 1 1.6280 -1.6689 -1.2706 47 1 1.6383 -0.0863 -2.0952 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176389284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:43 Heat of formation + Delta-G solvation = -42.256719 kcal Electronic energy + Delta-G solvation = -23192.098648 eV Core-core repulsion = 19988.432144 eV Total energy + Delta-G solvation = -3203.666504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84392 -38.24286 -35.84434 -34.46459 -33.91519 -33.02715 -31.17243 -29.77719 -26.83731 -26.49282 -26.04877 -23.78224 -22.67820 -21.41660 -20.58415 -20.42033 -19.11041 -17.39756 -16.69893 -16.14967 -15.72882 -15.14071 -14.95715 -14.78233 -14.52400 -14.39216 -14.04800 -13.84935 -13.13858 -12.88876 -12.69591 -12.53469 -12.45687 -12.23370 -11.91849 -11.78958 -11.74861 -11.49010 -11.39059 -11.03821 -10.89052 -10.70381 -10.67550 -10.65932 -10.57000 -10.48171 -9.83815 -9.58347 -9.25989 -9.09788 -8.84385 -8.39897 -8.35820 -6.00492 -4.03543 2.74067 3.31406 3.37746 3.40350 3.40878 3.94891 4.32248 4.45411 4.59824 4.63840 4.76907 4.86977 4.95372 5.09258 5.23538 5.31431 5.35224 5.37060 5.42686 5.46269 5.53567 5.65878 5.72792 5.75268 5.82387 5.85093 5.88434 5.95726 6.00658 6.07377 6.12938 6.17372 6.22132 6.38117 6.54663 6.65518 6.79786 6.90967 7.06908 7.12449 7.65510 7.78733 7.98569 8.14771 8.39658 8.86599 9.03187 9.60491 11.10807 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024556 B = 0.003263 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.957395 B = 8578.590479 C = 9367.556853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 H 0.074 0.926 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.130 4.130 7 C 0.166 3.834 8 H 0.069 0.931 9 C -0.160 4.160 10 N -0.625 5.625 11 C 0.705 3.295 12 O -0.584 6.584 13 N -0.744 5.744 14 C 0.135 3.865 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.121 3.879 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.391 0.609 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.261 0.739 46 H 0.075 0.925 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.781 -14.161 19.816 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.136 4.136 3 H 0.093 0.907 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.169 4.169 7 C 0.060 3.940 8 H 0.087 0.913 9 C -0.218 4.218 10 N -0.363 5.363 11 C 0.406 3.594 12 O -0.462 6.462 13 N -0.400 5.400 14 C 0.012 3.988 15 C -0.158 4.158 16 C -0.013 4.013 17 C -0.560 4.560 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.001 4.001 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.226 0.774 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.717 -14.021 19.715 25.108 hybrid contribution -1.143 0.592 -0.701 1.466 sum -7.860 -13.430 19.015 24.570 Atomic orbital electron populations 1.21955 0.94709 1.01975 1.02237 1.20553 0.96225 1.01227 0.95569 0.90716 1.21110 0.97029 1.00116 0.96505 1.21538 0.94404 0.99499 1.00272 1.22706 0.98563 0.99751 0.95920 1.20378 0.94203 0.90863 0.88568 0.91302 1.22392 0.98081 1.01442 0.99865 1.47342 1.05627 1.45321 1.37998 1.15947 0.85248 0.78815 0.79348 1.90861 1.12138 1.68962 1.74274 1.45616 1.09813 1.51805 1.32804 1.21480 0.94622 0.93928 0.88808 1.21882 0.98157 0.98705 0.97051 1.19024 0.95258 0.94516 0.92544 1.21203 0.93005 1.28546 1.13268 0.92685 1.25029 0.95064 0.96695 0.97683 1.69966 1.11571 1.39200 1.32527 0.86588 0.81032 0.79983 0.80338 1.20673 1.21215 1.19903 1.21052 0.79381 1.01675 0.97967 0.92360 0.92421 0.92511 0.91282 0.91459 0.92615 0.91929 0.91354 0.91322 0.93632 0.92934 0.89086 0.77380 0.91997 0.92128 0.92881 0.92874 0.96261 0.96259 0.92937 0.90639 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.87 37.16 0.33 -0.62 16 2 C -0.12 -0.91 2.21 -94.08 -0.21 -1.12 16 3 H 0.07 0.72 6.93 -51.93 -0.36 0.36 16 4 C -0.11 -0.81 5.19 -28.40 -0.15 -0.96 16 5 C -0.12 -1.06 5.65 -27.19 -0.15 -1.22 16 6 C -0.13 -1.27 5.72 -24.75 -0.14 -1.41 16 7 C 0.17 1.77 2.15 -68.55 -0.15 1.62 16 8 H 0.07 0.61 6.89 -51.93 -0.36 0.26 16 9 C -0.16 -1.99 7.77 37.16 0.29 -1.70 16 10 N -0.63 -7.37 2.49 -173.53 -0.43 -7.80 16 11 C 0.70 11.06 7.74 -86.92 -0.67 10.39 16 12 O -0.58 -11.19 13.17 5.29 0.07 -11.12 16 13 N -0.74 -11.28 5.47 -65.22 -0.36 -11.64 16 14 C 0.13 2.46 5.68 -4.04 -0.02 2.44 16 15 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 21 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.12 1.04 5.13 -5.20 -0.03 1.02 16 26 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 27 H 0.06 0.37 8.13 -51.93 -0.42 -0.06 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.48 6.29 -51.93 -0.33 0.15 16 30 H 0.07 0.44 7.81 -51.93 -0.41 0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.68 6.82 -51.93 -0.35 0.32 16 33 H 0.07 0.80 7.81 -51.93 -0.41 0.40 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.73 7.77 -51.93 -0.40 0.33 16 37 H 0.09 1.38 5.88 -51.93 -0.31 1.08 16 38 H 0.39 4.92 5.96 -40.82 -0.24 4.67 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 47 H 0.08 0.69 5.69 -51.93 -0.30 0.39 16 LS Contribution 355.88 15.07 5.36 5.36 Total: -1.00 -31.85 355.88 -9.72 -41.57 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -8.49 Total: 0.36 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.59 Total: -7.03 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.05 Total: -45.67 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.12 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.85 -9.72 -41.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176389284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.682 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds