Wall clock time and date at job start Tue Mar 31 2020 06:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 108.32761 * 2 1 4 4 C 1.52520 * 108.52419 * 242.35907 * 2 1 3 5 5 C 1.50118 * 105.41802 * 149.35143 * 4 2 1 6 6 C 1.54841 * 110.81701 * 97.68185 * 5 4 2 7 7 C 1.54900 * 110.14196 * 321.13510 * 6 5 4 8 8 H 1.09002 * 108.15700 * 80.35521 * 7 6 5 9 9 C 1.53002 * 108.15901 * 196.92542 * 7 6 5 10 10 N 1.43439 * 116.08089 * 318.63901 * 7 6 5 11 11 C 1.34776 * 120.53523 * 271.29253 * 10 7 6 12 12 O 1.21586 * 120.00393 * 355.18993 * 11 10 7 13 13 N 1.34782 * 119.99582 * 175.18770 * 11 10 7 14 14 C 1.46497 * 119.99772 * 184.97352 * 13 11 10 15 15 C 1.52996 * 109.47207 * 179.97438 * 14 13 11 16 16 C 1.53003 * 109.47535 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47458 * 179.97438 * 16 15 14 18 18 H 1.08005 * 119.99514 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00118 * 179.97438 * 17 16 15 20 20 N 1.31517 * 119.99754 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99996 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47326 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47416 * 120.00056 * 21 19 17 24 24 H 1.48500 * 109.47001 * 240.00013 * 21 19 17 25 25 C 1.46241 * 108.51987 * 117.63837 * 2 1 3 26 26 H 1.09000 * 109.47391 * 177.64625 * 1 2 3 27 27 H 1.09007 * 109.47268 * 297.64372 * 1 2 3 28 28 H 1.09000 * 109.47221 * 57.64112 * 1 2 3 29 29 H 1.09000 * 110.24739 * 30.37491 * 4 2 1 30 30 H 1.09006 * 110.25078 * 268.32392 * 4 2 1 31 31 H 1.09003 * 109.20700 * 337.34064 * 5 4 2 32 32 H 1.08995 * 109.17447 * 218.00668 * 5 4 2 33 33 H 1.09000 * 109.35778 * 200.93101 * 6 5 4 34 34 H 1.08994 * 109.24821 * 81.27344 * 6 5 4 35 35 H 1.09001 * 109.46936 * 170.71173 * 9 7 6 36 36 H 1.09003 * 109.46859 * 290.70209 * 9 7 6 37 37 H 1.08996 * 109.47615 * 50.70740 * 9 7 6 38 38 H 0.97003 * 120.00226 * 4.97064 * 13 11 10 39 39 H 1.08998 * 109.46922 * 299.99869 * 14 13 11 40 40 H 1.09000 * 109.47261 * 59.99657 * 14 13 11 41 41 H 1.09003 * 109.47222 * 300.00295 * 15 14 13 42 42 H 1.09000 * 109.47230 * 59.99712 * 15 14 13 43 43 H 1.08998 * 109.46769 * 300.00050 * 16 15 14 44 44 H 1.09000 * 109.47086 * 59.99637 * 16 15 14 45 45 H 0.96997 * 119.99681 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.84878 * 60.14447 * 25 2 1 47 47 H 1.09002 * 109.84648 * 299.15693 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8728 1.0347 0.0000 4 6 2.0146 -0.6709 -1.2811 5 6 3.3219 -0.0095 -1.6082 6 6 4.5117 -0.8642 -1.1068 7 6 4.1755 -1.4912 0.2691 8 1 3.5553 -2.3713 0.0989 9 6 5.4830 -1.9561 0.9135 10 7 3.4960 -0.6389 1.2015 11 6 4.1938 0.1488 2.0434 12 8 5.4071 0.0773 2.0780 13 7 3.5467 1.0160 2.8471 14 6 4.3078 1.9481 3.6826 15 6 3.3405 2.8148 4.4912 16 6 4.1353 3.7879 5.3642 17 6 3.1824 4.6420 6.1602 18 1 2.1165 4.5042 6.0543 19 6 3.6714 5.5986 7.0244 20 7 4.9695 5.7653 7.1544 21 14 2.4903 6.6567 8.0116 22 1 1.0928 6.2730 7.6876 23 1 2.7357 6.4518 9.4617 24 1 2.7034 8.0863 7.6707 25 6 1.9945 -0.6433 1.2284 26 1 -0.3634 -1.0268 -0.0422 27 1 -0.3634 0.4768 0.9104 28 1 -0.3634 0.5500 -0.8681 29 1 1.2979 -0.5088 -2.0862 30 1 2.1628 -1.7381 -1.1154 31 1 3.3576 0.9699 -1.1309 32 1 3.3997 0.1150 -2.6882 33 1 5.3948 -0.2326 -1.0099 34 1 4.7123 -1.6579 -1.8263 35 1 5.2949 -2.2491 1.9464 36 1 5.8778 -2.8084 0.3604 37 1 6.2078 -1.1423 0.8929 38 1 2.5770 1.0229 2.8723 39 1 4.9484 1.3866 4.3626 40 1 4.9228 2.5860 3.0477 41 1 2.7002 3.3763 3.8108 42 1 2.7252 2.1772 5.1260 43 1 4.7752 3.2260 6.0446 44 1 4.7509 4.4256 4.7298 45 1 5.3135 6.4385 7.7621 46 1 1.6281 -1.6690 1.2705 47 1 1.6384 -0.0865 2.0952 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176389303.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:46 Heat of formation + Delta-G solvation = -40.088975 kcal Electronic energy + Delta-G solvation = -23231.389922 eV Core-core repulsion = 20027.817418 eV Total energy + Delta-G solvation = -3203.572504 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85524 -38.24587 -35.87222 -34.44674 -33.90720 -33.03524 -31.18580 -29.75233 -26.83279 -26.48630 -26.04363 -23.77741 -22.68496 -21.40562 -20.58091 -20.43005 -19.13197 -17.40075 -16.67544 -16.14121 -15.76692 -15.16251 -14.92899 -14.78943 -14.52421 -14.40372 -14.02334 -13.74843 -13.21947 -12.88322 -12.70313 -12.53215 -12.46315 -12.24455 -11.94354 -11.78949 -11.72415 -11.55725 -11.34876 -11.02411 -10.90826 -10.70410 -10.67968 -10.64971 -10.54563 -10.48637 -9.84075 -9.55129 -9.18060 -9.07364 -8.84355 -8.40021 -8.36257 -6.00798 -4.03732 2.73389 3.30424 3.37895 3.41295 3.41338 3.94207 4.33015 4.45308 4.60007 4.63901 4.77290 4.87341 4.95445 5.09202 5.24177 5.31846 5.35044 5.37662 5.42804 5.46523 5.54655 5.66695 5.74852 5.75515 5.82968 5.84966 5.88916 5.96803 6.01195 6.08654 6.13308 6.17919 6.22055 6.39859 6.54769 6.65362 6.82575 6.91145 7.07086 7.12202 7.65600 7.78545 7.98429 8.14460 8.39511 8.86606 9.03219 9.60379 11.10556 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.003329 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.069523 B = 8409.816191 C = 9189.842741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 H 0.076 0.924 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.131 4.131 7 C 0.164 3.836 8 H 0.068 0.932 9 C -0.155 4.155 10 N -0.625 5.625 11 C 0.705 3.295 12 O -0.584 6.584 13 N -0.744 5.744 14 C 0.135 3.865 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.122 3.878 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.091 0.909 38 H 0.390 0.610 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.260 0.740 46 H 0.075 0.925 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.745 -16.137 -17.961 25.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.136 4.136 3 H 0.094 0.906 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.170 4.170 7 C 0.058 3.942 8 H 0.086 0.914 9 C -0.213 4.213 10 N -0.363 5.363 11 C 0.407 3.593 12 O -0.462 6.462 13 N -0.400 5.400 14 C 0.012 3.988 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.559 4.559 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.000 4.000 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.226 0.774 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.038 0.962 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.686 -16.056 -17.811 24.894 hybrid contribution -1.142 0.713 0.592 1.470 sum -7.827 -15.343 -17.219 24.355 Atomic orbital electron populations 1.21958 0.94722 1.01943 1.02263 1.20559 0.96223 1.01295 0.95552 0.90613 1.21108 0.97014 1.00097 0.96525 1.21541 0.94406 0.99501 1.00311 1.22721 0.98500 0.99771 0.96002 1.20408 0.94370 0.90888 0.88486 0.91382 1.22426 0.97777 1.01353 0.99725 1.47294 1.05629 1.45640 1.37691 1.15982 0.85282 0.78985 0.79098 1.90876 1.11827 1.71500 1.72001 1.45637 1.09788 1.38729 1.45867 1.21477 0.94685 0.90154 0.92517 1.21880 0.98117 0.97716 0.98072 1.19029 0.95296 0.93090 0.93969 1.21243 0.93028 1.18093 1.23573 0.92633 1.25032 0.95072 0.97364 0.97030 1.69980 1.11661 1.34191 1.37426 0.86533 0.81212 0.80284 0.79937 1.19775 1.21011 1.21008 1.21050 0.79331 1.01645 0.98002 0.92547 0.92418 0.92341 0.91447 0.91282 0.91889 0.92598 0.91477 0.91237 0.92829 0.94112 0.89022 0.77417 0.91979 0.92151 0.92894 0.92872 0.96238 0.96272 0.92999 0.90655 0.89945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.87 37.16 0.33 -0.63 16 2 C -0.12 -0.92 2.21 -94.08 -0.21 -1.12 16 3 H 0.08 0.73 6.93 -51.93 -0.36 0.37 16 4 C -0.11 -0.81 5.19 -28.41 -0.15 -0.96 16 5 C -0.12 -1.07 5.65 -27.19 -0.15 -1.22 16 6 C -0.13 -1.27 5.72 -24.76 -0.14 -1.41 16 7 C 0.16 1.76 2.21 -68.55 -0.15 1.61 16 8 H 0.07 0.61 6.89 -51.93 -0.36 0.25 16 9 C -0.16 -1.95 7.67 37.16 0.28 -1.66 16 10 N -0.63 -7.36 2.50 -173.52 -0.43 -7.79 16 11 C 0.70 11.04 7.93 -86.91 -0.69 10.35 16 12 O -0.58 -11.15 12.71 5.29 0.07 -11.08 16 13 N -0.74 -11.25 5.47 -65.23 -0.36 -11.61 16 14 C 0.13 2.46 5.68 -4.04 -0.02 2.43 16 15 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.61 9.11 -34.44 -0.31 -14.93 16 18 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 21 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C 0.12 1.05 5.07 -5.20 -0.03 1.02 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.37 8.13 -51.92 -0.42 -0.05 16 28 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.07 0.44 7.80 -51.93 -0.41 0.04 16 30 H 0.07 0.48 6.29 -51.93 -0.33 0.16 16 31 H 0.06 0.68 6.83 -51.93 -0.35 0.32 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.78 7.84 -51.93 -0.41 0.37 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.76 7.68 -51.93 -0.40 0.36 16 36 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 1.40 5.88 -51.93 -0.31 1.10 16 38 H 0.39 4.91 6.00 -40.82 -0.24 4.66 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 47 H 0.08 0.68 5.80 -51.93 -0.30 0.38 16 LS Contribution 355.58 15.07 5.36 5.36 Total: -1.00 -31.78 355.58 -9.76 -41.54 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -8.49 Total: 0.32 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.62 Total: -7.05 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.05 Total: -45.60 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.07 Total: -11.08 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.78 -9.76 -41.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176389303.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.450 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds