Wall clock time and date at job start Tue Mar 31 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 108.85200 * 2 1 4 4 C 1.54289 * 109.14032 * 241.18979 * 2 1 3 5 5 C 1.50883 * 110.23698 * 199.01368 * 4 2 1 6 6 C 1.52570 * 109.36349 * 91.79587 * 5 4 2 7 7 C 1.47091 * 114.32325 * 274.99152 * 6 5 4 8 8 H 1.09001 * 109.32900 * 302.53777 * 7 6 5 9 9 C 1.52999 * 109.32796 * 183.05734 * 7 6 5 10 10 C 1.54869 * 110.32464 * 62.79810 * 7 6 5 11 11 N 1.44579 * 109.60072 * 288.73062 * 10 7 6 12 12 C 1.34770 * 118.64742 * 270.70481 * 11 10 7 13 13 O 1.21578 * 120.00319 * 179.97438 * 12 11 10 14 14 N 1.34781 * 119.99742 * 0.02562 * 12 11 10 15 15 C 1.46495 * 120.00121 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.47351 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47303 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47525 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99441 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00075 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00481 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99886 * 179.73007 * 20 18 17 23 23 H 1.48494 * 109.47225 * 180.27306 * 22 20 18 24 24 H 1.48506 * 109.46866 * 300.27330 * 22 20 18 25 25 H 1.48498 * 109.47306 * 60.26614 * 22 20 18 26 26 H 1.09004 * 109.47217 * 301.31242 * 1 2 3 27 27 H 1.08994 * 109.47323 * 61.32073 * 1 2 3 28 28 H 1.09005 * 109.46946 * 181.31783 * 1 2 3 29 29 H 1.09003 * 109.37365 * 78.72930 * 4 2 1 30 30 H 1.08999 * 109.22500 * 319.19751 * 4 2 1 31 31 H 1.08999 * 109.49039 * 331.82844 * 5 4 2 32 32 H 1.09005 * 109.48976 * 211.76275 * 5 4 2 33 33 H 1.08993 * 108.51130 * 153.73421 * 6 5 4 34 34 H 1.09003 * 108.38685 * 36.15174 * 6 5 4 35 35 H 1.09001 * 109.47129 * 299.13308 * 9 7 6 36 36 H 1.09000 * 109.46676 * 59.13240 * 9 7 6 37 37 H 1.08997 * 109.47101 * 179.12758 * 9 7 6 38 38 H 1.08997 * 109.44781 * 168.68963 * 10 7 6 39 39 H 1.09003 * 109.44809 * 48.77141 * 10 7 6 40 40 H 0.97003 * 120.00055 * 359.97438 * 14 12 11 41 41 H 1.09000 * 109.47717 * 59.99291 * 15 14 12 42 42 H 1.09007 * 109.47063 * 299.99781 * 15 14 12 43 43 H 1.08995 * 109.47540 * 59.99717 * 16 15 14 44 44 H 1.09001 * 109.46719 * 299.99517 * 16 15 14 45 45 H 1.09009 * 109.47378 * 59.99763 * 17 16 15 46 46 H 1.08998 * 109.47458 * 300.00225 * 17 16 15 47 47 H 0.97005 * 119.99656 * 359.72741 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8822 1.0316 0.0000 4 6 2.0359 -0.7024 -1.2772 5 6 3.4714 -1.1327 -1.1024 6 6 3.5099 -2.5600 -0.5647 7 6 3.3974 -2.6594 0.8985 8 1 4.1983 -2.0832 1.3619 9 6 3.5250 -4.1253 1.3178 10 6 2.0297 -2.1082 1.3716 11 7 2.0093 -0.6700 1.2248 12 6 2.4406 0.0904 2.2505 13 8 2.4346 1.3022 2.1535 14 7 2.8795 -0.4928 3.3836 15 6 3.3478 0.3336 4.4989 16 6 3.7865 -0.5691 5.6536 17 6 4.2762 0.2940 6.8181 18 6 4.7077 -0.5951 7.9558 19 1 4.6398 -1.6686 7.8578 20 6 5.1890 -0.0383 9.1216 21 7 5.2721 1.2688 9.2407 22 14 5.7168 -1.1403 10.5346 23 1 6.1864 -0.3024 11.6671 24 1 4.5641 -1.9667 10.9750 25 1 6.8191 -2.0280 10.0851 26 1 -0.3634 0.5341 0.8780 27 1 -0.3634 0.4931 -0.9015 28 1 -0.3633 -1.0274 0.0236 29 1 1.9646 -0.0152 -2.1202 30 1 1.4175 -1.5782 -1.4740 31 1 3.9680 -0.4652 -0.3981 32 1 3.9828 -1.0925 -2.0642 33 1 4.4489 -3.0203 -0.8718 34 1 2.6887 -3.1188 -1.0137 35 1 2.7215 -4.7045 0.8630 36 1 4.4871 -4.5156 0.9859 37 1 3.4575 -4.1999 2.4031 38 1 1.8761 -2.3683 2.4189 39 1 1.2339 -2.5459 0.7689 40 1 2.8846 -1.4597 3.4609 41 1 2.5398 0.9842 4.8335 42 1 4.1915 0.9413 4.1715 43 1 4.5944 -1.2199 5.3194 44 1 2.9425 -1.1764 5.9808 45 1 3.4685 0.9452 7.1526 46 1 5.1202 0.9010 6.4907 47 1 4.9984 1.8411 8.5068 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176389312.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:48 Heat of formation + Delta-G solvation = -62.835322 kcal Electronic energy + Delta-G solvation = -23223.747632 eV Core-core repulsion = 20019.188773 eV Total energy + Delta-G solvation = -3204.558859 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78204 -38.19516 -35.81249 -34.76510 -34.09790 -33.21566 -31.06641 -30.10224 -26.65147 -26.56714 -26.06179 -23.37682 -22.74050 -21.19222 -20.86036 -20.60353 -19.00790 -18.00907 -16.94553 -16.56543 -15.78652 -15.09952 -14.96802 -14.79690 -14.44753 -13.97747 -13.72317 -13.65164 -13.49678 -13.21985 -12.89854 -12.83416 -12.60636 -12.30638 -12.16341 -11.81722 -11.66577 -11.57886 -11.49666 -11.01810 -10.92054 -10.82093 -10.78385 -10.72778 -10.51189 -10.17127 -10.03270 -9.98319 -9.71795 -8.91551 -8.55990 -8.46702 -8.32191 -6.35394 -4.05003 2.70277 3.33594 3.43889 3.45983 3.64910 3.99637 4.35883 4.46360 4.55476 4.60001 4.63164 4.73449 4.99169 5.14475 5.16312 5.22128 5.30250 5.34802 5.41828 5.49490 5.50348 5.56452 5.58939 5.62351 5.66640 5.74126 5.83692 5.87905 5.92164 5.94930 6.03361 6.08720 6.10404 6.17332 6.46298 6.52531 6.59027 6.76300 6.91087 7.02403 7.38419 7.51048 8.09202 8.20282 8.46190 8.74852 8.88730 9.67596 11.05402 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024617 B = 0.003331 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.165939 B = 8404.817245 C = 9108.580595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 H 0.098 0.902 4 C -0.124 4.124 5 C -0.117 4.117 6 C -0.109 4.109 7 C -0.114 4.114 8 H 0.074 0.926 9 C -0.147 4.147 10 C 0.117 3.883 11 N -0.620 5.620 12 C 0.699 3.301 13 O -0.593 6.593 14 N -0.742 5.742 15 C 0.134 3.866 16 C -0.113 4.113 17 C 0.011 3.989 18 C -0.603 4.603 19 H 0.048 0.952 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 1.069 2.931 23 H -0.282 1.282 24 H -0.288 1.288 25 H -0.288 1.288 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.394 0.606 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.010 0.990 46 H 0.010 0.990 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.659 -9.951 -22.932 26.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.050 3.950 3 H 0.116 0.884 4 C -0.162 4.162 5 C -0.155 4.155 6 C -0.147 4.147 7 C -0.134 4.134 8 H 0.093 0.907 9 C -0.204 4.204 10 C -0.007 4.007 11 N -0.356 5.356 12 C 0.401 3.599 13 O -0.472 6.472 14 N -0.397 5.397 15 C 0.010 3.990 16 C -0.151 4.151 17 C -0.026 4.026 18 C -0.642 4.642 19 H 0.067 0.933 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.898 3.102 23 H -0.208 1.208 24 H -0.215 1.215 25 H -0.215 1.215 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.229 0.771 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.062 -9.029 -21.452 24.322 hybrid contribution -0.627 -0.632 -1.542 1.780 sum -7.689 -9.660 -22.994 26.099 Atomic orbital electron populations 1.22182 0.95569 1.01831 1.02344 1.21352 0.93418 0.97701 0.82548 0.88418 1.21869 0.96751 1.00839 0.96759 1.21051 0.96566 0.96866 1.01024 1.20464 1.01965 0.96843 0.95377 1.20905 0.98470 0.97099 0.96934 0.90741 1.21818 1.01952 0.94944 1.01733 1.21534 0.97095 0.80756 1.01356 1.46947 1.68132 1.05375 1.15150 1.16036 0.78176 0.85365 0.80369 1.90888 1.62250 1.12136 1.81907 1.45547 1.68918 1.10179 1.15100 1.21486 0.98832 0.93679 0.84987 1.21739 1.00068 0.98497 0.94762 1.19151 0.95664 0.95403 0.92429 1.22014 1.47146 0.93930 1.01060 0.93329 1.25860 0.94689 0.98082 1.00353 1.70776 1.45031 1.03602 1.35414 0.83540 0.76349 0.74654 0.75696 1.20756 1.21465 1.21468 0.92194 0.91697 0.92752 0.90839 0.91617 0.91431 0.91971 0.92413 0.92332 0.92578 0.92319 0.92158 0.90869 0.90407 0.77068 0.92116 0.92093 0.92659 0.92681 0.97171 0.97169 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.35 37.16 0.35 -1.12 16 2 C 0.15 1.61 2.64 -66.65 -0.18 1.43 16 3 H 0.10 1.27 6.95 -51.93 -0.36 0.91 16 4 C -0.12 -0.97 5.09 -27.12 -0.14 -1.11 16 5 C -0.12 -1.00 5.51 -28.01 -0.15 -1.16 16 6 C -0.11 -0.85 4.39 -29.79 -0.13 -0.98 16 7 C -0.11 -0.97 2.61 -92.47 -0.24 -1.21 16 8 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 9 C -0.15 -1.06 9.10 37.16 0.34 -0.72 16 10 C 0.12 1.06 4.41 -4.08 -0.02 1.04 16 11 N -0.62 -7.32 1.83 -170.52 -0.31 -7.63 16 12 C 0.70 11.19 8.22 -86.92 -0.71 10.47 16 13 O -0.59 -11.88 15.62 5.30 0.08 -11.80 16 14 N -0.74 -11.39 5.39 -65.23 -0.35 -11.75 16 15 C 0.13 2.46 5.67 -4.05 -0.02 2.44 16 16 C -0.11 -2.27 5.27 -26.73 -0.14 -2.41 16 17 C 0.01 0.29 4.28 -27.88 -0.12 0.17 16 18 C -0.60 -17.22 9.11 -34.44 -0.31 -17.53 16 19 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 20 C 0.01 0.41 5.46 -17.82 -0.10 0.31 16 21 N -0.91 -28.32 13.65 55.43 0.76 -27.56 16 22 Si 1.07 25.34 29.90 -169.99 -5.08 20.26 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.44 7.86 -51.93 -0.41 0.03 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.45 7.16 -51.93 -0.37 0.08 16 31 H 0.07 0.75 7.49 -51.93 -0.39 0.36 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 34 H 0.06 0.40 7.35 -51.93 -0.38 0.02 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.66 6.20 -51.93 -0.32 0.34 16 39 H 0.08 0.59 7.79 -51.93 -0.40 0.19 16 40 H 0.39 5.08 6.09 -40.82 -0.25 4.83 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.01 0.27 8.01 -51.92 -0.42 -0.15 16 46 H 0.01 0.27 8.00 -51.93 -0.42 -0.14 16 47 H 0.27 8.35 7.22 -40.82 -0.29 8.06 16 LS Contribution 362.50 15.07 5.46 5.46 Total: -1.00 -33.07 362.50 -9.73 -42.81 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.71 Total: 0.59 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -1.58 Total: -10.38 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.09 Total: -46.93 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.08 Total: -11.80 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.08 Total: 20.26 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.07 -9.73 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176389312.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.028 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds