Wall clock time and date at job start Tue Mar 31 2020 06:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.35699 * 2 1 4 4 C 1.54841 * 109.35649 * 240.27403 * 2 1 3 5 5 C 1.50129 * 110.81385 * 200.92627 * 4 2 1 6 6 H 1.08996 * 110.37276 * 338.65174 * 5 4 2 7 7 C 1.53003 * 110.25076 * 216.65664 * 5 4 2 8 8 C 1.52527 * 105.41444 * 97.68965 * 5 4 2 9 9 C 1.46243 * 114.27110 * 270.59128 * 8 5 4 10 10 N 1.50167 * 107.53099 * 58.41129 * 9 8 5 11 11 C 1.34783 * 120.53663 * 109.56619 * 10 9 8 12 12 O 1.21578 * 120.00055 * 4.55024 * 11 10 9 13 13 N 1.34782 * 119.99482 * 184.55130 * 11 10 9 14 14 C 1.46494 * 119.99425 * 174.84613 * 13 11 10 15 15 C 1.53004 * 109.46901 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.46917 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46880 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00029 * 359.72562 * 17 16 15 19 19 C 1.37872 * 120.00043 * 179.97438 * 17 16 15 20 20 N 1.31520 * 120.00000 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 120.00190 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46709 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46956 * 120.00204 * 21 19 17 24 24 H 1.48498 * 109.47168 * 240.00364 * 21 19 17 25 25 C 1.43437 * 118.92588 * 289.83270 * 10 9 8 26 26 H 1.09003 * 109.47022 * 179.72664 * 1 2 3 27 27 H 1.08997 * 109.46903 * 299.71969 * 1 2 3 28 28 H 1.09002 * 109.47115 * 59.72775 * 1 2 3 29 29 H 1.09001 * 109.20516 * 80.58484 * 4 2 1 30 30 H 1.09000 * 109.21599 * 321.27238 * 4 2 1 31 31 H 1.08999 * 109.46950 * 304.02586 * 7 5 4 32 32 H 1.09008 * 109.46921 * 64.01796 * 7 5 4 33 33 H 1.08995 * 109.47222 * 184.02085 * 7 5 4 34 34 H 1.08992 * 108.52486 * 149.35116 * 8 5 4 35 35 H 1.08999 * 108.52491 * 31.83002 * 8 5 4 36 36 H 1.08996 * 109.84802 * 298.89842 * 9 8 5 37 37 H 1.09004 * 109.83779 * 177.91371 * 9 8 5 38 38 H 0.96992 * 120.00147 * 354.83785 * 13 11 10 39 39 H 1.08994 * 109.48027 * 59.99531 * 14 13 11 40 40 H 1.09004 * 109.47070 * 299.99659 * 14 13 11 41 41 H 1.09000 * 109.47538 * 59.99568 * 15 14 13 42 42 H 1.08998 * 109.46515 * 299.99319 * 15 14 13 43 43 H 1.09000 * 109.47088 * 59.99636 * 16 15 14 44 44 H 1.08990 * 109.47400 * 299.99489 * 16 15 14 45 45 H 0.96997 * 119.99886 * 179.97438 * 20 19 17 46 46 H 1.08995 * 108.15937 * 213.03290 * 25 10 9 47 47 H 1.08996 * 108.15597 * 329.60433 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8914 1.0284 0.0000 4 6 2.0433 -0.7244 -1.2686 5 6 3.4568 -1.1938 -1.0799 6 1 3.9425 -0.6257 -0.2866 7 6 4.2403 -1.0534 -2.3865 8 6 3.3468 -2.6631 -0.6857 9 6 3.2340 -2.8924 0.7542 10 7 2.0174 -2.1554 1.2357 11 6 0.9187 -2.8301 1.6282 12 8 0.9350 -4.0450 1.6730 13 7 -0.1982 -2.1580 1.9710 14 6 -1.4259 -2.8915 2.2886 15 6 -2.5358 -1.8993 2.6417 16 6 -3.8182 -2.6653 2.9728 17 6 -4.9113 -1.6880 3.3212 18 1 -4.7100 -0.6270 3.3121 19 6 -6.1667 -2.1487 3.6565 20 7 -6.4104 -3.4410 3.6727 21 14 -7.5219 -0.9373 4.0876 22 1 -6.9952 0.4481 3.9947 23 1 -8.6526 -1.1013 3.1391 24 1 -7.9950 -1.1957 5.4713 25 6 2.0416 -0.7215 1.2656 26 1 -0.3633 -1.0277 -0.0049 27 1 -0.3633 0.5095 0.8925 28 1 -0.3633 0.5181 -0.8875 29 1 2.0033 -0.0380 -2.1144 30 1 1.4046 -1.5834 -1.4744 31 1 3.7260 -1.5973 -3.1788 32 1 4.3112 0.0004 -2.6563 33 1 5.2418 -1.4631 -2.2554 34 1 4.2298 -3.1869 -1.0516 35 1 2.4695 -3.0879 -1.1737 36 1 4.1214 -2.5122 1.2601 37 1 3.1229 -3.9587 0.9514 38 1 -0.1890 -1.1888 2.0076 39 1 -1.2455 -3.5523 3.1364 40 1 -1.7293 -3.4832 1.4249 41 1 -2.7161 -1.2388 1.7936 42 1 -2.2326 -1.3073 3.5052 43 1 -3.6382 -3.3260 3.8208 44 1 -4.1213 -3.2570 2.1091 45 1 -7.2935 -3.7651 3.9090 46 1 1.4357 -0.3891 2.1085 47 1 3.0683 -0.4028 1.4456 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179029097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:57 Heat of formation + Delta-G solvation = -51.878944 kcal Electronic energy + Delta-G solvation = -23294.052364 eV Core-core repulsion = 20089.968609 eV Total energy + Delta-G solvation = -3204.083755 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.74982 -38.32560 -35.60235 -34.78570 -33.95244 -33.07544 -31.12185 -29.63366 -27.10419 -26.70114 -26.10085 -23.71285 -22.62764 -21.44168 -20.54560 -20.17213 -18.90382 -17.79710 -16.57894 -16.23709 -15.96882 -15.09334 -15.04321 -14.66853 -14.48308 -14.21049 -13.82783 -13.69369 -13.46825 -13.29436 -12.82682 -12.61861 -12.38540 -12.27806 -11.98860 -11.77352 -11.59818 -11.55770 -11.37202 -10.90758 -10.88452 -10.71879 -10.69605 -10.61369 -10.54949 -10.51853 -9.89483 -9.83412 -9.40587 -9.08938 -8.85272 -8.38756 -8.35784 -6.00334 -4.03225 2.72307 3.30695 3.38150 3.41180 3.41681 4.12221 4.35892 4.45641 4.49709 4.55195 4.76133 4.83904 4.91819 5.10622 5.21696 5.31976 5.35501 5.37065 5.41203 5.47276 5.55971 5.60800 5.64472 5.74004 5.77053 5.85032 5.85248 5.91012 5.95962 6.03135 6.09087 6.18118 6.22284 6.23074 6.50169 6.60341 6.65887 6.86815 7.06282 7.12802 7.66255 7.79230 7.98991 8.18145 8.40017 8.81251 9.03767 9.60873 11.11020 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.029990 B = 0.003234 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.408095 B = 8655.641338 C = 9212.847285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.111 4.111 3 H 0.080 0.920 4 C -0.109 4.109 5 C -0.091 4.091 6 H 0.075 0.925 7 C -0.143 4.143 8 C -0.139 4.139 9 C 0.137 3.863 10 N -0.626 5.626 11 C 0.704 3.296 12 O -0.594 6.594 13 N -0.743 5.743 14 C 0.133 3.867 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.521 4.521 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.114 3.886 26 H 0.067 0.933 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.395 0.605 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.260 0.740 46 H 0.064 0.936 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.592 7.701 -9.784 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.131 4.131 3 H 0.098 0.902 4 C -0.146 4.146 5 C -0.109 4.109 6 H 0.094 0.906 7 C -0.200 4.200 8 C -0.177 4.177 9 C 0.015 3.985 10 N -0.364 5.364 11 C 0.405 3.595 12 O -0.472 6.472 13 N -0.400 5.400 14 C 0.010 3.990 15 C -0.158 4.158 16 C -0.013 4.013 17 C -0.559 4.559 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.011 4.011 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.232 0.768 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 22.427 6.650 -9.706 25.326 hybrid contribution -0.911 1.181 0.216 1.507 sum 21.516 7.830 -9.490 24.785 Atomic orbital electron populations 1.22116 0.94664 1.03133 1.02008 1.22284 0.96423 0.99174 0.95188 0.90190 1.21689 0.95617 1.00402 0.96906 1.20597 0.96173 0.96169 0.97954 0.90625 1.21859 0.99656 1.01483 0.97021 1.20973 1.02776 0.96708 0.97217 1.20798 0.85478 0.98692 0.93503 1.47260 1.14190 1.05409 1.69558 1.15959 0.80096 0.85338 0.78059 1.90888 1.83358 1.11804 1.61163 1.45756 1.10574 1.10178 1.73500 1.21499 0.81916 0.95165 1.00455 1.21882 0.95809 0.97878 1.00198 1.19026 0.89734 0.95460 0.97125 1.21243 0.95321 0.93117 1.46211 0.92626 1.25032 0.98737 0.95108 0.95621 1.69980 1.21997 1.12512 1.48788 0.86539 0.82038 0.81392 0.78032 1.19765 1.21018 1.21015 1.20991 1.01999 0.81118 0.97014 0.91377 0.92356 0.92389 0.92377 0.91678 0.92724 0.92713 0.92750 0.91442 0.91431 0.91297 0.88601 0.76816 0.91975 0.92109 0.92835 0.92895 0.96260 0.96256 0.93002 0.91803 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 7.70 37.16 0.29 -1.34 16 2 C -0.11 -0.92 3.17 -88.91 -0.28 -1.21 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.93 4.66 -27.19 -0.13 -1.05 16 5 C -0.09 -0.67 2.49 -92.29 -0.23 -0.90 16 6 H 0.08 0.52 6.30 -51.93 -0.33 0.19 16 7 C -0.14 -0.91 8.83 37.16 0.33 -0.58 16 8 C -0.14 -1.19 4.75 -30.18 -0.14 -1.33 16 9 C 0.14 1.36 6.02 -5.20 -0.03 1.33 16 10 N -0.63 -7.42 2.58 -181.60 -0.47 -7.89 16 11 C 0.70 11.34 8.03 -86.91 -0.70 10.64 16 12 O -0.59 -11.97 15.83 5.30 0.08 -11.88 16 13 N -0.74 -11.48 3.99 -65.23 -0.26 -11.74 16 14 C 0.13 2.45 5.68 -4.04 -0.02 2.43 16 15 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 16 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 17 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 21 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.11 1.04 4.27 -4.93 -0.02 1.02 16 26 H 0.07 0.84 6.31 -51.93 -0.33 0.52 16 27 H 0.06 0.56 7.54 -51.93 -0.39 0.17 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.46 7.72 -51.93 -0.40 0.06 16 30 H 0.06 0.70 6.65 -51.93 -0.35 0.35 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 33 H 0.05 0.31 8.11 -51.93 -0.42 -0.11 16 34 H 0.07 0.49 7.80 -51.93 -0.40 0.08 16 35 H 0.07 0.72 6.93 -51.93 -0.36 0.36 16 36 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 37 H 0.10 1.14 7.11 -51.93 -0.37 0.77 16 38 H 0.39 5.21 4.20 -40.82 -0.17 5.04 16 39 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.06 0.59 6.40 -51.93 -0.33 0.26 16 47 H 0.07 0.53 6.90 -51.93 -0.36 0.17 16 LS Contribution 354.51 15.07 5.34 5.34 Total: -1.00 -32.33 354.51 -9.62 -41.95 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -8.40 Total: 0.36 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: -1.63 Total: -6.44 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.01 Total: -45.88 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.33 -9.62 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179029097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.928 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds