Wall clock time and date at job start Tue Mar 31 2020 06:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 108.56983 * 2 1 4 4 C 1.51002 * 108.61895 * 117.94335 * 2 1 3 5 5 C 1.55154 * 108.70330 * 213.99998 * 4 2 1 6 6 N 1.40521 * 110.18783 * 288.50877 * 5 4 2 7 7 C 1.34772 * 118.49910 * 239.08043 * 6 5 4 8 8 O 1.21585 * 120.00025 * 4.79638 * 7 6 5 9 9 N 1.34776 * 119.99882 * 184.51955 * 7 6 5 10 10 C 1.46495 * 120.00315 * 175.09641 * 9 7 6 11 11 C 1.52997 * 109.47448 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47385 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47147 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00389 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99859 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00205 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00115 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47075 * 89.99809 * 17 15 13 19 19 H 1.48493 * 109.47474 * 209.99616 * 17 15 13 20 20 H 1.48505 * 109.47047 * 330.00042 * 17 15 13 21 21 C 1.47419 * 122.99535 * 59.35778 * 6 5 4 22 22 C 1.51550 * 106.30855 * 280.70921 * 21 6 5 23 23 H 1.08999 * 108.93984 * 329.43032 * 22 21 6 24 24 C 1.53001 * 108.91073 * 210.75157 * 22 21 6 25 25 C 1.52846 * 112.14836 * 90.10095 * 22 21 6 26 26 H 1.09005 * 109.47378 * 302.05769 * 1 2 3 27 27 H 1.09003 * 109.47191 * 62.05580 * 1 2 3 28 28 H 1.08994 * 109.47302 * 182.05763 * 1 2 3 29 29 H 1.08997 * 109.59712 * 94.23710 * 4 2 1 30 30 H 1.08999 * 109.59914 * 333.76338 * 4 2 1 31 31 H 1.08992 * 109.35483 * 168.28580 * 5 4 2 32 32 H 1.09001 * 109.35235 * 48.72334 * 5 4 2 33 33 H 0.97005 * 120.00170 * 355.09445 * 9 7 6 34 34 H 1.09005 * 109.46966 * 299.99939 * 10 9 7 35 35 H 1.09002 * 109.47249 * 59.99607 * 10 9 7 36 36 H 1.08996 * 109.47060 * 300.00116 * 11 10 9 37 37 H 1.09002 * 109.47289 * 59.99542 * 11 10 9 38 38 H 1.08996 * 109.47344 * 300.00221 * 12 11 10 39 39 H 1.09002 * 109.47053 * 59.99677 * 12 11 10 40 40 H 0.96994 * 120.00460 * 180.02562 * 16 15 13 41 41 H 1.08996 * 110.02916 * 39.91163 * 21 6 5 42 42 H 1.09000 * 110.02467 * 161.37763 * 21 6 5 43 43 H 1.09000 * 109.47071 * 297.40282 * 24 22 21 44 44 H 1.09007 * 109.47040 * 57.39644 * 24 22 21 45 45 H 1.08999 * 109.47455 * 177.39297 * 24 22 21 46 46 H 1.08999 * 108.76526 * 197.07031 * 25 22 21 47 47 H 1.09005 * 108.66841 * 78.85139 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8771 1.0332 0.0000 4 6 2.0121 -0.6706 1.2642 5 6 3.3255 0.0168 1.7221 6 7 4.3777 -0.3207 0.8539 7 6 5.4601 -0.9396 1.3654 8 8 5.4744 -1.2719 2.5349 9 7 6.5245 -1.1952 0.5792 10 6 7.7415 -1.7698 1.1578 11 6 8.7890 -1.9584 0.0587 12 6 10.0603 -2.5580 0.6632 13 6 11.0918 -2.7444 -0.4195 14 1 10.8636 -2.4630 -1.4370 15 6 12.3272 -3.2732 -0.1110 16 7 13.2272 -3.4363 -1.0559 17 14 12.7221 -3.7593 1.6488 18 1 12.3366 -5.1763 1.8693 19 1 14.1782 -3.5989 1.8919 20 1 11.9652 -2.8891 2.5844 21 6 4.3540 -0.0232 -0.5897 22 6 3.4899 -1.0909 -1.2301 23 1 3.5785 -2.0111 -0.6526 24 6 3.9916 -1.3477 -2.6525 25 6 2.0183 -0.6823 -1.2895 26 1 -0.3634 0.5455 0.8710 27 1 -0.3634 0.4816 -0.9079 28 1 -0.3633 -1.0269 0.0369 29 1 2.2007 -1.7262 1.0690 30 1 1.2560 -0.5697 2.0427 31 1 3.5715 -0.3109 2.7321 32 1 3.1875 1.0980 1.7191 33 1 6.4848 -0.9987 -0.3699 34 1 8.1334 -1.0975 1.9211 35 1 7.5091 -2.7348 1.6083 36 1 8.3974 -2.6305 -0.7048 37 1 9.0213 -0.9933 -0.3913 38 1 10.4517 -1.8856 1.4266 39 1 9.8282 -3.5231 1.1136 40 1 14.0961 -3.8087 -0.8390 41 1 3.9205 0.9621 -0.7608 42 1 5.3648 -0.0631 -0.9957 43 1 3.8857 -0.4388 -3.2448 44 1 5.0413 -1.6400 -2.6203 45 1 3.4056 -2.1472 -3.1058 46 1 1.4141 -1.5722 -1.4658 47 1 1.8805 0.0054 -2.1239 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179029108.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:00 Heat of formation + Delta-G solvation = -51.697739 kcal Electronic energy + Delta-G solvation = -22935.507143 eV Core-core repulsion = 19731.431246 eV Total energy + Delta-G solvation = -3204.075897 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.90921 -38.37782 -35.72934 -34.88426 -34.24024 -33.20703 -31.43782 -29.23873 -27.13670 -26.87870 -26.50607 -23.79048 -22.36585 -21.76235 -20.58632 -19.62408 -19.36953 -18.20728 -16.80829 -16.40942 -15.97083 -15.70813 -14.94367 -14.72296 -14.39657 -14.08800 -13.95203 -13.87510 -13.60006 -13.05914 -12.88419 -12.68551 -12.67850 -12.45144 -12.16918 -11.94688 -11.85585 -11.59160 -11.47015 -11.24719 -11.02179 -10.87965 -10.78509 -10.70828 -10.46415 -10.16588 -9.96411 -9.80358 -9.65657 -9.21748 -8.96109 -8.54743 -8.47252 -6.05575 -4.04154 2.79884 3.26534 3.32450 3.39927 3.44655 3.90337 4.36593 4.41188 4.45495 4.53005 4.61488 4.75991 4.97042 5.04108 5.19649 5.24466 5.26539 5.28741 5.34619 5.40711 5.43087 5.50927 5.56954 5.63372 5.69236 5.71664 5.75108 5.80704 5.85606 5.92555 6.00505 6.05878 6.07091 6.19687 6.40418 6.48582 6.61291 6.77955 6.85457 6.98860 7.24793 7.38194 7.76610 8.01527 8.50996 8.70666 8.98241 9.56860 11.07680 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031262 B = 0.003120 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.430245 B = 8971.225978 C = 9659.411919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 H 0.066 0.934 4 C -0.131 4.131 5 C 0.124 3.876 6 N -0.620 5.620 7 C 0.696 3.304 8 O -0.592 6.592 9 N -0.741 5.741 10 C 0.131 3.869 11 C -0.112 4.112 12 C -0.011 4.011 13 C -0.521 4.521 14 H 0.072 0.928 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.264 1.264 21 C 0.117 3.883 22 C -0.112 4.112 23 H 0.076 0.924 24 C -0.151 4.151 25 C -0.103 4.103 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.055 0.945 33 H 0.394 0.606 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.015 0.985 40 H 0.263 0.737 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.897 8.545 -0.698 27.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.084 0.916 4 C -0.170 4.170 5 C -0.001 4.001 6 N -0.356 5.356 7 C 0.398 3.602 8 O -0.471 6.471 9 N -0.398 5.398 10 C 0.007 3.993 11 C -0.150 4.150 12 C -0.049 4.049 13 C -0.559 4.559 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.707 3.293 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.189 1.189 21 C -0.006 4.006 22 C -0.132 4.132 23 H 0.095 0.905 24 C -0.209 4.209 25 C -0.141 4.141 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.231 0.769 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.693 8.264 0.141 26.990 hybrid contribution 0.262 -0.226 0.244 0.424 sum -25.431 8.037 0.386 26.674 Atomic orbital electron populations 1.21951 0.95382 1.01706 1.01499 1.20992 0.95528 0.99998 0.94642 0.91586 1.22100 0.97260 1.00674 0.96923 1.20683 0.85867 0.98210 0.95371 1.45891 1.18175 1.62773 1.08734 1.16098 0.80344 0.78768 0.85028 1.90889 1.81892 1.58270 1.16001 1.45542 1.14431 1.68317 1.11490 1.21519 0.82626 0.98046 0.97065 1.21698 0.95344 1.01263 0.96740 1.19498 0.92587 0.95683 0.97105 1.21097 0.97173 1.42086 0.95570 0.91029 1.25025 0.96193 0.95105 0.97162 1.69907 1.06104 1.45544 1.32704 0.86777 0.77412 0.79426 0.85702 1.20243 1.21398 1.18852 1.21643 1.00351 0.98945 0.79620 1.21419 0.95128 0.99561 0.97080 0.90544 1.21928 1.01554 1.01829 0.95556 1.21739 0.94903 1.00465 0.96996 0.92698 0.92945 0.92779 0.91371 0.90942 0.88549 0.92698 0.76916 0.92068 0.91918 0.92206 0.92207 0.96286 0.96711 0.92711 0.90163 0.89830 0.92400 0.92087 0.92408 0.92129 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 8.76 37.16 0.33 -0.57 16 2 C -0.09 -0.65 2.15 -91.19 -0.20 -0.84 16 3 H 0.07 0.46 6.85 -51.93 -0.36 0.10 16 4 C -0.13 -1.10 5.25 -26.60 -0.14 -1.24 16 5 C 0.12 1.28 5.90 -5.99 -0.04 1.25 16 6 N -0.62 -7.07 2.36 -182.65 -0.43 -7.50 16 7 C 0.70 10.68 8.19 -86.92 -0.71 9.97 16 8 O -0.59 -11.43 15.46 5.29 0.08 -11.35 16 9 N -0.74 -10.73 5.42 -65.23 -0.35 -11.08 16 10 C 0.13 2.24 5.68 -4.05 -0.02 2.21 16 11 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 12 C -0.01 -0.25 4.04 -27.88 -0.11 -0.37 16 13 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 14 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 17 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 21 C 0.12 1.00 5.18 -4.27 -0.02 0.98 16 22 C -0.11 -0.89 2.26 -91.43 -0.21 -1.10 16 23 H 0.08 0.78 7.41 -51.93 -0.38 0.39 16 24 C -0.15 -1.08 8.88 37.16 0.33 -0.75 16 25 C -0.10 -0.71 4.53 -26.37 -0.12 -0.83 16 26 H 0.05 0.31 8.07 -51.93 -0.42 -0.11 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.68 7.33 -51.93 -0.38 0.30 16 30 H 0.07 0.54 7.68 -51.93 -0.40 0.14 16 31 H 0.10 1.22 6.60 -51.93 -0.34 0.87 16 32 H 0.05 0.49 7.76 -51.93 -0.40 0.09 16 33 H 0.39 4.72 5.85 -40.82 -0.24 4.48 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 39 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.08 0.58 7.25 -51.93 -0.38 0.20 16 42 H 0.08 0.69 5.27 -51.93 -0.27 0.42 16 43 H 0.06 0.36 8.10 -51.93 -0.42 -0.06 16 44 H 0.06 0.47 8.04 -51.93 -0.42 0.05 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.43 7.98 -51.93 -0.41 0.02 16 47 H 0.06 0.38 7.93 -51.93 -0.41 -0.03 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -32.56 356.84 -9.25 -41.81 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.55 Total: -0.65 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: -1.48 Total: -6.75 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.01 Total: -45.61 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.56 -9.25 -41.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179029108.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.887 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds