Wall clock time and date at job start Tue Mar 31 2020 06:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.51108 * 2 1 4 4 C 1.50887 * 109.48619 * 120.05431 * 2 1 3 5 5 C 1.54299 * 110.23213 * 211.76332 * 4 2 1 6 6 N 1.47597 * 111.94568 * 319.70522 * 5 4 2 7 7 C 1.34775 * 118.64931 * 137.77926 * 6 5 4 8 8 O 1.21588 * 119.99523 * 4.94022 * 7 6 5 9 9 N 1.34773 * 120.00538 * 184.94587 * 7 6 5 10 10 C 1.46501 * 119.99893 * 175.02657 * 9 7 6 11 11 C 1.53001 * 109.46602 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47011 * 179.97438 * 11 10 9 13 13 C 1.50691 * 109.47474 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00179 * 0.02562 * 13 12 11 15 15 C 1.37880 * 120.00320 * 179.72502 * 13 12 11 16 16 N 1.31513 * 119.99693 * 0.27747 * 15 13 12 17 17 Si 1.86800 * 120.00153 * 180.27847 * 15 13 12 18 18 H 1.48505 * 109.47216 * 59.99940 * 17 15 13 19 19 H 1.48500 * 109.47184 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47003 * 299.99877 * 17 15 13 21 21 C 1.44587 * 122.71189 * 317.49487 * 6 5 4 22 22 C 1.54866 * 109.59608 * 90.98516 * 21 6 5 23 23 H 1.09000 * 109.32848 * 48.99892 * 22 21 6 24 24 C 1.53001 * 109.32676 * 168.64529 * 22 21 6 25 25 C 1.47084 * 110.32512 * 288.73363 * 22 21 6 26 26 H 1.08999 * 109.47183 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47160 * 300.05821 * 1 2 3 28 28 H 1.09000 * 109.46601 * 60.06072 * 1 2 3 29 29 H 1.08997 * 109.36905 * 332.04714 * 4 2 1 30 30 H 1.08997 * 109.36114 * 91.79227 * 4 2 1 31 31 H 1.09001 * 109.13552 * 199.01385 * 5 4 2 32 32 H 1.08997 * 108.95668 * 80.27189 * 5 4 2 33 33 H 0.96999 * 119.99901 * 355.01911 * 9 7 6 34 34 H 1.09007 * 109.46934 * 60.00017 * 10 9 7 35 35 H 1.08992 * 109.47141 * 299.99523 * 10 9 7 36 36 H 1.08999 * 109.47116 * 60.00365 * 11 10 9 37 37 H 1.08994 * 109.47968 * 299.99740 * 11 10 9 38 38 H 1.08999 * 109.46800 * 60.00273 * 12 11 10 39 39 H 1.09006 * 109.47182 * 300.00335 * 12 11 10 40 40 H 0.97003 * 119.99549 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.44782 * 211.02556 * 21 6 5 42 42 H 1.08991 * 109.44973 * 330.97676 * 21 6 5 43 43 H 1.09002 * 109.47247 * 59.99714 * 24 22 21 44 44 H 1.09003 * 109.47322 * 180.02562 * 24 22 21 45 45 H 1.09001 * 109.46897 * 300.00286 * 24 22 21 46 46 H 1.09003 * 108.51781 * 184.05659 * 25 22 21 47 47 H 1.08998 * 108.51455 * 301.70385 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0334 -0.7124 1.2312 5 6 3.3718 -0.0990 1.6929 6 7 4.2523 0.2250 0.5535 7 6 4.9271 1.3915 0.5696 8 8 4.8746 2.1106 1.5486 9 7 5.6600 1.7610 -0.4994 10 6 6.3046 3.0763 -0.5263 11 6 7.0688 3.2428 -1.8413 12 6 7.7415 4.6167 -1.8698 13 6 8.4937 4.7810 -3.1652 14 1 8.4918 3.9853 -3.8955 15 6 9.1793 5.9496 -3.4209 16 7 9.1812 6.9188 -2.5319 17 14 10.1053 6.1563 -5.0301 18 1 9.1556 6.0416 -6.1660 19 1 10.7543 7.4916 -5.0597 20 1 11.1426 5.0997 -5.1435 21 6 4.4254 -0.6602 -0.5766 22 6 3.3866 -0.3136 -1.6717 23 1 3.3985 0.7611 -1.8531 24 6 3.7482 -1.0492 -2.9636 25 6 2.0392 -0.7204 -1.2448 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5147 0.8895 28 1 -0.3632 0.5129 -0.8906 29 1 1.2977 -0.6176 2.0298 30 1 2.1842 -1.7673 1.0020 31 1 3.8831 -0.8069 2.3452 32 1 3.1685 0.8133 2.2536 33 1 5.7607 1.1560 -1.2509 34 1 6.9990 3.1577 0.3099 35 1 5.5458 3.8545 -0.4457 36 1 6.3747 3.1611 -2.6778 37 1 7.8277 2.4646 -1.9217 38 1 8.4356 4.6987 -1.0334 39 1 6.9823 5.3948 -1.7897 40 1 9.6633 7.7411 -2.7120 41 1 5.4311 -0.5416 -0.9798 42 1 4.2825 -1.6917 -0.2549 43 1 3.7432 -2.1242 -2.7833 44 1 3.0187 -0.8066 -3.7363 45 1 4.7408 -0.7406 -3.2918 46 1 1.3446 -0.5302 -2.0630 47 1 2.0488 -1.7914 -1.0425 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179029129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:05 Heat of formation + Delta-G solvation = -60.519848 kcal Electronic energy + Delta-G solvation = -23053.481762 eV Core-core repulsion = 19849.023310 eV Total energy + Delta-G solvation = -3204.458453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67905 -38.35996 -35.53495 -34.80091 -34.17586 -33.17420 -31.15372 -29.30559 -27.03524 -26.62779 -26.26580 -23.73856 -22.63180 -21.05915 -20.60675 -20.32912 -19.16721 -17.86760 -16.83774 -16.22695 -15.70043 -15.25688 -15.00909 -14.54023 -14.45088 -14.26560 -13.96194 -13.66200 -13.38173 -13.24252 -12.90060 -12.70703 -12.37845 -12.22820 -12.07901 -11.80880 -11.72846 -11.55854 -11.34109 -10.96227 -10.86299 -10.76453 -10.69435 -10.64811 -10.62144 -10.59756 -9.95481 -9.82930 -9.40643 -9.11528 -8.85592 -8.39779 -8.35111 -5.99940 -4.03019 2.76940 3.32961 3.37719 3.38327 3.39573 4.05986 4.36187 4.45459 4.47380 4.59649 4.67952 4.73894 5.01673 5.12030 5.20351 5.29656 5.35659 5.36516 5.38417 5.46903 5.52529 5.57949 5.61034 5.71311 5.75645 5.79512 5.84050 5.85326 5.90044 5.99702 6.07866 6.11147 6.22325 6.25523 6.55141 6.61121 6.65792 6.84993 7.05830 7.07858 7.65799 7.79278 7.99087 8.14198 8.40102 8.79378 9.03495 9.60890 11.11350 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024398 B = 0.003228 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.353557 B = 8672.134212 C = 9223.173188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.074 0.926 4 C -0.126 4.126 5 C 0.130 3.870 6 N -0.626 5.626 7 C 0.698 3.302 8 O -0.593 6.593 9 N -0.741 5.741 10 C 0.134 3.866 11 C -0.120 4.120 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.118 3.882 22 C -0.115 4.115 23 H 0.076 0.924 24 C -0.146 4.146 25 C -0.105 4.105 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.393 0.607 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.262 0.738 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.970 -19.881 3.696 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.092 0.908 4 C -0.164 4.164 5 C 0.007 3.993 6 N -0.363 5.363 7 C 0.400 3.600 8 O -0.471 6.471 9 N -0.397 5.397 10 C 0.010 3.990 11 C -0.158 4.158 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.007 4.007 22 C -0.135 4.135 23 H 0.094 0.906 24 C -0.204 4.204 25 C -0.142 4.142 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.229 0.771 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.944 -19.158 4.463 25.321 hybrid contribution 0.586 -0.142 -1.337 1.467 sum -15.358 -19.299 3.126 24.862 Atomic orbital electron populations 1.21897 0.95127 1.01458 1.01732 1.20621 0.95248 1.00604 0.94424 0.90774 1.21928 0.96381 0.99756 0.98331 1.21711 0.89170 1.01426 0.86949 1.46868 1.47816 1.19403 1.22176 1.16052 0.79100 0.81282 0.83608 1.90896 1.68299 1.54347 1.33582 1.45570 1.54410 1.20158 1.19583 1.21503 0.96006 0.81647 0.99806 1.21880 0.98289 1.01826 0.93772 1.19017 0.95361 0.89607 0.97312 1.21169 1.31150 1.00941 1.02828 0.92726 1.25028 0.96613 0.95994 0.96815 1.69959 1.42684 1.05970 1.34664 0.86647 0.80061 0.77217 0.83989 1.20254 1.21282 1.20257 1.21543 0.98428 0.94434 0.86245 1.20913 0.95776 1.01578 0.95231 0.90572 1.21816 1.02020 1.00140 0.96445 1.20532 0.96183 0.99983 0.97511 0.92866 0.92671 0.92784 0.90632 0.91789 0.92434 0.89270 0.77124 0.91960 0.92093 0.92851 0.92846 0.96256 0.96274 0.92881 0.90821 0.90434 0.92609 0.92324 0.92129 0.92255 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.82 37.16 0.33 -0.74 16 2 C -0.09 -0.78 2.34 -91.90 -0.21 -0.99 16 3 H 0.07 0.84 7.49 -51.93 -0.39 0.45 16 4 C -0.13 -0.98 5.24 -27.11 -0.14 -1.12 16 5 C 0.13 1.36 6.11 -2.76 -0.02 1.35 16 6 N -0.63 -7.45 2.23 -178.05 -0.40 -7.85 16 7 C 0.70 11.24 8.19 -86.92 -0.71 10.53 16 8 O -0.59 -11.99 15.66 5.29 0.08 -11.90 16 9 N -0.74 -11.38 5.39 -65.23 -0.35 -11.73 16 10 C 0.13 2.46 5.68 -4.04 -0.02 2.44 16 11 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 12 C 0.02 0.63 4.97 -27.88 -0.14 0.50 16 13 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 14 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -26.99 13.29 55.43 0.74 -26.26 16 17 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.12 1.06 4.39 -4.08 -0.02 1.05 16 22 C -0.11 -0.98 2.56 -92.47 -0.24 -1.21 16 23 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 24 C -0.15 -1.05 9.10 37.16 0.34 -0.71 16 25 C -0.10 -0.82 3.87 -29.79 -0.12 -0.93 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.40 8.10 -51.93 -0.42 -0.02 16 28 H 0.05 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.08 0.52 7.74 -51.93 -0.40 0.12 16 30 H 0.06 0.44 7.31 -51.93 -0.38 0.06 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.12 7.01 -51.93 -0.36 0.76 16 33 H 0.39 5.04 6.13 -40.82 -0.25 4.79 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.07 0.65 6.35 -51.93 -0.33 0.32 16 42 H 0.08 0.58 8.06 -51.93 -0.42 0.16 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.46 7.77 -51.93 -0.40 0.06 16 47 H 0.06 0.40 7.35 -51.93 -0.38 0.02 16 LS Contribution 363.68 15.07 5.48 5.48 Total: -1.00 -32.34 363.68 -9.75 -42.09 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -8.77 Total: -0.53 kcal Atomic # 6 Polarization: -4.34 SS G_CDS: -1.50 Total: -5.84 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.01 Total: -45.83 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.08 Total: -11.90 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.34 -9.75 -42.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179029129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.433 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds