Wall clock time and date at job start Tue Mar 31 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47058 * 2 1 4 4 C 1.52997 * 109.46878 * 239.99681 * 2 1 3 5 5 C 1.53003 * 109.46878 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47256 * 60.00350 * 5 4 2 7 7 H 1.08999 * 109.46802 * 59.99747 * 6 5 4 8 8 N 1.46493 * 109.47099 * 180.02562 * 6 5 4 9 9 C 1.34784 * 119.99864 * 274.99655 * 8 6 5 10 10 O 1.21588 * 119.99858 * 359.72927 * 9 8 6 11 11 N 1.34777 * 119.99964 * 179.73002 * 9 8 6 12 12 C 1.46496 * 119.99614 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.46851 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47298 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47210 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00318 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99926 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99816 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99923 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47049 * 89.99983 * 19 17 15 21 21 H 1.48496 * 109.46789 * 209.99372 * 19 17 15 22 22 H 1.48493 * 109.47414 * 329.99794 * 19 17 15 23 23 C 1.52996 * 109.46775 * 300.00015 * 6 5 4 24 24 C 1.52999 * 109.47075 * 119.99686 * 2 1 3 25 25 H 1.08994 * 109.47214 * 300.00329 * 24 2 1 26 26 C 1.53009 * 109.46905 * 59.99973 * 24 2 1 27 27 H 1.08998 * 109.46961 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46962 * 300.00400 * 1 2 3 29 29 H 1.09004 * 109.47269 * 59.99978 * 1 2 3 30 30 H 1.09000 * 109.46884 * 60.00635 * 4 2 1 31 31 H 1.08993 * 109.47536 * 300.00026 * 4 2 1 32 32 H 1.09005 * 109.47324 * 300.00019 * 5 4 2 33 33 H 1.09008 * 109.46891 * 180.02562 * 5 4 2 34 34 H 0.97000 * 120.00740 * 94.72347 * 8 6 5 35 35 H 0.96996 * 119.99887 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.47287 * 299.99298 * 12 11 9 37 37 H 1.09002 * 109.47320 * 59.99900 * 12 11 9 38 38 H 1.09001 * 109.47671 * 299.99654 * 13 12 11 39 39 H 1.09006 * 109.47297 * 59.99934 * 13 12 11 40 40 H 1.09001 * 109.46675 * 300.00507 * 14 13 12 41 41 H 1.08994 * 109.47046 * 60.00071 * 14 13 12 42 42 H 0.97005 * 119.99644 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.47300 * 180.02562 * 23 6 5 44 44 H 1.08999 * 109.47237 * 299.99466 * 23 6 5 45 45 H 1.09003 * 109.47012 * 60.00359 * 26 24 2 46 46 H 1.09004 * 109.47081 * 179.97438 * 26 24 2 47 47 H 1.08994 * 109.47076 * 299.99814 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7208 -1.2495 6 6 4.0806 -1.4416 -0.0003 7 1 3.7175 -2.4694 -0.0001 8 7 5.5455 -1.4405 -0.0003 9 6 6.2201 -2.3963 -0.6698 10 8 5.6127 -3.2621 -1.2696 11 7 7.5678 -2.3921 -0.6744 12 6 8.3010 -3.4306 -1.4025 13 6 9.8050 -3.1963 -1.2482 14 6 10.5708 -4.2813 -2.0082 15 6 12.0522 -4.0508 -1.8557 16 1 12.4117 -3.2145 -1.2745 17 6 12.9488 -4.9078 -2.4582 18 7 12.5111 -5.9264 -3.1654 19 14 14.7851 -4.6217 -2.2697 20 1 15.2786 -5.3464 -1.0711 21 1 15.4905 -5.1232 -3.4764 22 1 15.0462 -3.1685 -2.1118 23 6 3.5705 -0.7204 1.2489 24 6 2.0400 -0.7212 1.2493 25 1 1.6767 -0.2074 2.1392 26 6 1.5299 -2.1637 1.2493 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6767 -0.2074 -2.1392 31 1 1.6767 -1.7489 -1.2492 32 1 3.9330 0.3071 -1.2498 33 1 3.9333 -1.2343 -2.1398 34 1 6.0301 -0.7498 0.4781 35 1 8.0523 -1.7012 -0.1962 36 1 8.0421 -4.4093 -0.9985 37 1 8.0339 -3.3912 -2.4586 38 1 10.0637 -2.2177 -1.6526 39 1 10.0724 -3.2354 -0.1922 40 1 10.3120 -5.2597 -1.6035 41 1 10.3036 -4.2426 -3.0642 42 1 13.1419 -6.5295 -3.5890 43 1 3.9346 -1.2336 2.1389 44 1 3.9335 0.3074 1.2487 45 1 1.8934 -2.6776 0.3593 46 1 1.8936 -2.6777 2.1391 47 1 0.4400 -2.1637 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183316253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:35 Heat of formation + Delta-G solvation = -76.713150 kcal Electronic energy + Delta-G solvation = -22184.331801 eV Core-core repulsion = 18979.171154 eV Total energy + Delta-G solvation = -3205.160647 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.40596 -39.06457 -35.58407 -34.63581 -33.28537 -32.01769 -31.65313 -30.56345 -27.73240 -26.65324 -25.44243 -23.09412 -22.64914 -21.51052 -20.74636 -20.32373 -18.92869 -17.79772 -16.84295 -16.22803 -15.67453 -15.30291 -14.88216 -14.56769 -14.38360 -14.31198 -14.18956 -13.85811 -13.48770 -13.41146 -12.79226 -12.68174 -12.26317 -12.23792 -11.87373 -11.82439 -11.78079 -11.55392 -11.35237 -11.02393 -10.89239 -10.80565 -10.69181 -10.57891 -10.48013 -10.19250 -9.99858 -9.83477 -9.41301 -9.10755 -9.09578 -8.54808 -8.35770 -6.00388 -4.03375 2.87221 3.31563 3.37869 3.40734 3.43314 4.31725 4.34704 4.36656 4.45819 4.61009 4.77553 4.89436 5.04151 5.05348 5.14619 5.21455 5.30303 5.35272 5.35684 5.46095 5.54946 5.61871 5.66580 5.70696 5.72920 5.75738 5.84780 5.89608 5.96547 6.00054 6.04774 6.13545 6.21878 6.29456 6.57790 6.58822 6.65466 6.85661 7.05399 7.14599 7.65703 7.78840 7.98742 8.22238 8.39735 8.82663 9.03353 9.60577 11.10891 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.053731 B = 0.002278 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.992962 B =12288.631394 C =12377.545708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 H 0.069 0.931 4 C -0.113 4.113 5 C -0.131 4.131 6 C 0.163 3.837 7 H 0.091 0.909 8 N -0.749 5.749 9 C 0.700 3.300 10 O -0.593 6.593 11 N -0.743 5.743 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.893 5.893 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.122 4.122 24 C -0.080 4.080 25 H 0.072 0.928 26 C -0.158 4.158 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.392 0.608 35 H 0.393 0.607 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.053 0.947 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.179 14.231 9.625 28.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.170 4.170 6 C 0.058 3.942 7 H 0.108 0.892 8 N -0.404 5.404 9 C 0.400 3.600 10 O -0.471 6.471 11 N -0.397 5.397 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.160 4.160 24 C -0.099 4.099 25 H 0.090 0.910 26 C -0.215 4.215 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.225 0.775 35 H 0.226 0.774 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.660 13.234 8.941 28.546 hybrid contribution 1.600 0.780 0.483 1.844 sum -22.060 14.013 9.424 27.781 Atomic orbital electron populations 1.21891 0.95301 1.02042 1.01447 1.21181 0.95455 0.99330 0.94759 0.91271 1.21597 0.95034 1.01180 0.97315 1.21957 0.95468 1.00647 0.98882 1.20815 0.78243 1.00939 0.94200 0.89153 1.45242 1.06839 1.31302 1.57015 1.16049 0.82070 0.82012 0.79916 1.90908 1.67988 1.39320 1.48933 1.45398 1.04301 1.33093 1.56922 1.21489 0.92016 0.89524 0.95761 1.21888 0.91126 1.01608 1.01194 1.19029 0.94150 0.92888 0.95334 1.21206 0.91314 1.11688 1.31796 0.92668 1.25039 0.99026 0.95222 0.95260 1.69970 1.34464 1.15367 1.33451 0.86577 0.85373 0.78379 0.77551 1.20676 1.21218 1.19920 1.21853 0.95812 1.00770 0.97578 1.21063 0.94084 0.96793 0.97980 0.90965 1.22043 1.01085 0.95932 1.02397 0.92251 0.92858 0.92818 0.91899 0.91342 0.92102 0.91212 0.77455 0.77403 0.92023 0.92038 0.92806 0.92808 0.96254 0.96242 0.92940 0.91274 0.91523 0.91715 0.92743 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.84 37.16 0.33 -0.55 16 2 C -0.09 -0.59 2.49 -90.62 -0.23 -0.82 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.11 -0.92 4.93 -26.73 -0.13 -1.05 16 5 C -0.13 -1.29 5.49 -26.73 -0.15 -1.44 16 6 C 0.16 1.66 2.18 -67.94 -0.15 1.51 16 7 H 0.09 1.13 5.86 -51.93 -0.30 0.83 16 8 N -0.75 -8.34 5.08 -58.68 -0.30 -8.63 16 9 C 0.70 10.92 8.53 -86.91 -0.74 10.18 16 10 O -0.59 -11.81 16.00 5.29 0.08 -11.73 16 11 N -0.74 -11.05 5.56 -65.23 -0.36 -11.41 16 12 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 13 C -0.12 -2.38 5.27 -26.73 -0.14 -2.53 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 19 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.12 -0.90 4.92 -26.71 -0.13 -1.03 16 24 C -0.08 -0.54 2.72 -90.59 -0.25 -0.78 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 C -0.16 -1.14 8.15 37.16 0.30 -0.83 16 27 H 0.06 0.35 6.43 -51.93 -0.33 0.02 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.39 3.24 8.62 -40.82 -0.35 2.88 16 35 H 0.39 4.65 8.49 -40.82 -0.35 4.31 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.55 4.81 -51.93 -0.25 0.30 16 46 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -32.64 362.92 -9.81 -42.44 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.56 Total: 1.44 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.85 Total: -7.90 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.08 Total: -46.31 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.64 -9.81 -42.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183316253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.269 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds