Wall clock time and date at job start Tue Mar 31 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.03886 * 2 1 4 4 C 1.53825 * 109.04747 * 241.02897 * 2 1 3 5 5 C 1.54167 * 111.96689 * 198.56579 * 4 2 1 6 6 C 1.50757 * 112.61102 * 318.48562 * 5 4 2 7 7 C 1.54432 * 109.02559 * 93.01847 * 6 5 4 8 8 N 1.39775 * 111.77083 * 282.58942 * 7 6 5 9 9 C 1.46898 * 111.00148 * 189.12644 * 8 7 6 10 10 C 1.53001 * 109.47045 * 66.04756 * 9 8 7 11 11 C 1.50698 * 109.47377 * 179.97438 * 10 9 8 12 12 O 1.21285 * 119.99686 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00318 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00005 * 0.02562 * 13 11 10 15 15 C 1.46499 * 120.00337 * 180.02562 * 13 11 10 16 16 C 1.50701 * 109.46992 * 269.99986 * 15 13 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 13 19 19 N 1.31512 * 119.99594 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47061 * 90.00257 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99430 * 20 18 16 23 23 H 1.48498 * 109.47403 * 329.99876 * 20 18 16 24 24 C 1.47630 * 114.75434 * 62.27578 * 8 7 6 25 25 H 1.08990 * 109.47344 * 178.97420 * 1 2 3 26 26 H 1.09004 * 109.46587 * 298.97390 * 1 2 3 27 27 H 1.09004 * 109.46656 * 58.96876 * 1 2 3 28 28 H 1.08999 * 108.98258 * 77.92429 * 4 2 1 29 29 H 1.09004 * 108.91219 * 319.15548 * 4 2 1 30 30 H 1.09003 * 108.85348 * 197.68209 * 5 4 2 31 31 H 1.08999 * 108.77441 * 79.23647 * 5 4 2 32 32 H 1.09004 * 109.54407 * 333.15789 * 6 5 4 33 33 H 1.09003 * 109.54542 * 212.88272 * 6 5 4 34 34 H 1.09002 * 109.02053 * 162.00359 * 7 6 5 35 35 H 1.08994 * 108.96019 * 43.14277 * 7 6 5 36 36 H 1.08997 * 109.47492 * 306.05303 * 9 8 7 37 37 H 1.08998 * 109.47157 * 186.04425 * 9 8 7 38 38 H 1.09006 * 109.47070 * 59.99726 * 10 9 8 39 39 H 1.09003 * 109.47478 * 300.00192 * 10 9 8 40 40 H 1.08996 * 109.47461 * 270.00146 * 14 13 11 41 41 H 1.08998 * 109.46888 * 29.99915 * 14 13 11 42 42 H 1.08994 * 109.47490 * 149.99977 * 14 13 11 43 43 H 1.09002 * 109.47391 * 149.99977 * 15 13 11 44 44 H 1.09001 * 109.46813 * 30.00033 * 15 13 11 45 45 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 46 46 H 1.08997 * 109.74842 * 36.84115 * 24 8 7 47 47 H 1.09008 * 109.74361 * 157.55827 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8856 1.0304 0.0000 4 6 2.0321 -0.7043 -1.2721 5 6 3.5014 -1.1523 -1.1415 6 6 4.3653 -0.1171 -0.4673 7 6 4.4177 -0.4141 1.0473 8 7 3.2494 -0.0052 1.6965 9 6 3.3989 -0.0941 3.1551 10 6 4.4479 0.9168 3.6228 11 6 4.6009 0.8261 5.1192 12 8 3.9367 0.0308 5.7496 13 7 5.4765 1.6280 5.7570 14 6 6.2793 2.5882 4.9955 15 6 5.6257 1.5394 7.2116 16 6 4.6606 2.4885 7.8742 17 1 4.0018 3.0965 7.2720 18 6 4.6181 2.5799 9.2493 19 7 3.7756 3.4077 9.8275 20 14 5.7572 1.5278 10.2909 21 1 7.0269 2.2600 10.5298 22 1 5.1051 1.2307 11.5916 23 1 6.0452 0.2564 9.5797 24 6 2.0209 -0.6902 1.2479 25 1 -0.3633 -1.0274 -0.0184 26 1 -0.3633 0.4978 0.8991 27 1 -0.3633 0.5298 -0.8806 28 1 1.9440 -0.0189 -2.1150 29 1 1.4100 -1.5794 -1.4603 30 1 3.8994 -1.3491 -2.1370 31 1 3.5369 -2.0736 -0.5600 32 1 3.9413 0.8738 -0.6301 33 1 5.3727 -0.1567 -0.8818 34 1 5.2682 0.1104 1.4829 35 1 4.5489 -1.4861 1.1936 36 1 3.7176 -1.1003 3.4271 37 1 2.4440 0.1261 3.6324 38 1 4.1293 1.9231 3.3508 39 1 5.4028 0.6967 3.1455 40 1 7.2133 2.1180 4.6881 41 1 5.7247 2.9059 4.1125 42 1 6.4970 3.4552 5.6191 43 1 6.6456 1.8058 7.4892 44 1 5.4148 0.5207 7.5371 45 1 3.7459 3.4723 10.7949 46 1 2.2409 -1.7349 1.0286 47 1 1.2600 -0.6289 2.0261 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185261644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:15 Heat of formation + Delta-G solvation = -41.183237 kcal Electronic energy + Delta-G solvation = -22958.212107 eV Core-core repulsion = 19754.592153 eV Total energy + Delta-G solvation = -3203.619954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.94113 -38.87030 -35.58204 -34.83835 -33.40171 -32.55360 -30.89955 -28.45797 -27.97862 -26.05858 -25.53597 -24.60025 -22.77753 -21.58645 -20.61469 -19.26986 -18.32864 -16.94910 -16.79255 -15.79220 -15.67013 -15.47020 -15.12374 -15.01195 -14.60523 -13.96480 -13.79122 -13.33258 -13.22908 -13.03738 -12.79572 -12.65273 -12.30367 -12.23271 -12.06640 -11.91324 -11.78726 -11.58761 -11.40997 -11.15847 -10.97002 -10.91194 -10.75427 -10.53619 -10.49005 -10.43340 -10.34318 -10.08704 -9.52588 -8.96817 -8.57819 -8.21710 -7.67338 -6.07141 -4.05669 3.27875 3.35970 3.38743 3.40852 3.65090 4.10791 4.41237 4.53642 4.61675 4.73067 4.85196 4.94385 5.09580 5.16874 5.20469 5.25899 5.33201 5.35568 5.42475 5.49995 5.52899 5.57415 5.64376 5.65131 5.73179 5.77598 5.84891 5.86809 5.92291 5.95274 6.00570 6.10482 6.11847 6.15118 6.20781 6.24174 6.34982 6.68750 6.99722 7.10627 7.36668 7.41980 7.63178 8.28211 8.49151 8.95141 9.02166 9.53316 11.06355 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030510 B = 0.003253 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.512738 B = 8604.712416 C = 9008.485515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.084 0.916 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.118 4.118 7 C 0.069 3.931 8 N -0.556 5.556 9 C 0.078 3.922 10 C -0.135 4.135 11 C 0.507 3.493 12 O -0.545 6.545 13 N -0.599 5.599 14 C 0.083 3.917 15 C 0.215 3.785 16 C -0.528 4.528 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.875 3.125 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.264 1.264 24 C 0.071 3.929 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.017 0.983 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.044 0.956 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.024 0.976 44 H 0.040 0.960 45 H 0.264 0.736 46 H 0.040 0.960 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.924 -6.815 -23.204 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.102 0.898 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.156 4.156 7 C -0.060 4.060 8 N -0.280 5.280 9 C -0.049 4.049 10 C -0.176 4.176 11 C 0.294 3.706 12 O -0.423 6.423 13 N -0.331 5.331 14 C -0.061 4.061 15 C 0.094 3.906 16 C -0.567 4.567 17 H 0.092 0.908 18 C -0.131 4.131 19 N -0.537 5.537 20 Si 0.702 3.298 21 H -0.201 1.201 22 H -0.209 1.209 23 H -0.189 1.189 24 C -0.056 4.056 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.035 0.965 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.094 0.906 43 H 0.042 0.958 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.478 -6.726 -22.797 23.773 hybrid contribution 0.724 -1.102 0.846 1.566 sum 1.202 -7.828 -21.952 23.337 Atomic orbital electron populations 1.21909 0.95266 1.01491 1.01842 1.21017 0.95023 1.01206 0.93730 0.89773 1.21981 0.95505 0.99925 0.97517 1.21427 0.95151 0.98962 1.00342 1.21486 0.99454 1.00187 0.94430 1.21044 0.92882 0.97619 0.94494 1.58764 1.03362 1.60445 1.05437 1.21798 1.00028 0.97617 0.85487 1.21686 1.00432 1.02109 0.93355 1.20352 0.79927 0.81103 0.89250 1.90662 1.44852 1.38228 1.68520 1.47842 1.39484 1.36571 1.09223 1.21664 0.94458 0.93461 0.96489 1.19654 0.96595 0.98666 0.75665 1.21346 1.20711 1.22597 0.92006 0.90766 1.24867 0.95441 0.95063 0.97714 1.69900 1.36618 1.36922 1.10220 0.86851 0.81034 0.81607 0.80281 1.20112 1.20948 1.18863 1.21889 0.91320 0.95442 0.96958 0.93007 0.92340 0.92848 0.92358 0.92495 0.92513 0.92554 0.90640 0.91709 0.90829 0.96485 0.94136 0.89821 0.88506 0.89741 0.93779 0.91951 0.90649 0.95759 0.94172 0.92582 0.94184 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 8.84 37.16 0.33 -0.88 16 2 C -0.09 -0.82 2.28 -91.28 -0.21 -1.03 16 3 H 0.08 0.86 7.26 -51.93 -0.38 0.48 16 4 C -0.11 -0.89 5.30 -25.69 -0.14 -1.02 16 5 C -0.12 -0.98 5.32 -27.25 -0.14 -1.12 16 6 C -0.12 -1.01 5.65 -27.10 -0.15 -1.16 16 7 C 0.07 0.72 4.82 -6.75 -0.03 0.68 16 8 N -0.56 -6.48 3.95 -240.01 -0.95 -7.43 16 9 C 0.08 1.11 4.24 -3.82 -0.02 1.09 16 10 C -0.14 -1.98 4.15 -27.88 -0.12 -2.10 16 11 C 0.51 10.38 7.67 -10.99 -0.08 10.30 16 12 O -0.54 -13.49 15.56 5.55 0.09 -13.41 16 13 N -0.60 -12.50 2.86 -182.96 -0.52 -13.02 16 14 C 0.08 1.28 10.24 59.85 0.61 1.90 16 15 C 0.21 5.35 4.23 -5.19 -0.02 5.33 16 16 C -0.53 -15.41 9.94 -34.44 -0.34 -15.75 16 17 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -28.00 13.96 55.43 0.77 -27.22 16 20 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 24 C 0.07 0.75 4.89 -4.52 -0.02 0.73 16 25 H 0.05 0.40 8.11 -51.93 -0.42 -0.02 16 26 H 0.06 0.51 8.05 -51.93 -0.42 0.09 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.43 7.95 -51.93 -0.41 0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 32 H 0.07 0.69 7.11 -51.93 -0.37 0.32 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.75 5.89 -51.93 -0.31 0.44 16 35 H 0.02 0.19 7.54 -51.93 -0.39 -0.20 16 36 H 0.04 0.62 8.06 -51.93 -0.42 0.20 16 37 H 0.08 1.32 7.62 -51.93 -0.40 0.92 16 38 H 0.10 1.34 7.40 -51.93 -0.38 0.96 16 39 H 0.08 1.04 6.31 -51.93 -0.33 0.72 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 42 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 43 H 0.02 0.57 7.50 -51.93 -0.39 0.18 16 44 H 0.04 1.08 6.48 -51.93 -0.34 0.74 16 45 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.04 0.42 6.66 -51.93 -0.35 0.08 16 47 H 0.08 0.84 7.04 -51.92 -0.37 0.47 16 LS Contribution 354.73 15.07 5.35 5.35 Total: -1.00 -33.40 354.73 -8.83 -42.23 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -8.46 Total: -2.56 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -0.43 Total: -1.04 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.70 Total: -47.67 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.40 -8.83 -42.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185261644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.047 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds