Wall clock time and date at job start Tue Mar 31 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 108.81683 * 2 1 4 4 C 1.45884 * 108.75838 * 118.43334 * 2 1 3 5 5 C 1.54520 * 111.67234 * 182.25941 * 4 2 1 6 6 C 1.50531 * 108.86317 * 282.74808 * 5 4 2 7 7 C 1.53921 * 112.93435 * 91.75306 * 6 5 4 8 8 N 1.47980 * 113.36042 * 317.73866 * 7 6 5 9 9 C 1.46906 * 111.06001 * 192.21161 * 8 7 6 10 10 C 1.52999 * 109.46727 * 297.43227 * 9 8 7 11 11 C 1.50700 * 109.47173 * 179.97438 * 10 9 8 12 12 O 1.21290 * 119.99769 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00613 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99472 * 0.02562 * 13 11 10 15 15 C 1.46499 * 120.00437 * 180.02562 * 13 11 10 16 16 C 1.50693 * 109.46773 * 90.00646 * 15 13 11 17 17 H 1.08006 * 120.00472 * 359.97438 * 16 15 13 18 18 C 1.37881 * 120.00036 * 179.97438 * 16 15 13 19 19 N 1.31515 * 119.99636 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00221 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46875 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47164 * 120.00227 * 20 18 16 23 23 H 1.48505 * 109.46976 * 239.99997 * 20 18 16 24 24 C 1.44307 * 113.62884 * 318.19615 * 8 7 6 25 25 H 1.08998 * 109.46981 * 178.48316 * 1 2 3 26 26 H 1.09003 * 109.46954 * 298.48460 * 1 2 3 27 27 H 1.08998 * 109.46636 * 58.48435 * 1 2 3 28 28 H 1.09004 * 109.03836 * 302.82269 * 4 2 1 29 29 H 1.09000 * 109.04178 * 61.76798 * 4 2 1 30 30 H 1.09003 * 109.57169 * 42.56664 * 5 4 2 31 31 H 1.09001 * 109.56787 * 162.80808 * 5 4 2 32 32 H 1.08995 * 108.79299 * 212.64751 * 6 5 4 33 33 H 1.09000 * 108.78853 * 330.98393 * 6 5 4 34 34 H 1.09003 * 108.70799 * 78.75261 * 7 6 5 35 35 H 1.08995 * 108.71010 * 196.88783 * 7 6 5 36 36 H 1.08992 * 109.47227 * 57.43492 * 9 8 7 37 37 H 1.09002 * 109.46772 * 177.43440 * 9 8 7 38 38 H 1.08997 * 109.47668 * 300.00556 * 10 9 8 39 39 H 1.09002 * 109.47321 * 60.00548 * 10 9 8 40 40 H 1.09001 * 109.47446 * 89.99521 * 14 13 11 41 41 H 1.08995 * 109.46767 * 209.99612 * 14 13 11 42 42 H 1.09000 * 109.46883 * 329.99683 * 14 13 11 43 43 H 1.09000 * 109.47336 * 210.00522 * 15 13 11 44 44 H 1.09001 * 109.47142 * 330.00706 * 15 13 11 45 45 H 0.97000 * 119.99561 * 180.02562 * 19 18 16 46 46 H 1.09002 * 109.69591 * 335.62041 * 24 8 7 47 47 H 1.08996 * 109.69408 * 215.07351 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8816 1.0317 0.0000 4 6 1.9992 -0.6577 1.2147 5 6 3.5413 -0.6455 1.3111 6 6 4.0948 -1.7006 0.3911 7 6 4.4138 -1.1626 -1.0153 8 7 3.3750 -0.2513 -1.5446 9 6 3.5749 0.0015 -2.9778 10 6 4.9190 0.7011 -3.1896 11 6 5.1245 0.9599 -4.6599 12 8 4.2788 0.6188 -5.4597 13 7 6.2474 1.5714 -5.0862 14 6 7.2685 1.9839 -4.1201 15 6 6.4468 1.8234 -6.5155 16 6 5.8785 3.1729 -6.8716 17 1 5.4146 3.7817 -6.1096 18 6 5.9505 3.6304 -8.1703 19 7 6.5149 2.8888 -9.0982 20 14 5.2454 5.3028 -8.6119 21 1 4.6683 5.9330 -7.3974 22 1 6.3242 6.1675 -9.1539 23 1 4.1825 5.1372 -9.6357 24 6 2.0274 -0.6951 -1.2808 25 1 -0.3633 -1.0273 -0.0272 26 1 -0.3633 0.4901 0.9033 27 1 -0.3632 0.5372 -0.8761 28 1 1.5847 -0.1421 2.0810 29 1 1.6520 -1.6909 1.2164 30 1 3.9181 0.3330 1.0131 31 1 3.8447 -0.8568 2.3365 32 1 5.0082 -2.1037 0.8283 33 1 3.3650 -2.5051 0.3002 34 1 5.3626 -0.6273 -0.9780 35 1 4.5159 -2.0065 -1.6976 36 1 3.5690 -0.9451 -3.5180 37 1 2.7716 0.6373 -3.3501 38 1 4.9250 1.6478 -2.6493 39 1 5.7223 0.0653 -2.8173 40 1 7.9824 1.1728 -3.9772 41 1 7.7895 2.8645 -4.4959 42 1 6.7933 2.2215 -3.1683 43 1 7.5129 1.8069 -6.7420 44 1 5.9403 1.0514 -7.0947 45 1 6.5660 3.2108 -10.0118 46 1 2.0175 -1.7759 -1.1398 47 1 1.3823 -0.4280 -2.1178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185261661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:18 Heat of formation + Delta-G solvation = -48.934620 kcal Electronic energy + Delta-G solvation = -22949.952317 eV Core-core repulsion = 19745.996238 eV Total energy + Delta-G solvation = -3203.956079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.70286 -38.76835 -35.57282 -34.71698 -33.45989 -32.61407 -30.77857 -28.14509 -27.69782 -25.93579 -25.30982 -24.63673 -22.98265 -21.64737 -20.21768 -19.68437 -18.26089 -16.62889 -16.49417 -16.19121 -15.47684 -15.31579 -14.98738 -14.67056 -14.44425 -14.14219 -13.61477 -13.51258 -13.37549 -12.87213 -12.76695 -12.38567 -12.23223 -12.16229 -11.99495 -11.82758 -11.65842 -11.43128 -11.20538 -11.06398 -10.91075 -10.85005 -10.68803 -10.60672 -10.54764 -10.48343 -10.37985 -10.13510 -9.58277 -8.84513 -8.42079 -8.18564 -7.60176 -6.02530 -4.07057 3.31082 3.38234 3.41932 3.50303 3.69190 4.17243 4.47261 4.51363 4.69942 4.73345 4.90414 4.95083 5.16407 5.20350 5.24934 5.30957 5.35903 5.39335 5.50756 5.53395 5.58433 5.59623 5.63913 5.68285 5.74362 5.83431 5.86653 5.93085 5.96785 5.97521 6.08654 6.16150 6.18965 6.22153 6.24625 6.26943 6.37444 7.07473 7.11451 7.26533 7.47036 7.58059 7.94395 8.26093 8.46483 8.93158 9.14253 9.58137 11.05611 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025545 B = 0.003333 C = 0.003130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.843535 B = 8399.974999 C = 8944.916179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 H 0.078 0.922 4 C -0.109 4.109 5 C -0.112 4.112 6 C -0.119 4.119 7 C 0.059 3.941 8 N -0.550 5.550 9 C 0.078 3.922 10 C -0.135 4.135 11 C 0.504 3.496 12 O -0.546 6.546 13 N -0.604 5.604 14 C 0.084 3.916 15 C 0.244 3.756 16 C -0.525 4.525 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.896 5.896 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C 0.070 3.930 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.031 0.969 44 H 0.043 0.957 45 H 0.262 0.738 46 H 0.040 0.960 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 -7.869 21.770 23.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 H 0.097 0.903 4 C -0.146 4.146 5 C -0.150 4.150 6 C -0.156 4.156 7 C -0.068 4.068 8 N -0.274 5.274 9 C -0.049 4.049 10 C -0.176 4.176 11 C 0.290 3.710 12 O -0.425 6.425 13 N -0.336 5.336 14 C -0.060 4.060 15 C 0.125 3.875 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.535 5.535 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.059 4.059 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.209 -7.639 21.368 23.283 hybrid contribution -0.285 0.225 -0.751 0.834 sum -5.494 -7.414 20.617 22.588 Atomic orbital electron populations 1.21925 0.95666 1.01456 1.01700 1.20077 0.94697 1.01364 0.94581 0.90315 1.20616 0.95788 1.00478 0.97716 1.21288 0.95256 1.00270 0.98186 1.21384 1.01046 0.98451 0.94765 1.22443 0.95344 0.94240 0.94813 1.60648 1.02737 1.48248 1.15807 1.21873 0.97548 0.99692 0.85821 1.21657 0.98490 1.02594 0.94813 1.20346 0.82106 0.78511 0.90036 1.90662 1.42606 1.52503 1.56706 1.48160 1.18238 1.57135 1.10055 1.21629 0.91762 1.00071 0.92543 1.19277 0.96964 0.97132 0.74123 1.21488 1.38154 1.02261 0.94439 0.92399 1.24951 0.95317 0.97787 0.96166 1.69947 1.44275 1.37266 1.02001 0.86438 0.78794 0.83684 0.78485 1.19774 1.20970 1.20879 1.21809 0.89240 0.97366 0.97477 0.93081 0.92837 0.92602 0.92481 0.92818 0.90696 0.92559 0.91698 0.92549 0.90854 0.95020 0.94207 0.89874 0.88762 0.89938 0.93900 0.90871 0.92301 0.95093 0.93919 0.92802 0.94157 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 8.96 37.16 0.33 -0.91 16 2 C -0.09 -0.82 2.34 -93.47 -0.22 -1.04 16 3 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 4 C -0.11 -0.89 4.52 -29.30 -0.13 -1.03 16 5 C -0.11 -0.93 5.63 -27.17 -0.15 -1.09 16 6 C -0.12 -1.01 5.28 -27.48 -0.15 -1.15 16 7 C 0.06 0.61 4.79 -2.75 -0.01 0.59 16 8 N -0.55 -6.47 4.02 -234.60 -0.94 -7.41 16 9 C 0.08 1.13 4.09 -3.82 -0.02 1.12 16 10 C -0.13 -2.03 4.09 -27.88 -0.11 -2.14 16 11 C 0.50 10.60 7.67 -10.99 -0.08 10.51 16 12 O -0.55 -13.91 15.56 5.55 0.09 -13.83 16 13 N -0.60 -13.05 2.86 -182.96 -0.52 -13.58 16 14 C 0.08 1.35 10.24 59.85 0.61 1.96 16 15 C 0.24 6.53 5.16 -5.20 -0.03 6.50 16 16 C -0.52 -15.15 9.39 -34.44 -0.32 -15.48 16 17 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 18 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 19 N -0.90 -26.98 13.29 55.43 0.74 -26.25 16 20 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.07 0.75 4.79 -4.70 -0.02 0.72 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.40 8.11 -51.93 -0.42 -0.02 16 27 H 0.05 0.48 8.12 -51.93 -0.42 0.06 16 28 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.05 0.43 7.58 -51.93 -0.39 0.04 16 30 H 0.07 0.71 7.79 -51.93 -0.40 0.31 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.48 6.65 -51.93 -0.35 0.14 16 34 H 0.07 0.73 6.97 -51.93 -0.36 0.37 16 35 H 0.03 0.35 7.95 -51.93 -0.41 -0.07 16 36 H 0.04 0.62 8.00 -51.93 -0.42 0.21 16 37 H 0.08 1.33 7.75 -51.93 -0.40 0.92 16 38 H 0.09 1.33 7.40 -51.93 -0.38 0.94 16 39 H 0.08 1.07 6.68 -51.93 -0.35 0.72 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 42 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 43 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 44 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 46 H 0.04 0.42 6.79 -51.93 -0.35 0.07 16 47 H 0.07 0.79 7.20 -51.93 -0.37 0.41 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -32.56 360.85 -9.30 -41.85 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -8.67 Total: -3.56 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -0.40 Total: 0.21 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.73 Total: -47.23 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.56 -9.30 -41.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185261661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.081 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds