Wall clock time and date at job start Tue Mar 31 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47078 * 2 1 4 4 C 1.50707 * 109.46750 * 119.99705 * 2 1 3 5 5 O 1.21286 * 119.99309 * 104.65710 * 4 2 1 6 6 N 1.34771 * 119.99982 * 284.38540 * 4 2 1 7 7 C 1.46493 * 120.00123 * 0.27288 * 6 4 2 8 8 C 1.46502 * 119.99481 * 180.27630 * 6 4 2 9 9 C 1.50703 * 109.47268 * 90.00499 * 8 6 4 10 10 H 1.07998 * 119.99802 * 359.97438 * 9 8 6 11 11 C 1.37872 * 120.00070 * 180.02562 * 9 8 6 12 12 N 1.31524 * 120.00104 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00076 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46864 * 89.99394 * 13 11 9 15 15 H 1.48503 * 109.47077 * 209.99594 * 13 11 9 16 16 H 1.48497 * 109.46948 * 329.99561 * 13 11 9 17 17 N 1.46892 * 109.47249 * 239.99582 * 2 1 3 18 18 C 1.47637 * 111.00134 * 81.55635 * 17 2 1 19 19 C 1.50818 * 108.05416 * 150.34278 * 18 17 2 20 20 C 1.53824 * 111.61739 * 95.06393 * 19 18 17 21 21 C 1.54178 * 111.96977 * 319.03837 * 20 19 18 22 22 C 1.50754 * 112.60990 * 318.49554 * 21 20 19 23 23 H 1.09000 * 109.54180 * 333.14504 * 22 21 20 24 24 C 1.53000 * 109.61478 * 212.92602 * 22 21 20 25 25 C 1.39785 * 111.00277 * 312.66650 * 17 2 1 26 26 H 1.09000 * 109.47335 * 300.00178 * 1 2 3 27 27 H 1.09000 * 109.46671 * 59.99886 * 1 2 3 28 28 H 1.08997 * 109.47078 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47242 * 90.00633 * 7 6 4 30 30 H 1.09000 * 109.47468 * 209.99981 * 7 6 4 31 31 H 1.08993 * 109.47303 * 330.00159 * 7 6 4 32 32 H 1.09007 * 109.46541 * 209.99795 * 8 6 4 33 33 H 1.08998 * 109.47498 * 329.99418 * 8 6 4 34 34 H 0.96993 * 119.99917 * 180.02562 * 12 11 9 35 35 H 1.08991 * 109.74774 * 269.99210 * 18 17 2 36 36 H 1.09011 * 109.74027 * 30.70877 * 18 17 2 37 37 H 1.08997 * 109.05071 * 334.51067 * 19 18 17 38 38 H 1.08996 * 108.99414 * 215.56790 * 19 18 17 39 39 H 1.08996 * 108.97995 * 198.40378 * 20 19 18 40 40 H 1.09003 * 108.98490 * 79.68329 * 20 19 18 41 41 H 1.08999 * 108.85268 * 197.68539 * 21 20 19 42 42 H 1.09005 * 108.85090 * 79.30008 * 21 20 19 43 43 H 1.08996 * 109.47224 * 300.40257 * 24 22 21 44 44 H 1.09000 * 109.47407 * 60.40788 * 24 22 21 45 45 H 1.09003 * 109.46550 * 180.40739 * 24 22 21 46 46 H 1.09000 * 109.02078 * 309.71519 * 25 17 2 47 47 H 1.09004 * 109.01520 * 68.61484 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.4849 -1.8320 1.1408 6 7 1.9835 -0.0972 2.4297 7 6 1.4367 1.2575 2.5380 8 6 2.4773 -0.7856 3.6250 9 6 3.9414 -0.4810 3.8112 10 1 4.4530 0.1608 3.1092 11 6 4.6281 -1.0224 4.8771 12 7 4.0052 -1.8044 5.7317 13 14 6.4431 -0.6455 5.1076 14 1 6.5934 0.5696 5.9479 15 1 7.1064 -1.7942 5.7751 16 1 7.0722 -0.4121 3.7828 17 7 2.0197 -0.6925 -1.1993 18 6 2.0053 0.2049 -2.3715 19 6 3.1120 -0.2238 -3.3021 20 6 2.5963 -1.1744 -4.3959 21 6 1.5878 -2.1999 -3.8404 22 6 2.0023 -2.7531 -2.5007 23 1 3.0874 -2.7087 -2.4077 24 6 1.5372 -4.2056 -2.3787 25 6 1.3529 -1.9071 -1.3838 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.3645 1.2026 2.7267 30 1 1.9239 1.7814 3.3604 31 1 1.6147 1.7966 1.6076 32 1 1.9211 -0.4428 4.4975 33 1 2.3419 -1.8607 3.5072 34 1 4.4882 -2.1850 6.4818 35 1 1.0451 0.1291 -2.8816 36 1 2.1720 1.2331 -2.0501 37 1 3.8852 -0.7312 -2.7253 38 1 3.5420 0.6602 -3.7729 39 1 3.4420 -1.7081 -4.8294 40 1 2.1117 -0.5875 -5.1762 41 1 1.4965 -3.0233 -4.5487 42 1 0.6158 -1.7175 -3.7369 43 1 0.4524 -4.2491 -2.4750 44 1 1.9962 -4.8016 -3.1674 45 1 1.8317 -4.6009 -1.4065 46 1 1.3772 -2.4710 -0.4513 47 1 0.3152 -1.7058 -1.6500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187912278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:23 Heat of formation + Delta-G solvation = -33.388190 kcal Electronic energy + Delta-G solvation = -24018.518331 eV Core-core repulsion = 20815.236395 eV Total energy + Delta-G solvation = -3203.281936 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.28712 -38.33193 -35.24245 -34.69050 -33.24037 -32.58393 -30.40450 -27.84878 -27.52656 -26.01080 -25.45846 -24.63913 -23.45750 -21.76902 -20.15681 -19.27125 -18.26601 -16.60833 -16.33246 -15.98891 -15.27453 -15.02793 -14.74182 -14.64901 -14.38382 -14.06515 -13.73371 -13.17550 -13.09456 -12.71949 -12.53071 -12.50728 -12.22384 -12.15193 -11.96541 -11.63745 -11.50204 -11.30080 -11.18735 -11.13653 -10.94865 -10.80954 -10.69373 -10.51636 -10.45355 -10.18502 -10.09092 -10.07022 -9.55924 -8.71971 -8.39245 -7.84026 -7.54627 -5.99939 -4.04139 3.33169 3.39725 3.43344 3.50974 3.79012 4.28304 4.49956 4.77245 4.81861 4.95920 5.04982 5.13485 5.19997 5.23940 5.25107 5.34658 5.38804 5.53678 5.58555 5.62749 5.69963 5.71941 5.77281 5.79378 5.83544 5.92599 5.96564 5.98451 6.07155 6.11910 6.15010 6.18482 6.27739 6.34411 6.41731 6.55696 6.61562 7.06638 7.33435 7.50027 7.61579 7.70284 7.97288 8.28764 8.50201 8.96521 9.20910 9.61034 11.08129 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.004539 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.696319 B = 6166.650642 C = 6467.394839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.068 3.932 3 H 0.098 0.902 4 C 0.512 3.488 5 O -0.525 6.525 6 N -0.604 5.604 7 C 0.083 3.917 8 C 0.247 3.753 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.274 1.274 17 N -0.529 5.529 18 C 0.067 3.933 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.115 4.115 22 C -0.088 4.088 23 H 0.081 0.919 24 C -0.142 4.142 25 C 0.072 3.928 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.030 0.970 33 H 0.043 0.957 34 H 0.262 0.738 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.098 0.902 47 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.235 4.643 -17.352 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.044 4.044 3 H 0.116 0.884 4 C 0.298 3.702 5 O -0.401 6.401 6 N -0.337 5.337 7 C -0.061 4.061 8 C 0.128 3.872 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.252 5.252 18 C -0.060 4.060 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.153 4.153 22 C -0.107 4.107 23 H 0.100 0.900 24 C -0.200 4.200 25 C -0.057 4.057 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -7.508 3.800 -17.156 19.108 hybrid contribution 0.197 0.554 0.109 0.598 sum -7.311 4.353 -17.046 19.052 Atomic orbital electron populations 1.22368 0.95801 1.03058 1.02499 1.21705 0.93840 0.98372 0.90458 0.88449 1.20119 0.79422 0.86819 0.83859 1.90610 1.45237 1.19283 1.84929 1.48130 1.60837 1.15541 1.09148 1.21672 0.97586 0.84772 1.02075 1.19255 0.94015 0.93726 0.80225 1.21443 0.94888 1.29838 1.09999 0.92478 1.24929 0.98471 0.94930 0.95783 1.69936 1.36527 1.32430 1.14675 0.86508 0.85032 0.77737 0.78225 1.20707 1.21126 1.19869 1.58540 1.59689 1.04538 1.02474 1.21836 0.97923 0.95535 0.90705 1.21421 0.99013 0.98907 0.96439 1.21896 0.98742 0.97010 0.97631 1.21520 0.98713 0.98065 0.96959 1.20975 1.01788 0.94296 0.93636 0.90047 1.21805 1.00598 0.95597 1.02016 1.21251 0.93220 0.90454 1.00754 0.91283 0.92265 0.91655 0.93859 0.90847 0.92574 0.95175 0.93921 0.92795 0.94256 0.91287 0.90214 0.92240 0.92407 0.92810 0.92530 0.92826 0.93249 0.92976 0.92077 0.88424 0.96996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 8.20 37.16 0.30 -1.95 16 2 C 0.07 1.05 1.90 -68.87 -0.13 0.92 16 3 H 0.10 1.36 5.90 -51.93 -0.31 1.06 16 4 C 0.51 10.75 6.79 -10.98 -0.07 10.68 16 5 O -0.52 -13.24 13.88 5.55 0.08 -13.16 16 6 N -0.60 -12.89 2.86 -182.95 -0.52 -13.41 16 7 C 0.08 1.32 9.32 59.84 0.56 1.88 16 8 C 0.25 6.54 5.16 -5.19 -0.03 6.51 16 9 C -0.52 -15.05 9.39 -34.44 -0.32 -15.37 16 10 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 12 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 13 Si 0.90 22.21 29.54 -169.99 -5.02 17.18 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 16 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 17 N -0.53 -8.01 3.65 -233.38 -0.85 -8.86 16 18 C 0.07 0.79 5.04 -4.51 -0.02 0.77 16 19 C -0.12 -1.35 5.41 -27.40 -0.15 -1.50 16 20 C -0.12 -1.16 5.91 -25.69 -0.15 -1.31 16 21 C -0.12 -1.24 4.88 -27.24 -0.13 -1.38 16 22 C -0.09 -1.16 2.44 -91.00 -0.22 -1.38 16 23 H 0.08 1.22 7.11 -51.93 -0.37 0.85 16 24 C -0.14 -1.73 8.90 37.16 0.33 -1.40 16 25 C 0.07 1.08 3.00 -6.74 -0.02 1.06 16 26 H 0.07 0.82 6.38 -51.93 -0.33 0.49 16 27 H 0.06 0.63 7.95 -51.93 -0.41 0.22 16 28 H 0.06 0.90 6.55 -51.93 -0.34 0.56 16 29 H 0.04 0.59 7.42 -51.93 -0.39 0.20 16 30 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 31 H 0.06 0.73 6.03 -51.93 -0.31 0.42 16 32 H 0.03 0.80 8.07 -51.92 -0.42 0.39 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.04 0.44 6.66 -51.93 -0.35 0.09 16 36 H 0.07 0.75 7.43 -51.92 -0.39 0.37 16 37 H 0.08 1.09 7.26 -51.93 -0.38 0.71 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.56 7.69 -51.93 -0.40 0.16 16 42 H 0.05 0.58 6.58 -51.93 -0.34 0.24 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.56 8.10 -51.93 -0.42 0.14 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.10 1.81 5.55 -51.93 -0.29 1.52 16 47 H 0.01 0.17 6.03 -51.93 -0.31 -0.14 16 LS Contribution 349.35 15.07 5.26 5.26 Total: -1.00 -32.49 349.35 -8.69 -41.17 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -8.21 Total: -1.15 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.16 Total: -0.83 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.64 Total: -48.48 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.49 -8.69 -41.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187912278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.783 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds