Wall clock time and date at job start Tue Mar 31 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47078 * 2 1 4 4 C 1.50707 * 109.46750 * 119.99705 * 2 1 3 5 5 O 1.21286 * 119.99309 * 104.65710 * 4 2 1 6 6 N 1.34771 * 119.99982 * 284.38540 * 4 2 1 7 7 C 1.46493 * 120.00123 * 0.27288 * 6 4 2 8 8 C 1.46502 * 119.99481 * 180.27630 * 6 4 2 9 9 C 1.50703 * 109.47268 * 90.00499 * 8 6 4 10 10 H 1.07998 * 119.99802 * 359.97438 * 9 8 6 11 11 C 1.37872 * 120.00070 * 180.02562 * 9 8 6 12 12 N 1.31524 * 120.00104 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00076 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46864 * 89.99394 * 13 11 9 15 15 H 1.48503 * 109.47077 * 209.99594 * 13 11 9 16 16 H 1.48497 * 109.46948 * 329.99561 * 13 11 9 17 17 N 1.46892 * 109.47249 * 239.99582 * 2 1 3 18 18 C 1.47637 * 111.00134 * 81.55635 * 17 2 1 19 19 C 1.50818 * 108.05416 * 150.34278 * 18 17 2 20 20 C 1.53824 * 111.61739 * 95.06393 * 19 18 17 21 21 C 1.54178 * 111.96977 * 319.03837 * 20 19 18 22 22 C 1.50754 * 112.60990 * 318.49554 * 21 20 19 23 23 H 1.09000 * 109.54180 * 333.14504 * 22 21 20 24 24 C 1.53000 * 109.61478 * 212.92602 * 22 21 20 25 25 C 1.39785 * 111.00277 * 312.66650 * 17 2 1 26 26 H 1.09000 * 109.47335 * 300.00178 * 1 2 3 27 27 H 1.09000 * 109.46671 * 59.99886 * 1 2 3 28 28 H 1.08997 * 109.47078 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47242 * 90.00633 * 7 6 4 30 30 H 1.09000 * 109.47468 * 209.99981 * 7 6 4 31 31 H 1.08993 * 109.47303 * 330.00159 * 7 6 4 32 32 H 1.09007 * 109.46541 * 209.99795 * 8 6 4 33 33 H 1.08998 * 109.47498 * 329.99418 * 8 6 4 34 34 H 0.96993 * 119.99917 * 180.02562 * 12 11 9 35 35 H 1.08991 * 109.74774 * 269.99210 * 18 17 2 36 36 H 1.09011 * 109.74027 * 30.70877 * 18 17 2 37 37 H 1.08997 * 109.05071 * 334.51067 * 19 18 17 38 38 H 1.08996 * 108.99414 * 215.56790 * 19 18 17 39 39 H 1.08996 * 108.97995 * 198.40378 * 20 19 18 40 40 H 1.09003 * 108.98490 * 79.68329 * 20 19 18 41 41 H 1.08999 * 108.85268 * 197.68539 * 21 20 19 42 42 H 1.09005 * 108.85090 * 79.30008 * 21 20 19 43 43 H 1.08996 * 109.47224 * 300.40257 * 24 22 21 44 44 H 1.09000 * 109.47407 * 60.40788 * 24 22 21 45 45 H 1.09003 * 109.46550 * 180.40739 * 24 22 21 46 46 H 1.09000 * 109.02078 * 309.71519 * 25 17 2 47 47 H 1.09004 * 109.01520 * 68.61484 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.4849 -1.8320 1.1408 6 7 1.9835 -0.0972 2.4297 7 6 1.4367 1.2575 2.5380 8 6 2.4773 -0.7856 3.6250 9 6 3.9414 -0.4810 3.8112 10 1 4.4530 0.1608 3.1092 11 6 4.6281 -1.0224 4.8771 12 7 4.0052 -1.8044 5.7317 13 14 6.4431 -0.6455 5.1076 14 1 6.5934 0.5696 5.9479 15 1 7.1064 -1.7942 5.7751 16 1 7.0722 -0.4121 3.7828 17 7 2.0197 -0.6925 -1.1993 18 6 2.0053 0.2049 -2.3715 19 6 3.1120 -0.2238 -3.3021 20 6 2.5963 -1.1744 -4.3959 21 6 1.5878 -2.1999 -3.8404 22 6 2.0023 -2.7531 -2.5007 23 1 3.0874 -2.7087 -2.4077 24 6 1.5372 -4.2056 -2.3787 25 6 1.3529 -1.9071 -1.3838 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.3645 1.2026 2.7267 30 1 1.9239 1.7814 3.3604 31 1 1.6147 1.7966 1.6076 32 1 1.9211 -0.4428 4.4975 33 1 2.3419 -1.8607 3.5072 34 1 4.4882 -2.1850 6.4818 35 1 1.0451 0.1291 -2.8816 36 1 2.1720 1.2331 -2.0501 37 1 3.8852 -0.7312 -2.7253 38 1 3.5420 0.6602 -3.7729 39 1 3.4420 -1.7081 -4.8294 40 1 2.1117 -0.5875 -5.1762 41 1 1.4965 -3.0233 -4.5487 42 1 0.6158 -1.7175 -3.7369 43 1 0.4524 -4.2491 -2.4750 44 1 1.9962 -4.8016 -3.1674 45 1 1.8317 -4.6009 -1.4065 46 1 1.3772 -2.4710 -0.4513 47 1 0.3152 -1.7058 -1.6500 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187912278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:22 Heat of formation + Delta-G solvation = -54.414551 kcal Electronic energy + Delta-G solvation = -24019.430102 eV Core-core repulsion = 20815.236395 eV Total energy + Delta-G solvation = -3204.193707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.56208 -39.73577 -36.61171 -36.24368 -34.70807 -34.19792 -31.64879 -29.56908 -28.64980 -27.43158 -26.67557 -25.81996 -25.03904 -23.21992 -21.28727 -20.18843 -19.79868 -18.68604 -17.89335 -17.37885 -16.66098 -16.35936 -16.20725 -15.92159 -15.55420 -15.50533 -14.89850 -14.51873 -14.41795 -14.08326 -13.77830 -13.61660 -13.50300 -13.40888 -13.32710 -13.18377 -12.96092 -12.77489 -12.58828 -12.50878 -12.36695 -12.20398 -12.11531 -12.01490 -11.69228 -11.62751 -11.35761 -11.15643 -11.02886 -10.63798 -10.30465 -9.37523 -8.95244 -8.21873 -6.36589 1.35212 1.38755 1.49116 1.91127 2.29657 2.42189 3.06081 3.07441 3.68304 3.86507 3.92589 4.00674 4.08389 4.12299 4.24055 4.29306 4.43545 4.45356 4.59096 4.64917 4.65567 4.69807 4.75382 4.77324 4.81257 4.90419 4.93879 4.97154 5.02775 5.04307 5.14584 5.16121 5.23089 5.24048 5.28579 5.38939 5.45137 5.56241 5.58135 5.61941 5.87431 6.07873 6.21273 6.61805 6.71906 6.86573 7.30130 7.58636 8.84966 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019830 B = 0.004539 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.696319 B = 6166.650642 C = 6467.394839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.080 3.920 3 H 0.121 0.879 4 C 0.500 3.500 5 O -0.581 6.581 6 N -0.612 5.612 7 C 0.078 3.922 8 C 0.262 3.738 9 C -0.540 4.540 10 H 0.050 0.950 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.261 1.261 15 H -0.281 1.281 16 H -0.275 1.275 17 N -0.554 5.554 18 C 0.069 3.931 19 C -0.119 4.119 20 C -0.112 4.112 21 C -0.110 4.110 22 C -0.086 4.086 23 H 0.054 0.946 24 C -0.140 4.140 25 C 0.081 3.919 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.047 0.953 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.022 0.978 33 H -0.006 1.006 34 H 0.267 0.733 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.046 0.954 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.033 0.967 46 H 0.051 0.949 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.800 7.137 -19.667 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.031 4.031 3 H 0.139 0.861 4 C 0.288 3.712 5 O -0.461 6.461 6 N -0.344 5.344 7 C -0.064 4.064 8 C 0.141 3.859 9 C -0.578 4.578 10 H 0.069 0.931 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.186 1.186 15 H -0.206 1.206 16 H -0.200 1.200 17 N -0.278 5.278 18 C -0.057 4.057 19 C -0.157 4.157 20 C -0.150 4.150 21 C -0.147 4.147 22 C -0.105 4.105 23 H 0.072 0.928 24 C -0.197 4.197 25 C -0.049 4.049 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.040 0.960 33 H 0.012 0.988 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.052 0.948 46 H 0.070 0.930 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -8.102 6.344 -19.486 22.036 hybrid contribution 0.358 -0.261 0.844 0.953 sum -7.744 6.083 -18.642 21.083 Atomic orbital electron populations 1.22315 0.93215 1.02663 1.04615 1.21640 0.95624 0.98132 0.87703 0.86121 1.21312 0.78293 0.86429 0.85192 1.90588 1.47639 1.21951 1.85908 1.48164 1.60841 1.17483 1.07906 1.21974 0.98841 0.81842 1.03763 1.18693 0.93452 0.91536 0.82265 1.21692 0.96090 1.29990 1.10073 0.93133 1.25850 1.03352 0.94540 0.95379 1.70055 1.38492 1.33182 1.15197 0.85424 0.78951 0.78295 0.78187 1.18580 1.20611 1.20023 1.58453 1.60418 1.05257 1.03639 1.21940 0.98913 0.95446 0.89386 1.21415 0.98158 0.99661 0.96491 1.21888 0.98709 0.96781 0.97592 1.21453 0.99138 0.98784 0.95326 1.20943 0.99970 0.94694 0.94884 0.92763 1.21786 1.01543 0.95347 1.01063 1.21072 0.94282 0.90387 0.99124 0.90222 0.88963 0.93354 0.91052 0.91637 0.88993 0.95964 0.98772 0.92440 0.92470 0.89703 0.93469 0.90292 0.92418 0.90538 0.91205 0.92053 0.91916 0.91302 0.94820 0.93027 0.95486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.84 8.20 71.98 0.59 -3.25 16 2 C 0.08 2.36 1.90 44.17 0.08 2.45 16 3 H 0.12 2.97 5.90 -2.39 -0.01 2.95 16 4 C 0.50 21.57 6.79 87.66 0.60 22.16 16 5 O -0.58 -31.41 13.88 -3.05 -0.04 -31.45 16 6 N -0.61 -26.65 2.86 -851.13 -2.43 -29.09 16 7 C 0.08 2.34 9.32 127.77 1.19 3.53 16 8 C 0.26 14.59 5.16 85.63 0.44 15.04 16 9 C -0.54 -32.10 9.39 25.60 0.24 -31.86 16 10 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 11 C 0.01 0.44 5.46 84.65 0.46 0.91 16 12 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 13 Si 0.97 46.14 29.54 68.60 2.03 48.16 16 14 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 15 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 17 N -0.55 -16.31 3.65 -892.27 -3.25 -19.57 16 18 C 0.07 1.42 5.04 85.45 0.43 1.85 16 19 C -0.12 -2.43 5.41 30.16 0.16 -2.27 16 20 C -0.11 -1.95 5.91 31.27 0.18 -1.76 16 21 C -0.11 -2.11 4.88 30.26 0.15 -1.96 16 22 C -0.09 -2.27 2.44 -11.04 -0.03 -2.30 16 23 H 0.05 1.71 7.11 -2.39 -0.02 1.70 16 24 C -0.14 -3.46 8.90 71.98 0.64 -2.82 16 25 C 0.08 2.44 3.00 88.07 0.26 2.70 16 26 H 0.08 1.64 6.38 -2.39 -0.02 1.62 16 27 H 0.09 1.53 7.95 -2.39 -0.02 1.51 16 28 H 0.05 1.27 6.55 -2.39 -0.02 1.26 16 29 H 0.07 1.75 7.42 -2.38 -0.02 1.74 16 30 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 31 H 0.09 2.09 6.03 -2.39 -0.01 2.07 16 32 H 0.02 1.25 8.07 -2.38 -0.02 1.23 16 33 H -0.01 -0.38 7.42 -2.39 -0.02 -0.40 16 34 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.06 1.01 6.66 -2.39 -0.02 0.99 16 36 H 0.08 1.49 7.43 -2.38 -0.02 1.47 16 37 H 0.05 1.28 7.26 -2.39 -0.02 1.26 16 38 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.18 7.69 -2.39 -0.02 1.16 16 42 H 0.06 1.11 6.58 -2.38 -0.02 1.09 16 43 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 45 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.05 2.05 5.55 -2.39 -0.01 2.04 16 47 H 0.03 0.72 6.03 -2.39 -0.01 0.71 16 Total: -1.00 -76.18 349.35 2.92 -73.26 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.93 Total: 13.48 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 5.41 Total: 2.41 kcal Atomic # 7 Polarization: -100.46 SS G_CDS: -5.40 Total: -105.86 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.04 Total: -31.45 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -76.18 2.92 -73.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187912278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.848 kcal (2) G-P(sol) polarization free energy of solvation -76.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds