Wall clock time and date at job start Tue Mar 31 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.78515 * 2 1 4 4 C 1.54235 * 109.63035 * 239.51135 * 2 1 3 5 5 C 1.45542 * 112.32952 * 160.35157 * 4 2 1 6 6 C 1.54058 * 112.51040 * 61.98309 * 5 4 2 7 7 C 1.50479 * 108.47686 * 279.95501 * 6 5 4 8 8 H 1.09002 * 108.87504 * 333.34841 * 7 6 5 9 9 N 1.46504 * 108.87474 * 214.90677 * 7 6 5 10 10 C 1.34772 * 119.99958 * 82.02406 * 9 7 6 11 11 O 1.21588 * 120.00196 * 359.97438 * 10 9 7 12 12 N 1.34773 * 120.00019 * 180.02562 * 10 9 7 13 13 C 1.46500 * 120.00008 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47088 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47038 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47006 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99968 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99796 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00559 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99986 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46885 * 59.99956 * 20 18 16 22 22 H 1.48496 * 109.47079 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46762 * 300.00024 * 20 18 16 24 24 C 1.54070 * 112.49905 * 94.12605 * 7 6 5 25 25 C 1.50481 * 109.62614 * 120.47956 * 2 1 3 26 26 H 1.08995 * 109.47613 * 180.48309 * 1 2 3 27 27 H 1.09004 * 109.47704 * 300.48898 * 1 2 3 28 28 H 1.09006 * 109.46683 * 60.48531 * 1 2 3 29 29 H 1.09002 * 108.89589 * 281.05754 * 4 2 1 30 30 H 1.09003 * 108.89630 * 39.64693 * 4 2 1 31 31 H 1.08996 * 108.89625 * 182.64364 * 5 4 2 32 32 H 1.09002 * 108.89637 * 301.13360 * 5 4 2 33 33 H 1.08994 * 109.67673 * 160.24462 * 6 5 4 34 34 H 1.09005 * 109.79615 * 39.72811 * 6 5 4 35 35 H 0.96997 * 119.99844 * 262.01142 * 9 7 6 36 36 H 0.96994 * 120.00184 * 359.97438 * 12 10 9 37 37 H 1.08996 * 109.47177 * 299.99310 * 13 12 10 38 38 H 1.09000 * 109.47449 * 59.99836 * 13 12 10 39 39 H 1.09002 * 109.47165 * 299.99842 * 14 13 12 40 40 H 1.08991 * 109.47042 * 59.99924 * 14 13 12 41 41 H 1.08994 * 109.47722 * 299.99946 * 15 14 13 42 42 H 1.09000 * 109.47368 * 60.00175 * 15 14 13 43 43 H 0.96995 * 120.00332 * 179.97438 * 19 18 16 44 44 H 1.09006 * 108.80889 * 197.42412 * 24 7 6 45 45 H 1.09000 * 108.72350 * 79.08891 * 24 7 6 46 46 H 1.09001 * 108.87575 * 334.64040 * 25 2 1 47 47 H 1.08999 * 108.87377 * 93.08163 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0481 -0.7371 -1.2518 5 6 3.4281 -0.3951 -1.5633 6 6 4.4028 -0.7943 -0.4390 7 6 4.3394 0.2518 0.6408 8 1 4.0349 1.1994 0.1964 9 7 5.6737 0.4121 1.2243 10 6 6.5873 1.1917 0.6129 11 8 6.3045 1.7616 -0.4232 12 7 7.8149 1.3387 1.1494 13 6 8.8083 2.1857 0.4845 14 6 10.1063 2.1812 1.2944 15 6 11.1440 3.0653 0.5997 16 6 12.4223 3.0614 1.3978 17 1 12.4880 2.4863 2.3095 18 6 13.5077 3.7929 0.9645 19 7 13.4277 4.4937 -0.1456 20 14 15.0921 3.7887 1.9541 21 1 15.6109 2.4007 2.0519 22 1 16.0992 4.6466 1.2797 23 1 14.8258 4.3149 3.3170 24 6 3.3466 -0.1157 1.7602 25 6 2.0354 -0.7189 1.2215 26 1 -0.3634 -1.0276 0.0087 27 1 -0.3635 0.5214 0.8856 28 1 -0.3633 0.5063 -0.8944 29 1 1.9804 -1.8116 -1.0821 30 1 1.4188 -0.4741 -2.1021 31 1 3.7207 -0.9079 -2.4795 32 1 3.4972 0.6806 -1.7255 33 1 5.4167 -0.8507 -0.8351 34 1 4.1159 -1.7623 -0.0281 35 1 5.8994 -0.0428 2.0508 36 1 8.0407 0.8837 1.9757 37 1 9.0028 1.8003 -0.5163 38 1 8.4280 3.2047 0.4139 39 1 9.9115 2.5669 2.2952 40 1 10.4868 1.1623 1.3654 41 1 11.3387 2.6793 -0.4009 42 1 10.7638 4.0843 0.5283 43 1 14.1911 5.0086 -0.4502 44 1 3.1119 0.7830 2.3308 45 1 3.8199 -0.8393 2.4240 46 1 1.2760 -0.6655 2.0016 47 1 2.2061 -1.7655 0.9693 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187975587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:52 Heat of formation + Delta-G solvation = -73.111667 kcal Electronic energy + Delta-G solvation = -22165.432931 eV Core-core repulsion = 18960.428456 eV Total energy + Delta-G solvation = -3205.004475 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.31940 -38.89350 -35.67167 -34.77796 -33.31947 -32.98089 -31.73668 -30.63994 -27.65602 -26.50106 -24.79354 -23.40747 -22.79478 -20.84198 -20.71290 -20.29733 -19.61758 -17.90324 -16.63225 -16.15706 -15.65887 -15.22894 -15.08275 -14.76739 -14.52524 -14.33497 -13.98720 -13.84700 -13.59262 -13.38624 -13.08605 -12.71919 -12.36322 -12.25507 -11.81210 -11.76932 -11.63660 -11.35844 -11.02512 -10.87450 -10.84042 -10.69293 -10.66367 -10.60521 -10.58778 -10.41149 -9.99585 -9.82979 -9.40914 -9.11655 -9.11219 -8.54473 -8.35301 -5.99991 -4.03172 2.88001 3.32968 3.37667 3.39615 3.44521 4.25857 4.34734 4.41637 4.47390 4.62578 4.73717 4.89006 4.89979 5.06566 5.15937 5.21840 5.30008 5.35467 5.42999 5.45018 5.55394 5.67940 5.72508 5.73713 5.83330 5.85269 5.89366 5.91541 5.99033 6.02843 6.14925 6.21384 6.22712 6.26492 6.58256 6.61826 6.65682 6.85785 7.05675 7.14750 7.65643 7.79031 7.98955 8.22869 8.39877 8.83624 9.03355 9.60743 11.11238 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.051047 B = 0.002304 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.382084 B =12149.616990 C =12393.853556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.074 0.926 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.125 4.125 7 C 0.165 3.835 8 H 0.084 0.916 9 N -0.752 5.752 10 C 0.699 3.301 11 O -0.592 6.592 12 N -0.743 5.743 13 C 0.136 3.864 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.123 4.123 25 C -0.108 4.108 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.391 0.609 36 H 0.393 0.607 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.262 0.738 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.374 -12.941 3.228 28.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.093 0.907 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.164 4.164 7 C 0.060 3.940 8 H 0.102 0.898 9 N -0.407 5.407 10 C 0.399 3.601 11 O -0.470 6.470 12 N -0.398 5.398 13 C 0.012 3.988 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.161 4.161 25 C -0.146 4.146 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.224 0.776 36 H 0.226 0.774 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.511 -12.257 2.125 28.382 hybrid contribution 1.237 -0.385 1.306 1.839 sum -24.274 -12.642 3.431 27.583 Atomic orbital electron populations 1.21878 0.95153 1.01591 1.01638 1.20974 0.95345 1.00277 0.94832 0.90715 1.20570 0.96608 1.00107 0.97578 1.20364 0.94529 1.02352 0.98284 1.21746 1.00247 0.98502 0.95859 1.20671 0.80503 0.99833 0.92950 0.89774 1.45424 1.13477 1.52855 1.28982 1.16034 0.80687 0.79789 0.83594 1.90911 1.79462 1.52352 1.24269 1.45401 1.12207 1.53293 1.28856 1.21486 0.87346 0.93537 0.96403 1.21885 0.93640 1.01333 0.98955 1.19024 0.92081 0.94412 0.95851 1.21169 0.97287 1.28877 1.08747 0.92720 1.25035 0.98895 0.95448 0.95132 1.69956 1.31047 1.30423 1.21846 0.86638 0.83085 0.77957 0.80180 1.20266 1.21281 1.20262 1.22152 0.95193 1.01294 0.97441 1.21351 0.95863 0.99899 0.97490 0.92804 0.92757 0.92715 0.92319 0.92265 0.92200 0.91532 0.91177 0.91831 0.77559 0.77428 0.92039 0.92047 0.92813 0.92817 0.96250 0.96259 0.92877 0.91599 0.91703 0.91809 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 8.87 37.16 0.33 -0.54 16 2 C -0.10 -0.67 2.40 -91.23 -0.22 -0.89 16 3 H 0.07 0.62 6.97 -51.93 -0.36 0.25 16 4 C -0.11 -0.83 4.69 -29.60 -0.14 -0.97 16 5 C -0.12 -1.10 5.24 -29.70 -0.16 -1.26 16 6 C -0.12 -1.24 5.24 -27.44 -0.14 -1.39 16 7 C 0.17 1.67 1.95 -68.63 -0.13 1.54 16 8 H 0.08 1.05 6.07 -51.93 -0.32 0.74 16 9 N -0.75 -8.34 4.98 -59.37 -0.30 -8.63 16 10 C 0.70 10.88 8.23 -86.93 -0.72 10.16 16 11 O -0.59 -11.71 16.00 5.29 0.08 -11.63 16 12 N -0.74 -11.04 5.56 -65.23 -0.36 -11.41 16 13 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 14 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 20 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.12 -0.89 5.39 -25.62 -0.14 -1.03 16 25 C -0.11 -0.69 4.89 -27.44 -0.13 -0.82 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.30 8.11 -51.93 -0.42 -0.12 16 28 H 0.05 0.32 8.13 -51.93 -0.42 -0.10 16 29 H 0.06 0.40 7.47 -51.93 -0.39 0.02 16 30 H 0.06 0.42 7.97 -51.93 -0.41 0.01 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.73 7.47 -51.93 -0.39 0.35 16 33 H 0.07 0.88 7.69 -51.93 -0.40 0.48 16 34 H 0.06 0.54 7.00 -51.93 -0.36 0.17 16 35 H 0.39 3.21 8.44 -40.82 -0.34 2.87 16 36 H 0.39 4.65 8.49 -40.82 -0.35 4.30 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.40 7.91 -51.93 -0.41 -0.01 16 46 H 0.06 0.36 7.68 -51.93 -0.40 -0.04 16 47 H 0.06 0.39 6.64 -51.93 -0.34 0.05 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -32.57 363.44 -10.21 -42.77 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -8.66 Total: 1.39 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.16 Total: -8.28 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.08 Total: -46.32 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.63 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.57 -10.21 -42.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187975587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.338 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds