Wall clock time and date at job start Tue Mar 31 2020 06:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.62737 * 2 1 4 4 C 1.50478 * 109.78586 * 120.48464 * 2 1 3 5 5 C 1.54063 * 112.49599 * 213.95705 * 4 2 1 6 6 C 1.53811 * 112.88838 * 318.13034 * 5 4 2 7 7 C 1.50475 * 112.64241 * 318.57527 * 6 5 4 8 8 H 1.09004 * 109.62550 * 334.08645 * 7 6 5 9 9 N 1.46500 * 109.63157 * 213.70005 * 7 6 5 10 10 C 1.34778 * 119.99806 * 85.38276 * 9 7 6 11 11 O 1.21581 * 120.00499 * 0.02562 * 10 9 7 12 12 N 1.34783 * 119.99586 * 180.02562 * 10 9 7 13 13 C 1.46505 * 119.99652 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.46881 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47119 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 14 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 C 1.54237 * 108.68383 * 93.89141 * 7 6 5 25 25 C 1.45551 * 112.40615 * 280.11160 * 24 7 6 26 26 H 1.09001 * 109.46840 * 180.38201 * 1 2 3 27 27 H 1.08993 * 109.46972 * 300.38984 * 1 2 3 28 28 H 1.09003 * 109.46641 * 60.39030 * 1 2 3 29 29 H 1.09006 * 108.87389 * 334.73189 * 4 2 1 30 30 H 1.09000 * 108.87871 * 93.27186 * 4 2 1 31 31 H 1.09001 * 108.81485 * 79.14315 * 5 4 2 32 32 H 1.09000 * 108.81448 * 197.52734 * 5 4 2 33 33 H 1.09000 * 108.93344 * 197.66991 * 6 5 4 34 34 H 1.09004 * 108.67823 * 79.30578 * 6 5 4 35 35 H 0.96995 * 120.00227 * 265.38789 * 9 7 6 36 36 H 0.96993 * 119.99868 * 0.02562 * 12 10 9 37 37 H 1.08998 * 109.46922 * 60.00542 * 13 12 10 38 38 H 1.08994 * 109.47094 * 300.00180 * 13 12 10 39 39 H 1.09004 * 109.46806 * 60.00265 * 14 13 12 40 40 H 1.09000 * 109.47828 * 300.00569 * 14 13 12 41 41 H 1.09004 * 109.47066 * 60.00422 * 15 14 13 42 42 H 1.08994 * 109.47405 * 300.00252 * 15 14 13 43 43 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 44 44 H 1.09001 * 108.89289 * 40.86361 * 24 7 6 45 45 H 1.08998 * 108.89771 * 159.35311 * 24 7 6 46 46 H 1.08996 * 108.89331 * 182.68574 * 25 24 7 47 47 H 1.08996 * 108.89255 * 301.18348 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0394 -0.7183 1.2202 5 6 3.3499 -0.1118 1.7571 6 6 4.3410 0.2556 0.6397 7 6 4.4043 -0.7863 -0.4441 8 1 4.1194 -1.7563 -0.0365 9 7 5.7663 -0.8580 -0.9789 10 6 6.6884 -1.6318 -0.3726 11 8 6.3899 -2.2706 0.6178 12 7 7.9416 -1.6973 -0.8644 13 6 8.9438 -2.5388 -0.2057 14 6 10.2715 -2.4349 -0.9589 15 6 11.3180 -3.3142 -0.2715 16 6 12.6259 -3.2114 -1.0130 17 1 12.7032 -2.5815 -1.8869 18 6 13.7257 -3.9166 -0.5720 19 7 14.8685 -3.8226 -1.2159 20 14 13.5922 -5.0055 0.9399 21 1 13.1890 -6.3746 0.5298 22 1 14.9075 -5.0618 1.6270 23 1 12.5741 -4.4457 1.8648 24 6 3.4263 -0.3894 -1.5688 25 6 2.0481 -0.7349 -1.2531 26 1 -0.3633 -1.0277 0.0069 27 1 -0.3633 0.5198 0.8864 28 1 -0.3633 0.5078 -0.8935 29 1 1.2811 -0.6674 2.0016 30 1 2.2142 -1.7639 0.9667 31 1 3.1136 0.7858 2.3286 32 1 3.8261 -0.8344 2.4198 33 1 5.3341 0.3746 1.0729 34 1 4.0344 1.2044 0.1993 35 1 6.0045 -0.3486 -1.7692 36 1 8.1799 -1.1874 -1.6543 37 1 8.6058 -3.5751 -0.2073 38 1 9.0814 -2.2030 0.8220 39 1 10.6097 -1.3987 -0.9578 40 1 10.1336 -2.7709 -1.9866 41 1 10.9796 -4.3504 -0.2730 42 1 11.4561 -2.9786 0.7563 43 1 15.6421 -4.3190 -0.9059 44 1 3.4923 0.6866 -1.7304 45 1 3.7172 -0.9008 -2.4863 46 1 1.4157 -0.4745 -2.1018 47 1 1.9837 -1.8098 -1.0839 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187975611.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:55 Heat of formation + Delta-G solvation = -70.409282 kcal Electronic energy + Delta-G solvation = -22212.649240 eV Core-core repulsion = 19007.761949 eV Total energy + Delta-G solvation = -3204.887291 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.37586 -38.95008 -35.73870 -34.83732 -33.32269 -32.86502 -31.98312 -31.00294 -27.77516 -26.85511 -24.69501 -23.42562 -22.71810 -20.94428 -20.84023 -20.22391 -19.43262 -18.00490 -16.92913 -16.50169 -15.66253 -15.25994 -15.07052 -14.92469 -14.55746 -14.15823 -14.12843 -13.84813 -13.59004 -13.42532 -13.25887 -12.68903 -12.67195 -12.34652 -11.95513 -11.88159 -11.76344 -11.47162 -11.08154 -11.04278 -10.88589 -10.86283 -10.74751 -10.61006 -10.35437 -10.22562 -9.97802 -9.79501 -9.65336 -9.21328 -9.17919 -8.63595 -8.54233 -6.05258 -4.03784 2.81027 3.32619 3.36796 3.40022 3.44860 4.23482 4.27121 4.35217 4.45724 4.56942 4.74540 4.88437 4.92148 5.04677 5.06497 5.15940 5.28940 5.29091 5.39742 5.44736 5.57504 5.58421 5.62924 5.70964 5.72165 5.76105 5.85984 5.91586 5.92020 6.00634 6.06584 6.08056 6.15706 6.19104 6.42252 6.49505 6.56183 6.73199 6.85616 7.06444 7.25486 7.38706 7.77177 8.15678 8.51424 8.75908 8.98619 9.57109 11.07950 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045136 B = 0.002445 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.199288 B =11448.986218 C =11770.925033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.113 4.113 6 C -0.128 4.128 7 C 0.167 3.833 8 H 0.090 0.910 9 N -0.748 5.748 10 C 0.700 3.300 11 O -0.593 6.593 12 N -0.743 5.743 13 C 0.133 3.867 14 C -0.113 4.113 15 C -0.011 4.011 16 C -0.521 4.521 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 C -0.124 4.124 25 C -0.111 4.111 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.393 0.607 36 H 0.394 0.606 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.015 0.985 42 H 0.019 0.981 43 H 0.263 0.737 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.064 0.936 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.893 10.162 0.149 30.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.151 4.151 6 C -0.167 4.167 7 C 0.062 3.938 8 H 0.108 0.892 9 N -0.404 5.404 10 C 0.400 3.600 11 O -0.471 6.471 12 N -0.397 5.397 13 C 0.010 3.990 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.559 4.559 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.542 5.542 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.162 4.162 25 C -0.149 4.149 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.226 0.774 36 H 0.228 0.772 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.033 0.967 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -28.960 9.477 1.089 30.490 hybrid contribution 0.425 -0.087 -0.026 0.435 sum -28.535 9.390 1.063 30.059 Atomic orbital electron populations 1.21886 0.95205 1.01742 1.01500 1.20940 0.95249 1.00023 0.94790 0.90879 1.21456 0.96723 1.00085 0.97244 1.21772 0.94807 1.00838 0.97659 1.21737 0.99996 0.98503 0.96436 1.20486 0.79848 1.00346 0.93158 0.89227 1.45276 1.10958 1.50894 1.33236 1.16018 0.80766 0.80156 0.83049 1.90906 1.79978 1.48975 1.27244 1.45348 1.09672 1.51463 1.33257 1.21491 0.87152 0.93790 0.96569 1.21701 0.92557 1.01418 0.99394 1.19503 0.94329 0.94675 0.96412 1.21102 0.93057 1.28365 1.13406 0.91032 1.25037 0.95222 0.96467 0.96829 1.69913 1.01237 1.42636 1.40443 0.86771 0.77493 0.81258 0.83757 1.20244 1.21391 1.18856 1.20738 0.95167 1.01938 0.98317 1.20481 0.95582 1.00845 0.97994 0.92709 0.92744 0.92818 0.92145 0.91933 0.92331 0.91783 0.91549 0.92269 0.77368 0.77231 0.92055 0.92051 0.92170 0.92187 0.96715 0.96291 0.92721 0.91614 0.91429 0.91760 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.88 37.16 0.33 -0.48 16 2 C -0.09 -0.59 2.39 -91.23 -0.22 -0.81 16 3 H 0.07 0.48 6.99 -51.93 -0.36 0.12 16 4 C -0.12 -0.89 4.89 -27.44 -0.13 -1.03 16 5 C -0.11 -1.00 5.84 -25.75 -0.15 -1.15 16 6 C -0.13 -1.21 5.02 -27.57 -0.14 -1.35 16 7 C 0.17 1.62 2.12 -68.54 -0.15 1.48 16 8 H 0.09 1.09 6.44 -51.93 -0.33 0.75 16 9 N -0.75 -7.93 4.98 -59.28 -0.30 -8.23 16 10 C 0.70 10.43 8.39 -86.91 -0.73 9.70 16 11 O -0.59 -11.31 16.01 5.29 0.08 -11.22 16 12 N -0.74 -10.47 5.56 -65.23 -0.36 -10.84 16 13 C 0.13 2.27 5.67 -4.04 -0.02 2.25 16 14 C -0.11 -2.12 5.27 -26.74 -0.14 -2.27 16 15 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 16 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 20 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 24 C -0.12 -0.85 4.77 -29.60 -0.14 -0.99 16 25 C -0.11 -0.72 4.69 -29.60 -0.14 -0.85 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.29 8.11 -51.93 -0.42 -0.13 16 28 H 0.05 0.27 8.13 -51.93 -0.42 -0.15 16 29 H 0.06 0.42 7.69 -51.93 -0.40 0.02 16 30 H 0.06 0.53 6.63 -51.93 -0.34 0.18 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.78 7.80 -51.93 -0.41 0.38 16 34 H 0.06 0.47 6.66 -51.93 -0.35 0.13 16 35 H 0.39 3.05 8.62 -40.82 -0.35 2.70 16 36 H 0.39 4.42 8.49 -40.82 -0.35 4.08 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.01 0.34 7.58 -51.93 -0.39 -0.05 16 42 H 0.02 0.45 7.19 -51.93 -0.37 0.08 16 43 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 44 H 0.07 0.40 7.48 -51.93 -0.39 0.01 16 45 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 46 H 0.06 0.36 7.96 -51.93 -0.41 -0.05 16 47 H 0.06 0.45 7.47 -51.93 -0.39 0.06 16 LS Contribution 360.49 15.07 5.43 5.43 Total: -1.00 -32.99 360.49 -9.87 -42.85 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -8.66 Total: 1.02 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -2.17 Total: -9.15 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.12 Total: -46.16 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.99 -9.87 -42.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187975611.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.555 kcal (2) G-P(sol) polarization free energy of solvation -32.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds