Wall clock time and date at job start Tue Mar 31 2020 06:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.62737 * 2 1 4 4 C 1.50478 * 109.78586 * 120.48464 * 2 1 3 5 5 C 1.54063 * 112.49599 * 213.95705 * 4 2 1 6 6 C 1.53811 * 112.88838 * 318.13034 * 5 4 2 7 7 C 1.50475 * 112.64241 * 318.57527 * 6 5 4 8 8 H 1.09004 * 109.62550 * 334.08645 * 7 6 5 9 9 N 1.46500 * 109.63157 * 213.70005 * 7 6 5 10 10 C 1.34778 * 119.99806 * 85.38276 * 9 7 6 11 11 O 1.21581 * 120.00499 * 0.02562 * 10 9 7 12 12 N 1.34783 * 119.99586 * 180.02562 * 10 9 7 13 13 C 1.46505 * 119.99652 * 180.02562 * 12 10 9 14 14 C 1.52994 * 109.46881 * 179.97438 * 13 12 10 15 15 C 1.52996 * 109.47119 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 14 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 C 1.54237 * 108.68383 * 93.89141 * 7 6 5 25 25 C 1.45551 * 112.40615 * 280.11160 * 24 7 6 26 26 H 1.09001 * 109.46840 * 180.38201 * 1 2 3 27 27 H 1.08993 * 109.46972 * 300.38984 * 1 2 3 28 28 H 1.09003 * 109.46641 * 60.39030 * 1 2 3 29 29 H 1.09006 * 108.87389 * 334.73189 * 4 2 1 30 30 H 1.09000 * 108.87871 * 93.27186 * 4 2 1 31 31 H 1.09001 * 108.81485 * 79.14315 * 5 4 2 32 32 H 1.09000 * 108.81448 * 197.52734 * 5 4 2 33 33 H 1.09000 * 108.93344 * 197.66991 * 6 5 4 34 34 H 1.09004 * 108.67823 * 79.30578 * 6 5 4 35 35 H 0.96995 * 120.00227 * 265.38789 * 9 7 6 36 36 H 0.96993 * 119.99868 * 0.02562 * 12 10 9 37 37 H 1.08998 * 109.46922 * 60.00542 * 13 12 10 38 38 H 1.08994 * 109.47094 * 300.00180 * 13 12 10 39 39 H 1.09004 * 109.46806 * 60.00265 * 14 13 12 40 40 H 1.09000 * 109.47828 * 300.00569 * 14 13 12 41 41 H 1.09004 * 109.47066 * 60.00422 * 15 14 13 42 42 H 1.08994 * 109.47405 * 300.00252 * 15 14 13 43 43 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 44 44 H 1.09001 * 108.89289 * 40.86361 * 24 7 6 45 45 H 1.08998 * 108.89771 * 159.35311 * 24 7 6 46 46 H 1.08996 * 108.89331 * 182.68574 * 25 24 7 47 47 H 1.08996 * 108.89255 * 301.18348 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8962 1.0266 0.0000 4 6 2.0394 -0.7183 1.2202 5 6 3.3499 -0.1118 1.7571 6 6 4.3410 0.2556 0.6397 7 6 4.4043 -0.7863 -0.4441 8 1 4.1194 -1.7563 -0.0365 9 7 5.7663 -0.8580 -0.9789 10 6 6.6884 -1.6318 -0.3726 11 8 6.3899 -2.2706 0.6178 12 7 7.9416 -1.6973 -0.8644 13 6 8.9438 -2.5388 -0.2057 14 6 10.2715 -2.4349 -0.9589 15 6 11.3180 -3.3142 -0.2715 16 6 12.6259 -3.2114 -1.0130 17 1 12.7032 -2.5815 -1.8869 18 6 13.7257 -3.9166 -0.5720 19 7 14.8685 -3.8226 -1.2159 20 14 13.5922 -5.0055 0.9399 21 1 13.1890 -6.3746 0.5298 22 1 14.9075 -5.0618 1.6270 23 1 12.5741 -4.4457 1.8648 24 6 3.4263 -0.3894 -1.5688 25 6 2.0481 -0.7349 -1.2531 26 1 -0.3633 -1.0277 0.0069 27 1 -0.3633 0.5198 0.8864 28 1 -0.3633 0.5078 -0.8935 29 1 1.2811 -0.6674 2.0016 30 1 2.2142 -1.7639 0.9667 31 1 3.1136 0.7858 2.3286 32 1 3.8261 -0.8344 2.4198 33 1 5.3341 0.3746 1.0729 34 1 4.0344 1.2044 0.1993 35 1 6.0045 -0.3486 -1.7692 36 1 8.1799 -1.1874 -1.6543 37 1 8.6058 -3.5751 -0.2073 38 1 9.0814 -2.2030 0.8220 39 1 10.6097 -1.3987 -0.9578 40 1 10.1336 -2.7709 -1.9866 41 1 10.9796 -4.3504 -0.2730 42 1 11.4561 -2.9786 0.7563 43 1 15.6421 -4.3190 -0.9059 44 1 3.4923 0.6866 -1.7304 45 1 3.7172 -0.9008 -2.4863 46 1 1.4157 -0.4745 -2.1018 47 1 1.9837 -1.8098 -1.0839 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187975611.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:54 Heat of formation + Delta-G solvation = -91.891554 kcal Electronic energy + Delta-G solvation = -22213.580781 eV Core-core repulsion = 19007.761949 eV Total energy + Delta-G solvation = -3205.818832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.35278 -39.81401 -37.08128 -35.86766 -35.13337 -33.61433 -33.36074 -32.21505 -29.01416 -27.97994 -25.60014 -24.35190 -23.97415 -22.24220 -21.75649 -21.55773 -20.10257 -19.22264 -18.83475 -17.64522 -16.80510 -16.43995 -16.08009 -15.93385 -15.59801 -15.43224 -15.36153 -14.87954 -14.77388 -14.33608 -14.09615 -13.86424 -13.79417 -13.67214 -13.32301 -12.89410 -12.72243 -12.68545 -12.33266 -12.14029 -11.91556 -11.78655 -11.76741 -11.59096 -11.43845 -11.37635 -11.32792 -11.22277 -11.17807 -10.97482 -10.75949 -10.32336 -9.73501 -8.29277 -6.32909 1.36991 1.38587 1.50608 1.74383 2.18156 2.36530 3.06371 3.33665 3.62104 3.69165 3.98310 4.11154 4.16531 4.21939 4.22211 4.26296 4.39319 4.47144 4.49800 4.52001 4.76993 4.78609 4.90082 4.90766 4.90840 4.98069 5.04571 5.10290 5.13002 5.16204 5.24579 5.30227 5.34327 5.38707 5.42777 5.47556 5.48584 5.54418 5.56630 5.63483 5.65150 5.68113 6.07042 6.27749 6.74877 7.15143 7.31780 7.62513 8.87001 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045136 B = 0.002445 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.199288 B =11448.986218 C =11770.925033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.079 0.921 4 C -0.114 4.114 5 C -0.112 4.112 6 C -0.124 4.124 7 C 0.164 3.836 8 H 0.062 0.938 9 N -0.730 5.730 10 C 0.697 3.303 11 O -0.638 6.638 12 N -0.734 5.734 13 C 0.147 3.853 14 C -0.098 4.098 15 C -0.013 4.013 16 C -0.529 4.529 17 H 0.038 0.962 18 C 0.004 3.996 19 N -0.950 5.950 20 Si 0.947 3.053 21 H -0.267 1.267 22 H -0.284 1.284 23 H -0.249 1.249 24 C -0.114 4.114 25 C -0.111 4.111 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.411 0.589 36 H 0.411 0.589 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.019 0.981 42 H 0.020 0.980 43 H 0.266 0.734 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.072 10.992 0.017 32.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.097 0.903 4 C -0.151 4.151 5 C -0.150 4.150 6 C -0.162 4.162 7 C 0.059 3.941 8 H 0.080 0.920 9 N -0.385 5.385 10 C 0.396 3.604 11 O -0.520 6.520 12 N -0.390 5.390 13 C 0.023 3.977 14 C -0.136 4.136 15 C -0.051 4.051 16 C -0.568 4.568 17 H 0.057 0.943 18 C -0.193 4.193 19 N -0.590 5.590 20 Si 0.771 3.229 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.172 1.172 24 C -0.152 4.152 25 C -0.149 4.149 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.247 0.753 36 H 0.247 0.753 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.075 0.925 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.099 0.901 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -31.169 10.353 0.907 32.856 hybrid contribution 1.094 -0.289 -0.045 1.132 sum -30.076 10.064 0.862 31.726 Atomic orbital electron populations 1.21869 0.94372 1.01790 1.02126 1.20921 0.95910 0.99948 0.93906 0.90312 1.21429 0.96107 0.99357 0.98214 1.21760 0.95225 1.00696 0.97314 1.21697 0.98705 0.99428 0.96408 1.20599 0.79772 0.99171 0.94530 0.92027 1.45135 1.10544 1.49677 1.33188 1.16187 0.81202 0.80267 0.82697 1.90880 1.80755 1.50952 1.29363 1.45062 1.09059 1.51224 1.33625 1.21111 0.86806 0.93862 0.95946 1.21465 0.92206 1.00643 0.99307 1.19469 0.93376 0.96000 0.96210 1.21459 0.95296 1.27310 1.12690 0.94343 1.25988 0.94822 0.98226 1.00279 1.70056 1.02233 1.44179 1.42560 0.85702 0.77955 0.79427 0.79854 1.19234 1.20991 1.17226 1.20684 0.94387 1.03067 0.97056 1.20487 0.95544 1.00246 0.98610 0.92968 0.92488 0.91862 0.91532 0.93323 0.91147 0.94386 0.94211 0.90010 0.75304 0.75332 0.92863 0.92996 0.91724 0.91651 0.96217 0.96161 0.92519 0.89783 0.90810 0.90089 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.88 71.98 0.64 -0.64 16 2 C -0.09 -0.95 2.39 -11.19 -0.03 -0.97 16 3 H 0.08 0.79 6.99 -2.39 -0.02 0.77 16 4 C -0.11 -1.64 4.89 30.14 0.15 -1.49 16 5 C -0.11 -1.96 5.84 31.23 0.18 -1.77 16 6 C -0.12 -2.23 5.02 30.05 0.15 -2.08 16 7 C 0.16 3.02 2.12 44.59 0.09 3.12 16 8 H 0.06 1.52 6.44 -2.39 -0.02 1.51 16 9 N -0.73 -14.44 4.98 -459.72 -2.29 -16.72 16 10 C 0.70 20.28 8.39 179.05 1.50 21.78 16 11 O -0.64 -24.61 16.01 -3.97 -0.06 -24.67 16 12 N -0.73 -19.71 5.56 -478.54 -2.66 -22.37 16 13 C 0.15 4.87 5.67 86.38 0.49 5.36 16 14 C -0.10 -3.60 5.27 30.59 0.16 -3.44 16 15 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 16 C -0.53 -30.26 9.66 25.60 0.25 -30.01 16 17 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 18 C 0.00 0.22 5.47 84.66 0.46 0.68 16 19 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 20 Si 0.95 44.83 27.47 68.60 1.88 46.72 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16 24 C -0.11 -1.28 4.77 28.74 0.14 -1.14 16 25 C -0.11 -1.18 4.69 28.74 0.13 -1.04 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.48 8.11 -2.39 -0.02 0.46 16 28 H 0.06 0.45 8.13 -2.39 -0.02 0.43 16 29 H 0.07 0.87 7.69 -2.38 -0.02 0.85 16 30 H 0.05 0.84 6.63 -2.39 -0.02 0.82 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.04 0.93 7.80 -2.39 -0.02 0.91 16 34 H 0.08 1.09 6.66 -2.38 -0.02 1.08 16 35 H 0.41 5.33 8.62 -92.71 -0.80 4.53 16 36 H 0.41 8.35 8.49 -92.71 -0.79 7.56 16 37 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.02 0.89 7.58 -2.38 -0.02 0.87 16 42 H 0.02 0.93 7.19 -2.39 -0.02 0.91 16 43 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.08 0.69 7.48 -2.39 -0.02 0.67 16 45 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 46 H 0.08 0.64 7.96 -2.39 -0.02 0.62 16 47 H 0.05 0.69 7.47 -2.39 -0.02 0.67 16 Total: -1.00 -72.56 360.49 0.91 -71.64 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -0.70 Total: 16.79 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 4.44 Total: -12.11 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -4.65 Total: -98.36 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.06 Total: -24.67 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.72 kcal Total: -72.56 0.91 -71.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187975611.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.251 kcal (2) G-P(sol) polarization free energy of solvation -72.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds