Wall clock time and date at job start Tue Mar 31 2020 06:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.52175 * 2 1 4 4 C 1.53115 * 109.57490 * 239.84213 * 2 1 3 5 5 C 1.53038 * 109.28114 * 182.40714 * 4 2 1 6 6 N 1.46848 * 109.51778 * 59.17955 * 5 4 2 7 7 C 1.46906 * 110.99902 * 174.16213 * 6 5 4 8 8 C 1.52994 * 109.47244 * 273.37157 * 7 6 5 9 9 C 1.53005 * 109.47120 * 307.84689 * 8 7 6 10 10 C 1.53007 * 109.47333 * 67.84506 * 8 7 6 11 11 C 1.53002 * 109.47562 * 187.84776 * 8 7 6 12 12 C 1.50694 * 109.47339 * 179.97438 * 11 8 7 13 13 H 1.08002 * 120.00259 * 0.02562 * 12 11 8 14 14 C 1.37882 * 119.99969 * 179.97438 * 12 11 8 15 15 N 1.31516 * 119.99884 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99881 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47138 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46799 * 120.00150 * 16 14 12 19 19 H 1.48499 * 109.46586 * 239.99774 * 16 14 12 20 20 C 1.46852 * 111.19952 * 298.25469 * 6 5 4 21 21 H 1.08993 * 109.45190 * 301.73538 * 20 6 5 22 22 C 1.50701 * 109.46067 * 181.75723 * 20 6 5 23 23 N 1.34777 * 119.99717 * 153.08229 * 22 20 6 24 24 O 1.21280 * 120.00517 * 332.81691 * 22 20 6 25 25 C 1.53041 * 109.51664 * 61.74884 * 20 6 5 26 26 H 1.08998 * 109.47213 * 299.87155 * 1 2 3 27 27 H 1.09003 * 109.47593 * 59.87131 * 1 2 3 28 28 H 1.09005 * 109.47269 * 179.87348 * 1 2 3 29 29 H 1.09005 * 109.50704 * 302.35137 * 4 2 1 30 30 H 1.09003 * 109.50437 * 62.43084 * 4 2 1 31 31 H 1.08994 * 109.46895 * 179.19221 * 5 4 2 32 32 H 1.08993 * 109.46398 * 299.16848 * 5 4 2 33 33 H 1.09006 * 109.46875 * 33.36896 * 7 6 5 34 34 H 1.08996 * 109.47081 * 153.36929 * 7 6 5 35 35 H 1.08996 * 109.46891 * 59.99789 * 9 8 7 36 36 H 1.08999 * 109.47435 * 179.97438 * 9 8 7 37 37 H 1.08995 * 109.46931 * 299.99977 * 9 8 7 38 38 H 1.09000 * 109.47025 * 33.01154 * 10 8 7 39 39 H 1.08999 * 109.47057 * 153.01018 * 10 8 7 40 40 H 1.09002 * 109.46964 * 273.01168 * 10 8 7 41 41 H 1.09006 * 109.46725 * 300.00180 * 11 8 7 42 42 H 1.09004 * 109.46923 * 59.99455 * 11 8 7 43 43 H 0.96995 * 119.99904 * 179.97438 * 15 14 12 44 44 H 0.96996 * 120.00523 * 179.72366 * 23 22 20 45 45 H 0.96997 * 119.99842 * 359.73355 * 23 22 20 46 46 H 1.08996 * 109.50509 * 60.75932 * 25 20 6 47 47 H 1.09000 * 109.49852 * 180.84037 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0430 -0.7248 -1.2474 5 6 3.5721 -0.7735 -1.2105 6 7 4.0115 -1.4766 0.0015 7 6 5.4685 -1.6642 0.0024 8 6 5.8173 -2.9523 -0.7459 9 6 4.9978 -4.1115 -0.1752 10 6 5.4944 -2.7825 -2.2318 11 6 7.3085 -3.2513 -0.5790 12 6 7.6519 -4.5204 -1.3155 13 1 6.8836 -5.0596 -1.8496 14 6 8.9474 -4.9926 -1.3084 15 7 9.8834 -4.3352 -0.6593 16 14 9.3731 -6.5654 -2.2220 17 1 8.1515 -7.1087 -2.8682 18 1 10.3939 -6.2737 -3.2604 19 1 9.9127 -7.5635 -1.2640 20 6 3.5709 -0.7730 1.2129 21 1 3.9666 0.2425 1.2070 22 6 4.0782 -1.5027 2.4299 23 7 4.2907 -0.8306 3.5787 24 8 4.2907 -2.6956 2.3772 25 6 2.0416 -0.7244 1.2482 26 1 -0.3633 0.5118 0.8911 27 1 -0.3634 0.5158 -0.8888 28 1 -0.3634 -1.0277 -0.0023 29 1 1.6469 -1.7401 -1.2671 30 1 1.7169 -0.1896 -2.1392 31 1 3.9401 -1.3015 -2.0901 32 1 3.9678 0.2420 -1.2047 33 1 5.9442 -0.8169 -0.4916 34 1 5.8254 -1.7329 1.0299 35 1 3.9355 -3.8986 -0.2940 36 1 5.2460 -5.0292 -0.7085 37 1 5.2279 -4.2326 0.8833 38 1 5.6628 -1.7460 -2.5240 39 1 6.1388 -3.4352 -2.8206 40 1 4.4515 -3.0452 -2.4093 41 1 7.8924 -2.4254 -0.9856 42 1 7.5386 -3.3723 0.4795 43 1 10.7946 -4.6676 -0.6540 44 1 4.6135 -1.3009 4.3632 45 1 4.1208 0.1235 3.6209 46 1 1.6456 -1.7396 1.2678 47 1 1.7152 -0.1891 2.1398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190161406.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:47 Heat of formation + Delta-G solvation = -54.614984 kcal Electronic energy + Delta-G solvation = -24248.938179 eV Core-core repulsion = 21044.735780 eV Total energy + Delta-G solvation = -3204.202399 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.33606 -38.03341 -36.62035 -33.75250 -33.53321 -32.03000 -30.95900 -28.48783 -26.80051 -26.10383 -25.00642 -24.21922 -22.68214 -21.95532 -20.18955 -19.62771 -17.79362 -17.23973 -16.63794 -16.07119 -15.48953 -15.03282 -14.70347 -14.41474 -14.29249 -14.13131 -13.52158 -13.32471 -12.97278 -12.92767 -12.60011 -12.23537 -12.02307 -11.90410 -11.85246 -11.55029 -11.33270 -10.95812 -10.84562 -10.73681 -10.61075 -10.54477 -10.31019 -10.15766 -10.09785 -9.82442 -9.56645 -9.49240 -9.31605 -8.80527 -8.72422 -8.20940 -7.88615 -5.86018 -3.84605 2.81511 3.39471 3.46595 3.47090 3.51564 4.15540 4.58399 4.65924 4.70747 4.72720 5.07160 5.14334 5.18538 5.40176 5.49832 5.51935 5.52916 5.56522 5.62491 5.73207 5.83899 5.92713 6.00312 6.02690 6.10583 6.17357 6.22358 6.33169 6.39892 6.54103 6.67710 6.84427 6.98643 6.99390 7.16698 7.23015 7.41859 7.48333 7.49918 7.63420 7.65511 7.85544 8.03663 8.15849 8.47705 8.61950 9.21135 9.77142 11.25985 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023822 B = 0.004649 C = 0.004177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.098467 B = 6021.278960 C = 6700.985823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.112 4.112 5 C 0.043 3.957 6 N -0.506 5.506 7 C 0.067 3.933 8 C -0.046 4.046 9 C -0.105 4.105 10 C -0.134 4.134 11 C 0.034 3.966 12 C -0.500 4.500 13 H 0.060 0.940 14 C 0.053 3.947 15 N -0.900 5.900 16 Si 0.886 3.114 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.286 1.286 20 C 0.070 3.930 21 H 0.050 0.950 22 C 0.514 3.486 23 N -0.864 5.864 24 O -0.500 6.500 25 C -0.098 4.098 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.026 0.974 33 H 0.028 0.972 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.032 0.968 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.009 0.991 42 H 0.013 0.987 43 H 0.257 0.743 44 H 0.400 0.600 45 H 0.396 0.604 46 H 0.079 0.921 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.442 13.050 4.339 22.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.084 4.084 6 N -0.231 5.231 7 C -0.060 4.060 8 C -0.047 4.047 9 C -0.163 4.163 10 C -0.191 4.191 11 C -0.003 4.003 12 C -0.538 4.538 13 H 0.078 0.922 14 C -0.147 4.147 15 N -0.540 5.540 16 Si 0.715 3.285 17 H -0.197 1.197 18 H -0.213 1.213 19 H -0.212 1.212 20 C -0.043 4.043 21 H 0.068 0.932 22 C 0.297 3.703 23 N -0.429 5.429 24 O -0.372 6.372 25 C -0.137 4.137 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.027 0.973 42 H 0.031 0.969 43 H 0.066 0.934 44 H 0.231 0.769 45 H 0.223 0.777 46 H 0.097 0.903 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.398 11.775 4.134 21.411 hybrid contribution 0.957 0.412 0.022 1.042 sum -16.441 12.187 4.156 20.883 Atomic orbital electron populations 1.21799 0.95034 1.01998 1.01375 1.21159 0.95561 0.99042 0.95180 0.91602 1.21679 0.95321 1.01284 0.96740 1.22502 0.95131 0.96350 0.94427 1.61773 1.14627 1.47419 0.99304 1.22420 0.84442 0.98190 1.00973 1.20489 0.98448 0.92639 0.93132 1.21522 0.97712 0.96746 1.00289 1.22033 0.99771 0.99736 0.97554 1.19132 0.88137 0.96229 0.96831 1.21293 0.93632 1.08120 1.30775 0.92185 1.25015 0.96746 0.97047 0.95884 1.69986 1.01528 1.39334 1.43149 0.86621 0.78319 0.83969 0.79626 1.19745 1.21294 1.21225 1.21591 0.96816 0.95396 0.90464 0.93205 1.20506 0.77269 0.88143 0.84394 1.43941 1.71905 1.13041 1.14035 1.90831 1.48408 1.14492 1.83444 1.21573 0.92193 1.02173 0.97716 0.92937 0.92703 0.92458 0.90830 0.91770 0.88351 0.95598 0.95370 0.91685 0.93911 0.93893 0.93238 0.94910 0.91259 0.94191 0.97288 0.96879 0.93380 0.76936 0.77689 0.90258 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.20 37.16 0.34 -0.78 16 2 C -0.09 -0.83 2.79 -90.50 -0.25 -1.09 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.11 -1.20 5.38 -26.65 -0.14 -1.34 16 5 C 0.04 0.57 5.02 -3.83 -0.02 0.55 16 6 N -0.51 -7.79 3.01 -228.08 -0.69 -8.47 16 7 C 0.07 1.25 3.62 -3.82 -0.01 1.24 16 8 C -0.05 -1.01 0.61 -154.50 -0.09 -1.10 16 9 C -0.11 -2.35 7.28 37.16 0.27 -2.08 16 10 C -0.13 -2.66 7.14 37.16 0.27 -2.39 16 11 C 0.03 0.92 4.03 -27.88 -0.11 0.81 16 12 C -0.50 -14.35 7.27 -34.44 -0.25 -14.60 16 13 H 0.06 1.69 5.99 -52.49 -0.31 1.38 16 14 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -27.84 13.29 55.43 0.74 -27.10 16 16 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 C 0.07 0.88 2.23 -68.87 -0.15 0.73 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 22 C 0.51 7.33 5.80 -10.98 -0.06 7.27 16 23 N -0.86 -8.40 8.87 31.22 0.28 -8.12 16 24 O -0.50 -9.61 14.40 5.56 0.08 -9.53 16 25 C -0.10 -1.02 4.64 -26.65 -0.12 -1.14 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 1.41 4.22 -51.93 -0.22 1.19 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.03 0.52 7.62 -51.93 -0.40 0.12 16 34 H 0.06 1.32 5.74 -51.93 -0.30 1.02 16 35 H 0.04 0.88 7.38 -51.93 -0.38 0.50 16 36 H 0.04 1.00 6.62 -51.93 -0.34 0.66 16 37 H 0.05 1.19 6.74 -51.93 -0.35 0.84 16 38 H 0.03 0.59 6.76 -51.93 -0.35 0.24 16 39 H 0.07 1.53 6.26 -51.93 -0.32 1.21 16 40 H 0.04 0.72 6.99 -51.93 -0.36 0.35 16 41 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 44 H 0.40 3.63 8.93 -40.82 -0.36 3.27 16 45 H 0.40 2.51 8.83 -40.82 -0.36 2.15 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 348.99 15.07 5.26 5.26 Total: -1.00 -33.58 348.99 -8.08 -41.66 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -8.28 Total: 1.40 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -0.45 Total: -12.47 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.33 Total: -43.69 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.58 -8.08 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190161406.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.955 kcal (2) G-P(sol) polarization free energy of solvation -33.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds