Wall clock time and date at job start Tue Mar 31 2020 06:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.52300 * 2 1 4 4 C 1.53120 * 109.52430 * 120.19535 * 2 1 3 5 5 C 1.53039 * 109.27631 * 177.55635 * 4 2 1 6 6 N 1.46850 * 109.52833 * 300.82194 * 5 4 2 7 7 C 1.46900 * 111.00094 * 185.84122 * 6 5 4 8 8 C 1.52993 * 109.46757 * 153.37234 * 7 6 5 9 9 C 1.52998 * 109.47419 * 55.10992 * 8 7 6 10 10 C 1.53005 * 109.47327 * 295.10368 * 8 7 6 11 11 C 1.53005 * 109.47027 * 175.10902 * 8 7 6 12 12 C 1.50695 * 109.47488 * 180.02562 * 11 8 7 13 13 H 1.08001 * 119.99844 * 359.97438 * 12 11 8 14 14 C 1.37877 * 120.00454 * 179.97438 * 12 11 8 15 15 N 1.31515 * 119.99757 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00421 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47478 * 179.97438 * 16 14 12 18 18 H 1.48506 * 109.47248 * 59.99613 * 16 14 12 19 19 H 1.48503 * 109.46798 * 299.99991 * 16 14 12 20 20 C 1.46846 * 111.19378 * 61.74265 * 6 5 4 21 21 H 1.08999 * 109.45919 * 178.25709 * 20 6 5 22 22 C 1.50694 * 109.46325 * 58.27810 * 20 6 5 23 23 N 1.34784 * 119.99697 * 180.33362 * 22 20 6 24 24 O 1.21277 * 120.00073 * 0.33075 * 22 20 6 25 25 C 1.53041 * 109.52378 * 298.25807 * 20 6 5 26 26 H 1.08997 * 109.47608 * 180.12076 * 1 2 3 27 27 H 1.09009 * 109.47049 * 300.12242 * 1 2 3 28 28 H 1.09005 * 109.47293 * 60.12015 * 1 2 3 29 29 H 1.08998 * 109.50220 * 297.49705 * 4 2 1 30 30 H 1.09000 * 109.50144 * 57.62276 * 4 2 1 31 31 H 1.08998 * 109.46047 * 180.80315 * 5 4 2 32 32 H 1.09004 * 109.46243 * 60.84120 * 5 4 2 33 33 H 1.09001 * 109.46817 * 33.37124 * 7 6 5 34 34 H 1.08997 * 109.46621 * 273.37175 * 7 6 5 35 35 H 1.09003 * 109.47547 * 171.01549 * 9 8 7 36 36 H 1.09008 * 109.46863 * 291.01239 * 9 8 7 37 37 H 1.08999 * 109.47274 * 51.00854 * 9 8 7 38 38 H 1.08992 * 109.47226 * 301.37913 * 10 8 7 39 39 H 1.09005 * 109.46496 * 61.37852 * 10 8 7 40 40 H 1.08996 * 109.47114 * 181.37604 * 10 8 7 41 41 H 1.08993 * 109.47205 * 59.99740 * 11 8 7 42 42 H 1.09001 * 109.46632 * 299.99744 * 11 8 7 43 43 H 0.97007 * 119.99943 * 0.02562 * 15 14 12 44 44 H 0.96994 * 120.00229 * 0.02562 * 23 22 20 45 45 H 0.97002 * 119.99550 * 179.97438 * 23 22 20 46 46 H 1.08999 * 109.50066 * 179.12512 * 25 20 6 47 47 H 1.09001 * 109.50390 * 299.24312 * 25 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7258 1.2473 5 6 3.5708 -0.7760 1.2110 6 7 4.0102 -1.4789 -0.0011 7 6 5.4670 -1.6678 -0.0012 8 6 5.8216 -2.8977 -0.8392 9 6 5.2279 -2.7481 -2.2413 10 6 5.2488 -4.1508 -0.1738 11 6 7.3431 -3.0244 -0.9405 12 6 7.6925 -4.2355 -1.7664 13 1 6.9079 -4.8533 -2.1776 14 6 9.0137 -4.5549 -1.9972 15 7 9.9692 -3.8022 -1.4969 16 14 9.4468 -6.0564 -3.0204 17 1 10.9234 -6.1787 -3.1198 18 1 8.8699 -5.9115 -4.3811 19 1 8.8914 -7.2727 -2.3741 20 6 3.5707 -0.7743 -1.2122 21 1 3.9375 -1.3021 -2.0926 22 6 4.1191 0.6293 -1.2035 23 7 3.8382 1.4689 -2.2197 24 8 4.8132 1.0034 -0.2820 25 6 2.0416 -0.7242 -1.2483 26 1 -0.3634 -1.0276 0.0022 27 1 -0.3633 0.5158 0.8890 28 1 -0.3634 0.5120 -0.8911 29 1 1.7162 -0.1903 2.1392 30 1 1.6447 -1.7408 1.2663 31 1 3.9378 -1.3047 2.0907 32 1 3.9674 0.2393 1.2060 33 1 5.8147 -1.8124 1.0217 34 1 5.9475 -0.7870 -0.4272 35 1 5.6102 -3.5408 -2.8844 36 1 4.1415 -2.8180 -2.1852 37 1 5.5087 -1.7788 -2.6533 38 1 5.6531 -4.2440 0.8341 39 1 4.1628 -4.0712 -0.1237 40 1 5.5223 -5.0295 -0.7577 41 1 7.7661 -3.1310 0.0583 42 1 7.7512 -2.1318 -1.4146 43 1 9.7443 -3.0226 -0.9652 44 1 3.2827 1.1698 -2.9565 45 1 4.1909 2.3725 -2.2139 46 1 1.7161 -0.1876 -2.1395 47 1 1.6446 -1.7391 -1.2686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190161423.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:49 Heat of formation + Delta-G solvation = -49.376096 kcal Electronic energy + Delta-G solvation = -24482.109865 eV Core-core repulsion = 21278.134642 eV Total energy + Delta-G solvation = -3203.975223 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.91258 -37.68894 -36.75594 -34.17845 -33.56628 -32.15437 -30.93623 -28.43359 -26.68775 -26.36684 -25.06287 -23.91565 -22.77151 -21.96141 -20.96832 -19.39519 -18.26104 -17.19148 -16.64581 -16.33310 -15.50810 -15.20048 -14.74050 -14.55341 -14.29625 -13.99412 -13.67706 -13.38833 -13.18504 -12.97765 -12.61367 -12.39180 -12.17263 -12.06558 -11.61498 -11.42998 -11.29032 -11.02246 -10.93886 -10.84645 -10.75274 -10.52771 -10.45280 -10.25923 -10.09033 -9.99846 -9.82226 -9.69814 -9.50941 -9.11582 -8.34857 -8.22668 -7.77588 -6.24120 -3.91609 2.66503 3.47993 3.50207 3.56180 3.68567 4.11842 4.62261 4.63595 4.69629 4.73652 4.96459 5.16560 5.37617 5.43902 5.50571 5.53358 5.56225 5.61186 5.69547 5.73459 5.81712 5.89440 5.96746 6.01277 6.01565 6.15121 6.15928 6.32195 6.36833 6.44962 6.48098 6.65314 6.71989 6.79102 6.81498 7.11410 7.17769 7.23716 7.27696 7.42800 7.45643 7.54875 7.68689 8.27821 8.35978 8.58349 9.00500 9.79225 11.15652 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027055 B = 0.004464 C = 0.004315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.697729 B = 6270.548864 C = 6488.016848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 H 0.062 0.938 4 C -0.109 4.109 5 C 0.029 3.971 6 N -0.498 5.498 7 C 0.060 3.940 8 C -0.046 4.046 9 C -0.134 4.134 10 C -0.116 4.116 11 C 0.020 3.980 12 C -0.586 4.586 13 H 0.053 0.947 14 C 0.011 3.989 15 N -0.918 5.918 16 Si 1.065 2.935 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.034 3.966 21 H 0.140 0.860 22 C 0.494 3.506 23 N -0.859 5.859 24 O -0.539 6.539 25 C -0.100 4.100 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.034 0.966 38 H 0.035 0.965 39 H 0.043 0.957 40 H 0.056 0.944 41 H 0.004 0.996 42 H 0.001 0.999 43 H 0.268 0.732 44 H 0.399 0.601 45 H 0.395 0.605 46 H 0.065 0.935 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.709 8.723 -0.325 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.081 0.919 4 C -0.147 4.147 5 C -0.098 4.098 6 N -0.220 5.220 7 C -0.067 4.067 8 C -0.046 4.046 9 C -0.190 4.190 10 C -0.173 4.173 11 C -0.017 4.017 12 C -0.625 4.625 13 H 0.071 0.929 14 C -0.192 4.192 15 N -0.555 5.555 16 Si 0.894 3.106 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.215 1.215 20 C -0.078 4.078 21 H 0.157 0.843 22 C 0.278 3.722 23 N -0.423 5.423 24 O -0.416 6.416 25 C -0.138 4.138 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.023 0.977 42 H 0.020 0.980 43 H 0.078 0.922 44 H 0.227 0.773 45 H 0.225 0.775 46 H 0.084 0.916 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.223 7.419 -0.219 19.677 hybrid contribution -0.933 2.081 0.271 2.296 sum -19.156 9.500 0.051 21.382 Atomic orbital electron populations 1.21797 0.95084 1.01887 1.01341 1.21205 0.95515 0.99145 0.95577 0.91923 1.21636 0.95650 1.00715 0.96673 1.22472 0.94723 0.99905 0.92732 1.62285 1.14483 1.45242 1.00006 1.22420 0.85264 0.98350 1.00685 1.20440 0.97710 0.93072 0.93426 1.22037 0.98392 1.00739 0.97869 1.21608 0.98627 0.97775 0.99286 1.19239 0.89379 0.96852 0.96252 1.22017 0.94133 1.11564 1.34739 0.92899 1.25773 0.92946 1.02402 0.98074 1.70765 1.34941 1.16521 1.33228 0.83598 0.76063 0.75171 0.75757 1.20984 1.21621 1.21542 1.22749 0.96519 0.89385 0.99155 0.84318 1.22258 0.79464 0.88991 0.81439 1.44109 1.55956 1.16846 1.25347 1.90649 1.38266 1.77775 1.34933 1.21636 0.92486 1.02187 0.97487 0.92433 0.92872 0.92944 0.92116 0.91275 0.91253 0.91268 0.91844 0.93424 0.91400 0.93293 0.94719 0.94541 0.93772 0.92519 0.97734 0.98027 0.92174 0.77313 0.77530 0.91649 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.20 37.15 0.34 -0.82 16 2 C -0.10 -0.97 2.54 -90.50 -0.23 -1.20 16 3 H 0.06 0.71 7.32 -51.93 -0.38 0.33 16 4 C -0.11 -1.25 5.38 -26.65 -0.14 -1.39 16 5 C 0.03 0.42 5.05 -3.83 -0.02 0.41 16 6 N -0.50 -7.68 3.82 -228.08 -0.87 -8.55 16 7 C 0.06 1.14 3.75 -3.83 -0.01 1.12 16 8 C -0.05 -0.95 0.60 -154.51 -0.09 -1.04 16 9 C -0.13 -2.50 6.57 37.16 0.24 -2.25 16 10 C -0.12 -2.30 8.11 37.16 0.30 -2.00 16 11 C 0.02 0.52 3.35 -27.88 -0.09 0.43 16 12 C -0.59 -16.37 7.51 -34.44 -0.26 -16.63 16 13 H 0.05 1.44 5.73 -52.49 -0.30 1.14 16 14 C 0.01 0.32 5.46 -17.82 -0.10 0.23 16 15 N -0.92 -28.67 13.65 55.43 0.76 -27.91 16 16 Si 1.07 25.56 29.90 -169.99 -5.08 20.48 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.03 0.45 2.07 -68.88 -0.14 0.31 16 21 H 0.14 1.89 3.46 -51.93 -0.18 1.71 16 22 C 0.49 6.88 5.42 -10.99 -0.06 6.82 16 23 N -0.86 -8.27 8.76 31.22 0.27 -7.99 16 24 O -0.54 -9.68 12.72 5.56 0.07 -9.61 16 25 C -0.10 -1.00 4.81 -26.65 -0.13 -1.13 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 1.02 7.90 -51.93 -0.41 0.61 16 32 H 0.07 1.14 5.19 -51.93 -0.27 0.87 16 33 H 0.06 1.25 7.68 -51.93 -0.40 0.85 16 34 H 0.05 1.00 5.86 -51.93 -0.30 0.70 16 35 H 0.07 1.40 6.37 -51.93 -0.33 1.07 16 36 H 0.05 0.78 6.15 -51.92 -0.32 0.46 16 37 H 0.03 0.63 7.28 -51.93 -0.38 0.25 16 38 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.78 7.79 -51.93 -0.40 0.38 16 40 H 0.06 1.21 6.58 -51.93 -0.34 0.86 16 41 H 0.00 0.12 8.01 -51.93 -0.42 -0.29 16 42 H 0.00 0.04 8.01 -51.93 -0.42 -0.37 16 43 H 0.27 8.43 7.22 -40.82 -0.29 8.13 16 44 H 0.40 2.63 8.21 -40.82 -0.34 2.29 16 45 H 0.39 3.45 8.93 -40.82 -0.36 3.09 16 46 H 0.06 0.50 7.52 -51.93 -0.39 0.11 16 47 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 342.18 15.07 5.16 5.16 Total: -1.00 -32.94 342.18 -8.08 -41.02 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -7.99 Total: 4.55 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -0.39 Total: -17.14 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.16 Total: -44.46 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.07 Total: -9.61 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.48 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.94 -8.08 -41.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190161423.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.356 kcal (2) G-P(sol) polarization free energy of solvation -32.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds