Wall clock time and date at job start Tue Mar 31 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.52448 * 2 1 4 4 C 1.53124 * 109.57095 * 120.15603 * 2 1 3 5 5 C 1.53036 * 109.27530 * 177.59438 * 4 2 1 6 6 N 1.46850 * 109.52402 * 300.81379 * 5 4 2 7 7 C 1.46892 * 111.00171 * 185.84012 * 6 5 4 8 8 C 1.52998 * 109.47121 * 45.79498 * 7 6 5 9 9 C 1.50699 * 109.47238 * 179.97438 * 8 7 6 10 10 O 1.21275 * 120.00067 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00130 * 179.97438 * 9 8 7 12 12 C 1.46503 * 120.00054 * 0.02562 * 11 9 8 13 13 C 1.46500 * 120.00124 * 179.97438 * 11 9 8 14 14 C 1.50706 * 109.46953 * 269.99834 * 13 11 9 15 15 H 1.07999 * 120.00193 * 0.02562 * 14 13 11 16 16 C 1.37879 * 119.99398 * 179.97438 * 14 13 11 17 17 N 1.31514 * 119.99350 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00608 * 0.02562 * 16 14 13 19 19 H 1.48493 * 109.47326 * 270.00340 * 18 16 14 20 20 H 1.48506 * 109.46545 * 30.00090 * 18 16 14 21 21 H 1.48498 * 109.47210 * 149.99801 * 18 16 14 22 22 C 1.46853 * 111.19254 * 61.74402 * 6 5 4 23 23 C 1.53035 * 109.52762 * 298.25886 * 22 6 5 24 24 H 1.08996 * 109.50600 * 179.16153 * 23 22 6 25 25 C 1.53003 * 109.49975 * 299.24338 * 23 22 6 26 26 H 1.09005 * 109.47415 * 180.12932 * 1 2 3 27 27 H 1.08995 * 109.47342 * 300.12887 * 1 2 3 28 28 H 1.09001 * 109.46816 * 60.13538 * 1 2 3 29 29 H 1.08999 * 109.49977 * 297.52947 * 4 2 1 30 30 H 1.08995 * 109.50597 * 57.64978 * 4 2 1 31 31 H 1.09003 * 109.46263 * 180.80242 * 5 4 2 32 32 H 1.09003 * 109.46642 * 60.83281 * 5 4 2 33 33 H 1.08999 * 109.47615 * 285.79230 * 7 6 5 34 34 H 1.09002 * 109.47229 * 165.78982 * 7 6 5 35 35 H 1.09005 * 109.47040 * 59.99832 * 8 7 6 36 36 H 1.08998 * 109.47317 * 300.00100 * 8 7 6 37 37 H 1.08998 * 109.46989 * 269.99943 * 12 11 9 38 38 H 1.09001 * 109.46889 * 29.99702 * 12 11 9 39 39 H 1.09002 * 109.47448 * 149.99285 * 12 11 9 40 40 H 1.09000 * 109.47175 * 150.00263 * 13 11 9 41 41 H 1.08993 * 109.47452 * 30.00053 * 13 11 9 42 42 H 0.97005 * 119.99661 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.45958 * 58.27606 * 22 6 5 44 44 H 1.09000 * 109.45792 * 178.24255 * 22 6 5 45 45 H 1.08997 * 109.47645 * 59.99890 * 25 23 22 46 46 H 1.08999 * 109.46918 * 180.02562 * 25 23 22 47 47 H 1.09005 * 109.46914 * 299.99360 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0429 -0.7248 1.2475 5 6 3.5721 -0.7735 1.2106 6 7 4.0116 -1.4767 -0.0013 7 6 5.4685 -1.6642 -0.0020 8 6 5.9184 -2.1691 1.3704 9 6 7.4130 -2.3621 1.3694 10 8 8.0550 -2.1202 0.3694 11 7 8.0361 -2.8036 2.4799 12 6 7.2605 -3.0965 3.6878 13 6 9.4890 -2.9918 2.4789 14 6 9.8132 -4.3975 2.0430 15 1 9.0167 -5.0821 1.7914 16 6 11.1267 -4.8092 1.9643 17 7 11.4096 -6.0357 1.5834 18 14 12.5044 -3.6249 2.3986 19 1 12.9232 -2.8848 1.1812 20 1 12.0251 -2.6622 3.4227 21 1 13.6601 -4.3860 2.9373 22 6 3.5709 -0.7732 -1.2127 23 6 2.0417 -0.7244 -1.2481 24 1 1.7152 -0.1892 -2.1398 25 6 1.4857 -2.1496 -1.2755 26 1 -0.3634 -1.0277 0.0023 27 1 -0.3634 0.5158 0.8888 28 1 -0.3633 0.5117 -0.8912 29 1 1.7173 -0.1891 2.1392 30 1 1.6468 -1.7400 1.2672 31 1 3.9400 -1.3014 2.0904 32 1 3.9678 0.2422 1.2048 33 1 5.9571 -0.7141 -0.2177 34 1 5.7405 -2.3940 -0.7647 35 1 5.4298 -3.1194 1.5860 36 1 5.6464 -1.4395 2.1330 37 1 7.1932 -2.1991 4.3028 38 1 6.2584 -3.4201 3.4065 39 1 7.7528 -3.8881 4.2527 40 1 9.8778 -2.8241 3.4833 41 1 9.9467 -2.2828 1.7891 42 1 12.3337 -6.3253 1.5276 43 1 3.9666 0.2424 -1.2070 44 1 3.9379 -1.3010 -2.0929 45 1 1.8113 -2.6839 -0.3830 46 1 0.3966 -2.1143 -1.3012 47 1 1.8531 -2.6659 -2.1624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245540498.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:01 Heat of formation + Delta-G solvation = -42.617093 kcal Electronic energy + Delta-G solvation = -23001.569726 eV Core-core repulsion = 19797.887595 eV Total energy + Delta-G solvation = -3203.682131 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.96210 -38.93373 -35.62900 -34.84595 -32.56838 -31.97149 -30.96238 -28.81077 -28.03269 -26.35566 -25.75708 -23.90598 -22.88543 -22.18049 -20.83247 -18.65578 -18.32138 -16.95423 -16.83578 -15.73623 -15.46356 -15.44503 -14.93414 -14.74504 -14.54882 -14.28227 -13.93311 -13.52255 -13.21551 -12.72516 -12.64414 -12.47090 -12.30444 -12.18464 -12.14111 -12.00117 -11.97315 -11.55339 -11.51018 -11.24128 -11.15151 -10.98572 -10.84894 -10.58471 -10.51143 -10.31462 -10.17821 -10.13679 -9.53245 -8.98327 -8.58010 -8.29162 -7.68978 -6.07697 -4.06345 3.29670 3.35480 3.36562 3.37386 3.66359 4.07893 4.40419 4.49801 4.56710 4.60847 4.95383 5.08608 5.10397 5.17454 5.23426 5.25618 5.28335 5.31435 5.40776 5.43885 5.50062 5.56360 5.65128 5.65917 5.71239 5.78804 5.79394 5.82943 5.84870 5.89196 6.01375 6.09505 6.11911 6.14466 6.18271 6.23670 6.42009 6.70551 6.94672 7.05818 7.08541 7.34947 7.62170 8.26223 8.48315 8.94135 9.00420 9.52621 11.05786 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037289 B = 0.003135 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.709067 B = 8930.305166 C = 9122.817636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.063 0.937 4 C -0.112 4.112 5 C 0.045 3.955 6 N -0.535 5.535 7 C 0.073 3.927 8 C -0.140 4.140 9 C 0.507 3.493 10 O -0.543 6.543 11 N -0.599 5.599 12 C 0.084 3.916 13 C 0.215 3.785 14 C -0.528 4.528 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.877 3.123 19 H -0.274 1.274 20 H -0.266 1.266 21 H -0.285 1.285 22 C 0.060 3.940 23 C -0.083 4.083 24 H 0.069 0.931 25 C -0.141 4.141 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.030 0.970 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.075 0.925 40 H 0.029 0.971 41 H 0.036 0.964 42 H 0.264 0.736 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.048 0.952 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.700 12.180 0.433 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.082 0.918 4 C -0.150 4.150 5 C -0.082 4.082 6 N -0.260 5.260 7 C -0.055 4.055 8 C -0.181 4.181 9 C 0.293 3.707 10 O -0.421 6.421 11 N -0.331 5.331 12 C -0.060 4.060 13 C 0.094 3.906 14 C -0.567 4.567 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.191 1.191 21 H -0.211 1.211 22 C -0.068 4.068 23 C -0.102 4.102 24 H 0.087 0.913 25 C -0.199 4.199 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -21.399 11.714 -0.113 24.395 hybrid contribution 1.240 1.207 0.279 1.753 sum -20.158 12.921 0.166 23.944 Atomic orbital electron populations 1.21870 0.95273 1.02039 1.01274 1.21195 0.95521 0.98906 0.95229 0.91816 1.21689 0.94843 1.01414 0.97069 1.22241 0.95561 0.96599 0.93845 1.61995 1.12692 1.49367 1.01906 1.21820 0.85563 1.00899 0.97182 1.21800 0.94011 1.03468 0.98796 1.20329 0.89282 0.77768 0.83272 1.90664 1.67593 1.51546 1.32324 1.47844 1.09582 1.64263 1.11422 1.21662 0.96032 1.00487 0.87861 1.19657 0.75768 0.98095 0.97062 1.21340 0.93726 0.95873 1.45727 0.90761 1.24869 0.98525 0.95097 0.94593 1.69903 1.19257 1.16983 1.47499 0.86836 0.82065 0.81336 0.79359 1.19920 1.19099 1.21065 1.22098 0.95082 0.96406 0.93200 1.21179 0.94335 0.97246 0.97393 0.91293 1.21814 0.99471 0.95755 1.02812 0.92143 0.92985 0.92954 0.91872 0.90704 0.90032 0.95163 0.94168 0.89630 0.88458 0.89521 0.93770 0.92018 0.90595 0.95296 0.94620 0.92572 0.95076 0.90598 0.91020 0.93313 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.79 37.16 0.33 -0.68 16 2 C -0.09 -0.73 2.56 -90.50 -0.23 -0.96 16 3 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -0.95 5.03 -26.65 -0.13 -1.08 16 5 C 0.05 0.46 4.85 -3.83 -0.02 0.44 16 6 N -0.53 -6.24 4.09 -234.67 -0.96 -7.20 16 7 C 0.07 1.04 4.56 -3.83 -0.02 1.03 16 8 C -0.14 -2.04 3.50 -27.88 -0.10 -2.13 16 9 C 0.51 10.35 7.67 -10.99 -0.08 10.26 16 10 O -0.54 -13.46 15.56 5.56 0.09 -13.37 16 11 N -0.60 -12.45 2.86 -182.95 -0.52 -12.97 16 12 C 0.08 1.28 10.24 59.85 0.61 1.89 16 13 C 0.21 5.34 4.23 -5.19 -0.02 5.32 16 14 C -0.53 -15.39 9.94 -34.44 -0.34 -15.74 16 15 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 16 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 17 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 18 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 19 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.06 0.64 4.86 -3.83 -0.02 0.62 16 23 C -0.08 -0.73 2.77 -90.54 -0.25 -0.98 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 C -0.14 -1.26 8.33 37.16 0.31 -0.95 16 26 H 0.06 0.41 6.40 -51.93 -0.33 0.08 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.66 6.58 -51.93 -0.34 0.32 16 31 H 0.08 0.79 5.81 -51.93 -0.30 0.48 16 32 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.04 0.62 8.04 -51.93 -0.42 0.20 16 34 H 0.09 1.38 8.10 -51.93 -0.42 0.96 16 35 H 0.10 1.33 7.40 -51.93 -0.38 0.94 16 36 H 0.09 1.05 6.17 -51.93 -0.32 0.73 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.78 6.44 -51.93 -0.33 0.44 16 39 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 40 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 41 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 45 H 0.07 0.72 6.01 -51.93 -0.31 0.41 16 46 H 0.05 0.38 6.41 -51.93 -0.33 0.05 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 354.67 15.07 5.34 5.34 Total: -1.00 -33.49 354.67 -8.47 -41.96 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -8.46 Total: -2.72 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -0.07 Total: -0.96 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: -0.71 Total: -47.39 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.37 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.49 -8.47 -41.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245540498.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.657 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds