Wall clock time and date at job start Tue Mar 31 2020 06:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47227 * 2 1 4 4 C 1.53000 * 109.47071 * 240.00060 * 2 1 3 5 5 C 1.53009 * 109.46847 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47072 * 60.00163 * 5 4 2 7 7 C 1.52997 * 109.46928 * 299.99945 * 6 5 4 8 8 H 1.09000 * 109.47403 * 300.00166 * 7 6 5 9 9 N 1.46505 * 109.47170 * 180.02562 * 7 6 5 10 10 C 1.34769 * 120.00177 * 84.99758 * 9 7 6 11 11 O 1.21592 * 120.00065 * 359.97438 * 10 9 7 12 12 N 1.34777 * 120.00123 * 180.02562 * 10 9 7 13 13 C 1.46498 * 120.00346 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47311 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46872 * 180.02562 * 14 13 12 16 16 C 1.50708 * 109.46973 * 180.02562 * 15 14 13 17 17 H 1.07991 * 119.99789 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00008 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00089 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99938 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 269.99556 * 20 18 16 22 22 H 1.48503 * 109.47261 * 149.99737 * 20 18 16 23 23 H 1.48500 * 109.47454 * 29.99730 * 20 18 16 24 24 C 1.52999 * 109.46912 * 120.00183 * 2 1 3 25 25 H 1.08997 * 109.47324 * 59.99876 * 24 2 1 26 26 C 1.53000 * 109.47152 * 299.99828 * 24 2 1 27 27 H 1.09008 * 109.46779 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47424 * 299.99775 * 1 2 3 29 29 H 1.09001 * 109.46784 * 60.00249 * 1 2 3 30 30 H 1.09000 * 109.47059 * 60.00051 * 4 2 1 31 31 H 1.09000 * 109.47532 * 299.99887 * 4 2 1 32 32 H 1.09000 * 109.46915 * 300.00207 * 5 4 2 33 33 H 1.08997 * 109.46618 * 179.97438 * 5 4 2 34 34 H 1.08999 * 109.47150 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.47324 * 59.99699 * 6 5 4 36 36 H 0.97003 * 119.99554 * 264.99812 * 9 7 6 37 37 H 0.97000 * 120.00165 * 359.97438 * 12 10 9 38 38 H 1.09007 * 109.47173 * 59.99932 * 13 12 10 39 39 H 1.09000 * 109.47353 * 300.00047 * 13 12 10 40 40 H 1.08996 * 109.46845 * 60.00515 * 14 13 12 41 41 H 1.08996 * 109.47077 * 299.99685 * 14 13 12 42 42 H 1.08994 * 109.48028 * 60.00123 * 15 14 13 43 43 H 1.09000 * 109.47206 * 299.99977 * 15 14 13 44 44 H 0.96997 * 119.99848 * 180.02562 * 19 18 16 45 45 H 1.09000 * 109.47532 * 300.00382 * 26 24 2 46 46 H 1.09005 * 109.46930 * 60.00281 * 26 24 2 47 47 H 1.09000 * 109.47059 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5701 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0003 7 6 3.5695 -0.7222 1.2495 8 1 3.9331 0.3053 1.2498 9 7 4.0577 -1.4128 2.4458 10 6 5.2796 -1.1271 2.9373 11 8 5.9770 -0.2964 2.3877 12 7 5.7290 -1.7628 4.0375 13 6 7.0574 -1.4526 4.5715 14 6 7.3198 -2.3062 5.8139 15 6 8.7070 -1.9817 6.3719 16 6 8.9657 -2.8230 7.5953 17 1 8.2159 -3.5196 7.9400 18 6 10.1600 -2.7039 8.2739 19 7 10.3859 -3.4384 9.3412 20 14 11.4571 -1.4994 7.6772 21 1 12.3586 -2.1801 6.7131 22 1 12.2487 -1.0108 8.8348 23 1 10.7955 -0.3499 7.0095 24 6 2.0400 -0.7213 1.2492 25 1 1.6766 -1.7489 1.2492 26 6 1.5300 -0.0001 2.4985 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.6767 -0.2074 -2.1392 31 1 1.6767 -1.7489 -1.2493 32 1 3.9337 0.3058 -1.2486 33 1 3.9334 -1.2360 -2.1386 34 1 5.1695 -1.4434 0.0009 35 1 3.7158 -2.4709 0.0001 36 1 3.5015 -2.0758 2.8840 37 1 5.1729 -2.4258 4.4758 38 1 7.1038 -0.3971 4.8399 39 1 7.8125 -1.6688 3.8157 40 1 7.2734 -3.3617 5.5459 41 1 6.5648 -2.0896 6.5696 42 1 8.7531 -0.9263 6.6400 43 1 9.4623 -2.1980 5.6164 44 1 11.2260 -3.3543 9.8187 45 1 1.8933 1.0276 2.4985 46 1 0.4399 -0.0001 2.4985 47 1 1.8936 -0.5137 3.3884 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245829517.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:33 Heat of formation + Delta-G solvation = -75.972066 kcal Electronic energy + Delta-G solvation = -22338.738038 eV Core-core repulsion = 19133.609527 eV Total energy + Delta-G solvation = -3205.128511 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.42611 -38.91251 -35.59304 -34.45821 -33.40070 -33.22161 -31.58419 -30.45626 -27.58239 -26.79812 -25.77249 -23.10177 -21.79701 -21.35792 -20.73154 -20.42192 -19.90383 -18.03301 -16.85069 -16.28415 -15.53669 -15.10630 -14.96502 -14.89205 -14.58574 -14.44382 -14.03328 -13.92880 -13.69528 -13.13256 -12.84824 -12.66049 -12.45211 -12.15278 -12.07170 -12.03238 -11.88754 -11.74054 -11.33664 -11.14404 -11.04234 -10.87819 -10.78037 -10.62962 -10.35393 -10.20793 -9.96994 -9.79225 -9.64765 -9.21302 -9.13986 -8.62409 -8.54217 -6.05233 -4.03787 2.80762 3.32635 3.37097 3.40071 3.44920 4.26574 4.27686 4.37903 4.45764 4.53099 4.69489 4.84513 5.06922 5.09021 5.14162 5.15049 5.23586 5.29019 5.33053 5.43306 5.49249 5.58070 5.59635 5.62733 5.72102 5.72782 5.74702 5.86912 5.90347 5.95196 6.04718 6.06173 6.06975 6.19683 6.42200 6.49594 6.54107 6.73295 6.85764 7.06455 7.25522 7.38753 7.77182 8.15839 8.51471 8.76236 8.98662 9.57169 11.08007 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039748 B = 0.002559 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.277180 B =10940.862726 C =11272.319015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.131 4.131 7 C 0.171 3.829 8 H 0.086 0.914 9 N -0.745 5.745 10 C 0.701 3.299 11 O -0.594 6.594 12 N -0.743 5.743 13 C 0.133 3.867 14 C -0.112 4.112 15 C -0.011 4.011 16 C -0.521 4.521 17 H 0.072 0.928 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 C -0.092 4.092 25 H 0.074 0.926 26 C -0.149 4.149 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.393 0.607 37 H 0.394 0.606 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.019 0.981 43 H 0.014 0.986 44 H 0.263 0.737 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.604 5.050 -20.521 30.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.170 4.170 7 C 0.065 3.935 8 H 0.104 0.896 9 N -0.400 5.400 10 C 0.401 3.599 11 O -0.473 6.473 12 N -0.397 5.397 13 C 0.010 3.990 14 C -0.151 4.151 15 C -0.049 4.049 16 C -0.559 4.559 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.111 4.111 25 H 0.092 0.908 26 C -0.206 4.206 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.226 0.774 37 H 0.227 0.773 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.033 0.967 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.786 5.801 -20.866 30.018 hybrid contribution 0.304 -0.169 0.283 0.448 sum -20.482 5.632 -20.582 29.578 Atomic orbital electron populations 1.21882 0.95014 1.01850 1.01816 1.21115 0.95570 0.99749 0.93843 0.90897 1.21637 0.95624 1.00670 0.97378 1.21494 0.95333 1.01100 0.97597 1.21958 1.01602 0.99323 0.94099 1.20776 0.92389 0.97111 0.83214 0.89560 1.45195 1.17364 1.46060 1.31417 1.16016 0.81573 0.81577 0.80756 1.90908 1.57217 1.37100 1.62034 1.45339 1.20254 1.44770 1.29357 1.21491 0.81409 1.00003 0.96098 1.21699 1.00438 0.98623 0.94292 1.19503 0.91644 0.97300 0.96471 1.21100 1.02667 1.22641 1.09513 0.91034 1.25032 0.98242 0.95591 0.94670 1.69913 1.25136 1.40431 1.18772 0.86772 0.81820 0.82270 0.78422 1.20250 1.21391 1.18853 1.21413 0.93980 1.00297 0.95427 0.90794 1.21883 1.00857 1.00782 0.97100 0.92713 0.92253 0.92712 0.91910 0.91940 0.91729 0.91806 0.91211 0.92024 0.77367 0.77251 0.92059 0.92062 0.92199 0.92174 0.96284 0.96729 0.92719 0.92555 0.92272 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.84 37.16 0.33 -0.48 16 2 C -0.08 -0.54 2.25 -90.62 -0.20 -0.75 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.12 -0.74 5.20 -26.73 -0.14 -0.87 16 5 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 6 C -0.13 -1.24 5.49 -26.73 -0.15 -1.39 16 7 C 0.17 1.66 1.90 -67.96 -0.13 1.53 16 8 H 0.09 1.06 7.58 -51.93 -0.39 0.66 16 9 N -0.75 -7.85 4.39 -58.70 -0.26 -8.11 16 10 C 0.70 10.40 8.53 -86.92 -0.74 9.66 16 11 O -0.59 -11.34 16.01 5.28 0.08 -11.26 16 12 N -0.74 -10.45 5.56 -65.22 -0.36 -10.82 16 13 C 0.13 2.27 5.67 -4.04 -0.02 2.25 16 14 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 15 C -0.01 -0.26 4.04 -27.88 -0.11 -0.38 16 16 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 19 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 20 Si 0.88 21.90 27.47 -169.99 -4.67 17.24 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 24 C -0.09 -0.66 1.82 -90.65 -0.17 -0.82 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 C -0.15 -1.08 8.68 37.16 0.32 -0.75 16 27 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 28 H 0.06 0.32 6.43 -51.93 -0.33 -0.02 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.39 3.10 8.40 -40.82 -0.34 2.76 16 37 H 0.39 4.43 8.49 -40.82 -0.35 4.08 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 43 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 47 H 0.06 0.43 7.44 -51.93 -0.39 0.05 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -32.89 364.86 -9.50 -42.40 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -8.83 Total: 0.77 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.74 Total: -8.60 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: 0.15 Total: -46.04 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.89 -9.50 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245829517.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.576 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds