Wall clock time and date at job start Tue Mar 31 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47138 * 2 1 4 4 C 1.52994 * 109.46895 * 239.99582 * 2 1 3 5 5 C 1.53002 * 109.46895 * 180.02562 * 4 2 1 6 6 C 1.52992 * 109.47189 * 60.00242 * 5 4 2 7 7 C 1.53003 * 109.47097 * 299.99791 * 6 5 4 8 8 H 1.09004 * 109.47175 * 180.02562 * 7 6 5 9 9 N 1.46492 * 109.47146 * 300.00007 * 7 6 5 10 10 C 1.34777 * 120.00377 * 274.99596 * 9 7 6 11 11 O 1.21591 * 119.99867 * 0.02562 * 10 9 7 12 12 N 1.34774 * 120.00504 * 179.97438 * 10 9 7 13 13 C 1.46497 * 120.00283 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47298 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47355 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47168 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.52997 * 109.46958 * 119.99599 * 2 1 3 25 25 H 1.08998 * 109.47202 * 60.00480 * 24 2 1 26 26 C 1.53003 * 109.47396 * 299.99833 * 24 2 1 27 27 H 1.09002 * 109.46874 * 300.00435 * 1 2 3 28 28 H 1.09000 * 109.46817 * 60.00025 * 1 2 3 29 29 H 1.08990 * 109.47300 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47567 * 300.00081 * 4 2 1 31 31 H 1.09000 * 109.47067 * 60.00547 * 4 2 1 32 32 H 1.08997 * 109.47281 * 180.02562 * 5 4 2 33 33 H 1.09004 * 109.47359 * 299.99912 * 5 4 2 34 34 H 1.09001 * 109.47499 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.47572 * 59.99840 * 6 5 4 36 36 H 0.97006 * 120.00380 * 94.99849 * 9 7 6 37 37 H 0.96997 * 120.00043 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.46745 * 60.00812 * 13 12 10 39 39 H 1.08992 * 109.47732 * 300.00771 * 13 12 10 40 40 H 1.09002 * 109.46807 * 60.00547 * 14 13 12 41 41 H 1.08998 * 109.47285 * 300.00150 * 14 13 12 42 42 H 1.09007 * 109.46922 * 59.99890 * 15 14 13 43 43 H 1.09003 * 109.46836 * 300.00646 * 15 14 13 44 44 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 45 45 H 1.08990 * 109.46915 * 300.00175 * 26 24 2 46 46 H 1.08998 * 109.46567 * 60.00436 * 26 24 2 47 47 H 1.09004 * 109.47175 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2488 6 6 4.0794 -1.4434 0.0004 7 6 3.5695 -0.7221 1.2496 8 1 3.9328 -1.2359 2.1396 9 7 4.0583 0.6589 1.2498 10 6 5.2803 0.9412 1.7434 11 8 5.9771 0.0495 2.1881 12 7 5.7302 2.2116 1.7432 13 6 7.0582 2.5185 2.2802 14 6 7.3214 4.0210 2.1622 15 6 8.7086 4.3414 2.7225 16 6 8.9675 5.8215 2.6067 17 1 8.2176 6.4690 2.1769 18 6 10.1620 6.3491 3.0495 19 7 11.0751 5.5607 3.5734 20 14 10.4832 8.1836 2.9054 21 1 11.1260 8.4724 1.5983 22 1 9.1971 8.9201 2.9981 23 1 11.3820 8.6166 4.0054 24 6 2.0400 -0.7212 1.2493 25 1 1.6767 -1.7488 1.2493 26 6 1.5300 0.0002 2.4985 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6767 -1.7489 -1.2491 31 1 1.6767 -0.2075 -2.1391 32 1 3.9333 -1.2354 -2.1390 33 1 3.9337 0.3057 -1.2487 34 1 5.1694 -1.4434 0.0009 35 1 3.7158 -2.4709 0.0003 36 1 3.5025 1.3702 0.8948 37 1 5.1745 2.9229 1.3881 38 1 7.8136 1.9715 1.7159 39 1 7.1034 2.2233 3.3285 40 1 6.5660 4.5676 2.7268 41 1 7.2762 4.3166 1.1140 42 1 9.4638 3.7948 2.1575 43 1 8.7542 4.0457 3.7706 44 1 11.9155 5.9319 3.8845 45 1 1.8933 1.0277 2.4984 46 1 0.4400 0.0001 2.4985 47 1 1.8937 -0.5134 3.3886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245829520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:36 Heat of formation + Delta-G solvation = -76.002721 kcal Electronic energy + Delta-G solvation = -22612.751864 eV Core-core repulsion = 19407.622023 eV Total energy + Delta-G solvation = -3205.129840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59133 -38.77233 -35.39958 -34.08008 -33.34621 -33.18261 -31.51289 -30.41720 -27.48434 -26.53903 -25.71275 -23.18288 -22.12846 -21.32056 -20.88769 -20.48491 -19.15439 -18.09401 -16.51580 -16.02624 -15.61086 -15.18537 -14.90426 -14.78681 -14.45430 -14.41795 -14.14794 -13.70920 -13.62382 -13.37025 -12.64605 -12.32274 -12.26318 -12.14552 -12.06471 -11.84265 -11.79540 -11.66738 -11.59567 -11.08559 -10.89273 -10.77189 -10.69327 -10.57449 -10.39589 -10.17575 -10.00582 -9.83155 -9.41211 -9.10612 -9.06239 -8.52720 -8.35674 -6.00371 -4.03360 2.91751 3.31592 3.37905 3.40752 3.46000 4.32850 4.33661 4.40640 4.43681 4.50106 4.74210 4.88955 5.09458 5.13647 5.14492 5.20981 5.26780 5.35352 5.38383 5.49142 5.54700 5.60318 5.65602 5.71786 5.74653 5.75473 5.85269 5.89140 5.96873 6.03234 6.07964 6.11510 6.19014 6.22619 6.58700 6.62536 6.65935 6.86483 7.06008 7.16072 7.65824 7.79044 7.98856 8.23928 8.39884 8.85079 9.03454 9.60647 11.10973 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030570 B = 0.002669 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.705756 B =10486.530282 C =10669.096052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 H 0.068 0.932 4 C -0.114 4.114 5 C -0.118 4.118 6 C -0.132 4.132 7 C 0.171 3.829 8 H 0.087 0.913 9 N -0.741 5.741 10 C 0.700 3.300 11 O -0.594 6.594 12 N -0.743 5.743 13 C 0.136 3.864 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.274 1.274 23 H -0.286 1.286 24 C -0.093 4.093 25 H 0.083 0.917 26 C -0.149 4.149 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.391 0.609 37 H 0.392 0.608 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.948 -13.137 -8.522 27.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.171 4.171 7 C 0.065 3.935 8 H 0.105 0.895 9 N -0.398 5.398 10 C 0.400 3.600 11 O -0.472 6.472 12 N -0.398 5.398 13 C 0.013 3.987 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.199 1.199 23 H -0.212 1.212 24 C -0.112 4.112 25 H 0.101 0.899 26 C -0.206 4.206 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.226 0.774 37 H 0.225 0.775 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.093 -13.964 -8.003 27.334 hybrid contribution -0.187 1.712 -0.415 1.772 sum -22.281 -12.252 -8.418 26.784 Atomic orbital electron populations 1.21890 0.95116 1.01840 1.01784 1.21158 0.95565 0.99435 0.94457 0.91393 1.21611 0.95723 1.00590 0.97224 1.21484 0.95157 1.01183 0.97721 1.21951 1.01688 0.98921 0.94550 1.20736 0.92298 0.81775 0.98677 0.89510 1.45230 1.17293 1.09671 1.67635 1.16045 0.81595 0.83495 0.78901 1.90908 1.57251 1.45865 1.53219 1.45388 1.20381 1.06826 1.67165 1.21478 0.81117 0.97649 0.98503 1.21883 1.01543 0.91396 1.00974 1.19026 0.89410 0.96534 0.96397 1.21210 1.01259 0.93083 1.40473 0.92675 1.25035 0.96255 0.97937 0.95266 1.69970 1.07117 1.34948 1.41254 0.86584 0.78140 0.85520 0.77680 1.20672 1.19903 1.21210 1.21447 0.94051 1.00624 0.95061 0.89901 1.21875 1.00806 1.00879 0.97051 0.92276 0.92788 0.92707 0.91971 0.92083 0.92182 0.91895 0.91140 0.91391 0.77401 0.77499 0.92057 0.92059 0.92828 0.92837 0.96268 0.96260 0.92935 0.92468 0.92321 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.84 37.16 0.33 -0.50 16 2 C -0.09 -0.56 2.08 -90.62 -0.19 -0.75 16 3 H 0.07 0.45 6.51 -51.93 -0.34 0.11 16 4 C -0.11 -0.75 5.20 -26.73 -0.14 -0.89 16 5 C -0.12 -0.97 5.76 -26.73 -0.15 -1.13 16 6 C -0.13 -1.28 5.60 -26.73 -0.15 -1.43 16 7 C 0.17 1.69 2.23 -67.96 -0.15 1.54 16 8 H 0.09 1.06 7.58 -51.93 -0.39 0.66 16 9 N -0.74 -8.04 3.54 -58.70 -0.21 -8.25 16 10 C 0.70 10.74 8.53 -86.92 -0.74 10.00 16 11 O -0.59 -11.71 16.01 5.29 0.08 -11.63 16 12 N -0.74 -10.97 5.56 -65.23 -0.36 -11.34 16 13 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 14 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 15 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 16 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 20 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C -0.09 -0.67 2.04 -90.65 -0.18 -0.86 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 26 C -0.15 -1.10 8.68 37.16 0.32 -0.78 16 27 H 0.06 0.32 6.43 -51.93 -0.33 -0.01 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.58 7.60 -51.93 -0.39 0.18 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.39 3.36 6.67 -40.82 -0.27 3.09 16 37 H 0.39 4.65 8.49 -40.82 -0.35 4.30 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 45 H 0.06 0.45 7.44 -51.93 -0.39 0.07 16 46 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -32.34 364.02 -9.74 -42.08 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -8.68 Total: 1.22 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -1.77 Total: -7.85 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 0.17 Total: -45.87 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.63 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.34 -9.74 -42.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245829520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.927 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds