Wall clock time and date at job start Tue Mar 31 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47138 * 2 1 4 4 C 1.52994 * 109.46895 * 239.99582 * 2 1 3 5 5 C 1.53002 * 109.46895 * 180.02562 * 4 2 1 6 6 C 1.52992 * 109.47189 * 60.00242 * 5 4 2 7 7 C 1.53003 * 109.47097 * 299.99791 * 6 5 4 8 8 H 1.09004 * 109.47175 * 180.02562 * 7 6 5 9 9 N 1.46492 * 109.47146 * 300.00007 * 7 6 5 10 10 C 1.34777 * 120.00377 * 274.99596 * 9 7 6 11 11 O 1.21591 * 119.99867 * 0.02562 * 10 9 7 12 12 N 1.34774 * 120.00504 * 179.97438 * 10 9 7 13 13 C 1.46497 * 120.00283 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.47298 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47355 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47168 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.52997 * 109.46958 * 119.99599 * 2 1 3 25 25 H 1.08998 * 109.47202 * 60.00480 * 24 2 1 26 26 C 1.53003 * 109.47396 * 299.99833 * 24 2 1 27 27 H 1.09002 * 109.46874 * 300.00435 * 1 2 3 28 28 H 1.09000 * 109.46817 * 60.00025 * 1 2 3 29 29 H 1.08990 * 109.47300 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47567 * 300.00081 * 4 2 1 31 31 H 1.09000 * 109.47067 * 60.00547 * 4 2 1 32 32 H 1.08997 * 109.47281 * 180.02562 * 5 4 2 33 33 H 1.09004 * 109.47359 * 299.99912 * 5 4 2 34 34 H 1.09001 * 109.47499 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.47572 * 59.99840 * 6 5 4 36 36 H 0.97006 * 120.00380 * 94.99849 * 9 7 6 37 37 H 0.96997 * 120.00043 * 0.02562 * 12 10 9 38 38 H 1.09002 * 109.46745 * 60.00812 * 13 12 10 39 39 H 1.08992 * 109.47732 * 300.00771 * 13 12 10 40 40 H 1.09002 * 109.46807 * 60.00547 * 14 13 12 41 41 H 1.08998 * 109.47285 * 300.00150 * 14 13 12 42 42 H 1.09007 * 109.46922 * 59.99890 * 15 14 13 43 43 H 1.09003 * 109.46836 * 300.00646 * 15 14 13 44 44 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 45 45 H 1.08990 * 109.46915 * 300.00175 * 26 24 2 46 46 H 1.08998 * 109.46567 * 60.00436 * 26 24 2 47 47 H 1.09004 * 109.47175 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2488 6 6 4.0794 -1.4434 0.0004 7 6 3.5695 -0.7221 1.2496 8 1 3.9328 -1.2359 2.1396 9 7 4.0583 0.6589 1.2498 10 6 5.2803 0.9412 1.7434 11 8 5.9771 0.0495 2.1881 12 7 5.7302 2.2116 1.7432 13 6 7.0582 2.5185 2.2802 14 6 7.3214 4.0210 2.1622 15 6 8.7086 4.3414 2.7225 16 6 8.9675 5.8215 2.6067 17 1 8.2176 6.4690 2.1769 18 6 10.1620 6.3491 3.0495 19 7 11.0751 5.5607 3.5734 20 14 10.4832 8.1836 2.9054 21 1 11.1260 8.4724 1.5983 22 1 9.1971 8.9201 2.9981 23 1 11.3820 8.6166 4.0054 24 6 2.0400 -0.7212 1.2493 25 1 1.6767 -1.7488 1.2493 26 6 1.5300 0.0002 2.4985 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6767 -1.7489 -1.2491 31 1 1.6767 -0.2075 -2.1391 32 1 3.9333 -1.2354 -2.1390 33 1 3.9337 0.3057 -1.2487 34 1 5.1694 -1.4434 0.0009 35 1 3.7158 -2.4709 0.0003 36 1 3.5025 1.3702 0.8948 37 1 5.1745 2.9229 1.3881 38 1 7.8136 1.9715 1.7159 39 1 7.1034 2.2233 3.3285 40 1 6.5660 4.5676 2.7268 41 1 7.2762 4.3166 1.1140 42 1 9.4638 3.7948 2.1575 43 1 8.7542 4.0457 3.7706 44 1 11.9155 5.9319 3.8845 45 1 1.8933 1.0277 2.4984 46 1 0.4400 0.0001 2.4985 47 1 1.8937 -0.5134 3.3886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245829520.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:35 Heat of formation + Delta-G solvation = -95.647989 kcal Electronic energy + Delta-G solvation = -22613.603746 eV Core-core repulsion = 19407.622023 eV Total energy + Delta-G solvation = -3205.981723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.56183 -39.78920 -36.96004 -35.18305 -35.04370 -33.92831 -33.06667 -31.50898 -28.58511 -27.86982 -26.41692 -24.96292 -22.82187 -22.37860 -22.26458 -21.64756 -19.99871 -19.29611 -18.51935 -17.19054 -16.84182 -16.50289 -16.10199 -15.85796 -15.71902 -15.38011 -15.16595 -14.84116 -14.55679 -14.26122 -14.03201 -13.73209 -13.56515 -13.22672 -12.96948 -12.75537 -12.71427 -12.67219 -12.54076 -12.38942 -12.35823 -12.26305 -11.71810 -11.66724 -11.62939 -11.35649 -11.28781 -11.12931 -11.01148 -10.84285 -10.55179 -10.28602 -9.70228 -8.19203 -6.30825 1.41811 1.43435 1.54367 1.76144 2.19659 2.42337 3.14533 3.36035 3.67820 3.76768 3.79803 4.11154 4.17912 4.21064 4.23838 4.44825 4.49166 4.53156 4.56672 4.65319 4.65929 4.78554 4.89132 4.92960 4.96400 5.00196 5.04662 5.11669 5.13152 5.16912 5.18918 5.24124 5.31763 5.40583 5.40915 5.48351 5.55686 5.56334 5.59707 5.69686 5.71415 5.84602 6.05525 6.23049 6.86613 7.15219 7.38768 7.63654 8.93094 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030570 B = 0.002669 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.705756 B =10486.530282 C =10669.096052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.068 0.932 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.130 4.130 7 C 0.168 3.832 8 H 0.060 0.940 9 N -0.720 5.720 10 C 0.697 3.303 11 O -0.641 6.641 12 N -0.732 5.732 13 C 0.151 3.849 14 C -0.099 4.099 15 C 0.024 3.976 16 C -0.541 4.541 17 H 0.067 0.933 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.273 1.273 22 H -0.259 1.259 23 H -0.285 1.285 24 C -0.083 4.083 25 H 0.094 0.906 26 C -0.148 4.148 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.036 0.964 35 H 0.082 0.918 36 H 0.406 0.594 37 H 0.410 0.590 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.067 0.933 42 H -0.009 1.009 43 H -0.008 1.008 44 H 0.263 0.737 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.677 -11.953 -9.885 29.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.086 0.914 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.168 4.168 7 C 0.063 3.937 8 H 0.079 0.921 9 N -0.376 5.376 10 C 0.397 3.603 11 O -0.523 6.523 12 N -0.388 5.388 13 C 0.026 3.974 14 C -0.137 4.137 15 C -0.014 4.014 16 C -0.579 4.579 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.792 3.208 21 H -0.198 1.198 22 H -0.183 1.183 23 H -0.211 1.211 24 C -0.102 4.102 25 H 0.113 0.887 26 C -0.205 4.205 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.244 0.756 37 H 0.246 0.754 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -24.897 -12.760 -9.403 29.514 hybrid contribution 0.657 1.264 0.013 1.425 sum -24.240 -11.496 -9.390 28.424 Atomic orbital electron populations 1.21860 0.93945 1.02321 1.02195 1.21145 0.96437 0.99151 0.93594 0.91388 1.21581 0.94011 1.01308 0.97706 1.21457 0.96642 1.00289 0.96830 1.21907 0.99564 1.00123 0.95236 1.20850 0.94357 0.80735 0.97768 0.92142 1.45060 1.15699 1.10760 1.66129 1.16203 0.82431 0.82907 0.78760 1.90882 1.58883 1.47228 1.55291 1.45031 1.19339 1.07411 1.67005 1.21037 0.82522 0.96351 0.97471 1.21579 0.98251 0.92394 1.01503 1.18939 0.92223 0.95568 0.94661 1.21684 1.01705 0.94243 1.40224 0.91477 1.26045 0.96053 1.03319 0.94771 1.70120 1.07728 1.37404 1.42382 0.85401 0.78480 0.79081 0.77795 1.19807 1.18342 1.21051 1.21395 0.91429 1.01606 0.95744 0.88740 1.21873 1.01869 1.00281 0.96501 0.92032 0.92262 0.92212 0.91169 0.91107 0.91898 0.92841 0.94543 0.89906 0.75608 0.75374 0.93766 0.93705 0.91362 0.91396 0.99035 0.99001 0.92810 0.93006 0.90625 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.84 71.98 0.64 -0.50 16 2 C -0.08 -0.85 2.08 -10.80 -0.02 -0.87 16 3 H 0.07 0.70 6.51 -2.38 -0.02 0.68 16 4 C -0.11 -1.14 5.20 30.59 0.16 -0.98 16 5 C -0.11 -1.73 5.76 30.59 0.18 -1.55 16 6 C -0.13 -2.46 5.60 30.59 0.17 -2.29 16 7 C 0.17 3.27 2.23 44.98 0.10 3.37 16 8 H 0.06 1.53 7.58 -2.39 -0.02 1.51 16 9 N -0.72 -15.15 3.54 -457.90 -1.62 -16.78 16 10 C 0.70 21.55 8.53 179.05 1.53 23.07 16 11 O -0.64 -26.26 16.01 -4.00 -0.06 -26.32 16 12 N -0.73 -21.21 5.56 -478.55 -2.66 -23.87 16 13 C 0.15 5.58 5.67 86.38 0.49 6.07 16 14 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 15 C 0.02 1.26 4.97 29.85 0.15 1.41 16 16 C -0.54 -30.42 9.11 25.60 0.23 -30.18 16 17 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 18 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 19 N -0.94 -57.78 13.29 21.45 0.28 -57.49 16 20 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 22 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 24 C -0.08 -1.04 2.04 -10.81 -0.02 -1.06 16 25 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 26 C -0.15 -1.92 8.68 71.98 0.62 -1.30 16 27 H 0.06 0.47 6.43 -2.39 -0.02 0.45 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.90 7.60 -2.38 -0.02 0.89 16 34 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.41 6.25 6.67 -92.70 -0.62 5.63 16 37 H 0.41 8.92 8.49 -92.71 -0.79 8.14 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 42 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 43 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 44 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 45 H 0.05 0.73 7.44 -2.39 -0.02 0.71 16 46 H 0.07 0.74 6.43 -2.39 -0.02 0.73 16 47 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -71.74 364.02 2.34 -69.40 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -0.47 Total: 17.36 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 4.85 Total: -8.34 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -4.00 Total: -98.14 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.06 Total: -26.32 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.74 2.34 -69.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245829520.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.252 kcal (2) G-P(sol) polarization free energy of solvation -71.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds