Wall clock time and date at job start Tue Mar 31 2020 06:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.46786 * 2 1 4 4 C 1.50698 * 109.47144 * 239.99925 * 2 1 3 5 5 O 1.21281 * 120.00226 * 274.60156 * 4 2 1 6 6 N 1.34773 * 119.99883 * 94.59883 * 4 2 1 7 7 C 1.46506 * 119.99651 * 179.97438 * 6 4 2 8 8 C 1.53009 * 109.46952 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.46918 * 180.02562 * 8 7 6 10 10 C 1.50707 * 109.46989 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99764 * 0.02562 * 10 9 8 12 12 C 1.37871 * 119.99878 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99666 * 180.02562 * 12 10 9 14 14 Si 1.86794 * 120.00197 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47296 * 90.00122 * 14 12 10 16 16 H 1.48503 * 109.47392 * 209.99896 * 14 12 10 17 17 H 1.48502 * 109.47385 * 329.99943 * 14 12 10 18 18 N 1.46895 * 109.47011 * 119.99567 * 2 1 3 19 19 C 1.48530 * 111.00054 * 190.66786 * 18 2 1 20 20 H 1.08998 * 110.66690 * 41.29201 * 19 18 2 21 21 C 1.52996 * 110.67293 * 278.16205 * 19 18 2 22 22 C 1.54937 * 103.22838 * 159.72535 * 19 18 2 23 23 C 1.54597 * 102.92097 * 322.58563 * 22 19 18 24 24 C 1.47900 * 111.00540 * 308.07105 * 18 2 1 25 25 H 1.09000 * 109.91408 * 333.50441 * 24 18 2 26 26 C 1.52999 * 109.92007 * 94.79875 * 24 18 2 27 27 H 1.08998 * 109.46791 * 65.90712 * 1 2 3 28 28 H 1.09000 * 109.46700 * 185.90784 * 1 2 3 29 29 H 1.08999 * 109.46896 * 305.90725 * 1 2 3 30 30 H 0.97000 * 120.00215 * 0.02562 * 6 4 2 31 31 H 1.09000 * 109.47307 * 300.00093 * 7 6 4 32 32 H 1.08997 * 109.46965 * 60.00546 * 7 6 4 33 33 H 1.09000 * 109.47057 * 300.00082 * 8 7 6 34 34 H 1.08998 * 109.46906 * 59.99837 * 8 7 6 35 35 H 1.09000 * 109.47307 * 299.99908 * 9 8 7 36 36 H 1.08997 * 109.46999 * 60.00382 * 9 8 7 37 37 H 0.97000 * 119.99910 * 180.02562 * 13 12 10 38 38 H 1.08997 * 109.47351 * 68.31696 * 21 19 18 39 39 H 1.09006 * 109.47681 * 188.32246 * 21 19 18 40 40 H 1.09006 * 109.46934 * 308.32122 * 21 19 18 41 41 H 1.09007 * 110.72594 * 204.23258 * 22 19 18 42 42 H 1.08994 * 110.72411 * 80.94766 * 22 19 18 43 43 H 1.08999 * 110.31297 * 263.04541 * 23 22 19 44 44 H 1.09000 * 110.31081 * 140.86908 * 23 22 19 45 45 H 1.09002 * 109.46723 * 53.47797 * 26 24 18 46 46 H 1.09000 * 109.47099 * 173.47223 * 26 24 18 47 47 H 1.08994 * 109.47102 * 293.47713 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.1551 -1.9170 -1.2264 6 7 2.3453 -0.0049 -2.3353 7 6 2.8342 -0.6956 -3.5313 8 6 3.1137 0.3286 -4.6332 9 6 3.6236 -0.3927 -5.8824 10 6 3.8984 0.6159 -6.9679 11 1 3.7269 1.6664 -6.7848 12 6 4.3697 0.1978 -8.1942 13 7 4.6100 1.0781 -9.1413 14 14 4.6671 -1.6190 -8.5105 15 1 3.4303 -2.2358 -9.0538 16 1 5.7708 -1.7766 -9.4914 17 1 5.0365 -2.2891 -7.2378 18 7 2.0197 -0.6924 1.1995 19 6 3.4819 -0.4939 1.3691 20 1 3.7591 0.5357 1.1430 21 6 4.2651 -1.4709 0.4900 22 6 3.7102 -0.8047 2.8697 23 6 2.4490 -0.2139 3.5408 24 6 1.3937 -0.1428 2.4215 25 1 1.0994 0.8933 2.2541 26 6 0.1717 -0.9805 2.8032 27 1 -0.3633 0.4195 -0.9381 28 1 -0.3633 -1.0222 0.1058 29 1 -0.3633 0.6027 0.8324 30 1 2.2475 0.9601 -2.3385 31 1 3.7529 -1.2309 -3.2917 32 1 2.0803 -1.4036 -3.8757 33 1 2.1952 0.8642 -4.8729 34 1 3.8676 1.0363 -4.2886 35 1 4.5421 -0.9287 -5.6430 36 1 2.8693 -1.1001 -6.2268 37 1 4.9412 0.7839 -10.0042 38 1 4.1211 -1.2118 -0.5588 39 1 5.3253 -1.4120 0.7366 40 1 3.9071 -2.4853 0.6661 41 1 4.6095 -0.3080 3.2340 42 1 3.7679 -1.8803 3.0363 43 1 2.6582 0.7835 3.9275 44 1 2.1060 -0.8674 4.3430 45 1 0.4587 -2.0296 2.8759 46 1 -0.2149 -0.6422 3.7645 47 1 -0.5992 -0.8667 2.0411 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245835597.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:57 Heat of formation + Delta-G solvation = -48.167552 kcal Electronic energy + Delta-G solvation = -23006.350325 eV Core-core repulsion = 19802.427508 eV Total energy + Delta-G solvation = -3203.922817 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55239 -38.69591 -35.47359 -34.00979 -33.22898 -32.77708 -31.38556 -29.16979 -28.43797 -27.28231 -24.40911 -24.02239 -22.45054 -20.77546 -20.61317 -20.17915 -19.62453 -17.39659 -16.72020 -16.57166 -15.65597 -15.27096 -15.08333 -14.80523 -14.31113 -14.14270 -13.77792 -13.61490 -13.19444 -13.11198 -12.72369 -12.62124 -12.38622 -12.33472 -12.02281 -11.96172 -11.87226 -11.75715 -11.64007 -11.17281 -11.07652 -10.91843 -10.85322 -10.80759 -10.63668 -10.15525 -9.93775 -9.76333 -9.42291 -9.23183 -8.79653 -8.61170 -8.56100 -6.07024 -4.05769 2.75736 3.18186 3.31041 3.38618 3.43049 3.74955 4.27368 4.41558 4.43998 4.64862 4.75565 4.86445 4.87894 4.95227 5.10079 5.14542 5.27169 5.34054 5.38307 5.41957 5.45448 5.52208 5.58206 5.60861 5.65422 5.66235 5.67483 5.86659 5.87610 5.96435 6.01151 6.04959 6.10567 6.31760 6.42257 6.44908 6.69173 6.75289 6.78978 6.82771 7.22370 7.35834 7.68833 7.76934 8.42521 8.49909 8.96719 9.55333 11.06255 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.032697 B = 0.003042 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.151322 B = 9203.719057 C = 9466.710984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 H 0.057 0.943 4 C 0.515 3.485 5 O -0.519 6.519 6 N -0.730 5.730 7 C 0.116 3.884 8 C -0.113 4.113 9 C -0.011 4.011 10 C -0.522 4.522 11 H 0.071 0.929 12 C 0.066 3.934 13 N -0.903 5.903 14 Si 0.880 3.120 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.264 1.264 18 N -0.486 5.486 19 C 0.060 3.940 20 H 0.050 0.950 21 C -0.136 4.136 22 C -0.117 4.117 23 C -0.127 4.127 24 C 0.064 3.936 25 H 0.052 0.948 26 C -0.143 4.143 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.397 0.603 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.263 0.737 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.580 -0.789 26.561 27.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.053 4.053 3 H 0.074 0.926 4 C 0.300 3.700 5 O -0.393 6.393 6 N -0.383 5.383 7 C -0.006 4.006 8 C -0.151 4.151 9 C -0.049 4.049 10 C -0.560 4.560 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.542 5.542 14 Si 0.707 3.293 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.189 1.189 18 N -0.212 5.212 19 C -0.048 4.048 20 H 0.068 0.932 21 C -0.194 4.194 22 C -0.155 4.155 23 C -0.166 4.166 24 C -0.045 4.045 25 H 0.070 0.930 26 C -0.200 4.200 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.230 0.770 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.073 0.927 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.557 -2.220 26.289 27.185 hybrid contribution 0.350 0.592 -0.391 0.792 sum -6.206 -1.627 25.898 26.681 Atomic orbital electron populations 1.21967 0.92041 1.03711 1.02466 1.21748 0.97373 0.95628 0.90593 0.92562 1.20245 0.77683 0.88111 0.83975 1.90700 1.51648 1.13928 1.83065 1.46245 1.67421 1.10878 1.13720 1.21615 0.99001 0.96050 0.83974 1.21699 1.01127 0.97391 0.94855 1.19500 0.95999 0.96539 0.92846 1.21100 1.44069 0.94772 0.96060 0.91037 1.25028 0.94818 0.97607 0.96028 1.69915 1.45849 1.33916 1.04555 0.86774 0.78166 0.85926 0.78429 1.20228 1.21367 1.18883 1.64603 1.03943 1.52635 1.00012 1.22836 0.87981 0.98112 0.95828 0.93184 1.21809 0.97916 1.00078 0.99596 1.22513 0.97301 1.01875 0.93848 1.22474 0.95185 1.01164 0.97736 1.22349 0.95356 0.96990 0.89760 0.92974 1.21994 0.96614 1.00796 1.00637 0.91608 0.90555 0.91341 0.76952 0.91936 0.91876 0.92171 0.92190 0.96337 0.96756 0.92694 0.92177 0.92942 0.91221 0.91132 0.90500 0.91592 0.90747 0.91704 0.92715 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 7.60 37.16 0.28 -1.06 16 2 C 0.06 0.64 2.23 -68.86 -0.15 0.49 16 3 H 0.06 0.53 7.85 -51.93 -0.41 0.13 16 4 C 0.52 7.32 4.72 -10.99 -0.05 7.27 16 5 O -0.52 -9.31 14.82 5.56 0.08 -9.22 16 6 N -0.73 -9.97 5.56 -60.29 -0.33 -10.31 16 7 C 0.12 1.93 5.67 -4.03 -0.02 1.90 16 8 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.52 -14.72 9.66 -34.44 -0.33 -15.06 16 11 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 12 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 14 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 18 N -0.49 -5.34 4.28 -208.32 -0.89 -6.23 16 19 C 0.06 0.64 2.87 -65.79 -0.19 0.45 16 20 H 0.05 0.52 7.84 -51.93 -0.41 0.11 16 21 C -0.14 -1.71 8.10 37.16 0.30 -1.41 16 22 C -0.12 -1.00 6.50 -24.87 -0.16 -1.16 16 23 C -0.13 -0.95 6.57 -25.37 -0.17 -1.11 16 24 C 0.06 0.54 2.46 -66.64 -0.16 0.38 16 25 H 0.05 0.41 7.09 -51.93 -0.37 0.05 16 26 C -0.14 -1.12 8.86 37.16 0.33 -0.80 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.81 7.37 -51.93 -0.38 0.43 16 29 H 0.07 0.51 6.02 -51.93 -0.31 0.20 16 30 H 0.40 4.42 8.45 -40.82 -0.34 4.08 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 36 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.06 0.88 5.46 -51.93 -0.28 0.60 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.69 8.05 -51.93 -0.42 0.28 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.50 7.69 -51.93 -0.40 0.10 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.49 5.19 -51.93 -0.27 0.22 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -32.28 358.47 -8.91 -41.19 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.60 Total: -0.07 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -0.68 Total: -10.87 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -0.45 Total: -43.57 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.08 Total: -9.22 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.28 -8.91 -41.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245835597.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.977 kcal (2) G-P(sol) polarization free energy of solvation -32.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds