Wall clock time and date at job start Tue Mar 31 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47383 * 2 1 4 4 C 1.50706 * 109.46538 * 239.99944 * 2 1 3 5 5 O 1.21280 * 120.00232 * 244.30708 * 4 2 1 6 6 N 1.34781 * 120.00016 * 64.31072 * 4 2 1 7 7 C 1.46493 * 120.00052 * 179.97438 * 6 4 2 8 8 C 1.53007 * 109.47076 * 180.02562 * 7 6 4 9 9 C 1.53005 * 109.47014 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46840 * 179.97438 * 9 8 7 11 11 H 1.07996 * 119.99840 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99812 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00270 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 120.00208 * 0.02562 * 12 10 9 15 15 H 1.48505 * 109.47239 * 89.99314 * 14 12 10 16 16 H 1.48503 * 109.47442 * 209.99836 * 14 12 10 17 17 H 1.48504 * 109.47035 * 329.99706 * 14 12 10 18 18 N 1.46901 * 109.47291 * 120.00535 * 2 1 3 19 19 C 1.47839 * 111.00272 * 67.06181 * 18 2 1 20 20 H 1.09006 * 110.37391 * 27.53172 * 19 18 2 21 21 C 1.52999 * 110.37383 * 265.19637 * 19 18 2 22 22 C 1.54904 * 104.80005 * 146.36463 * 19 18 2 23 23 C 1.55147 * 101.64865 * 322.92922 * 22 19 18 24 24 C 1.47438 * 110.99958 * 187.90454 * 18 2 1 25 25 H 1.09005 * 109.89011 * 117.17208 * 24 18 2 26 26 C 1.53005 * 109.88956 * 356.14688 * 24 18 2 27 27 H 1.08998 * 109.47012 * 172.58484 * 1 2 3 28 28 H 1.09001 * 109.46572 * 292.58074 * 1 2 3 29 29 H 1.08994 * 109.47371 * 52.57980 * 1 2 3 30 30 H 0.97006 * 119.99458 * 359.97438 * 6 4 2 31 31 H 1.08993 * 109.47945 * 300.00471 * 7 6 4 32 32 H 1.09002 * 109.46809 * 60.00896 * 7 6 4 33 33 H 1.09000 * 109.46745 * 300.00356 * 8 7 6 34 34 H 1.08997 * 109.46885 * 60.00301 * 8 7 6 35 35 H 1.09000 * 109.46641 * 299.99733 * 9 8 7 36 36 H 1.08997 * 109.47143 * 59.99799 * 9 8 7 37 37 H 0.96994 * 120.00278 * 180.02562 * 13 12 10 38 38 H 1.09000 * 109.47709 * 65.36335 * 21 19 18 39 39 H 1.09005 * 109.47106 * 185.35893 * 21 19 18 40 40 H 1.08997 * 109.47131 * 305.35630 * 21 19 18 41 41 H 1.09004 * 110.99564 * 204.84203 * 22 19 18 42 42 H 1.09002 * 110.99185 * 81.01671 * 22 19 18 43 43 H 1.08991 * 110.70612 * 277.26757 * 23 22 19 44 44 H 1.08999 * 110.70338 * 154.03350 * 23 22 19 45 45 H 1.09001 * 109.46888 * 49.63998 * 26 24 18 46 46 H 1.09001 * 109.47268 * 169.63901 * 26 24 18 47 47 H 1.08999 * 109.47069 * 289.64120 * 26 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 8 2.6637 -1.7401 -1.1211 6 7 1.7798 -0.2015 -2.4528 7 6 2.2684 -0.8918 -3.6489 8 6 1.8492 -0.1104 -4.8958 9 6 2.3590 -0.8317 -6.1451 10 6 1.9456 -0.0624 -7.3732 11 1 1.3758 0.8496 -7.2726 12 6 2.2947 -0.5227 -8.6250 13 7 1.9344 0.1489 -9.6968 14 14 3.2796 -2.1004 -8.7989 15 1 2.3510 -3.2544 -8.9060 16 1 4.1208 -2.0269 -10.0205 17 1 4.1500 -2.2744 -7.6083 18 7 2.0198 -0.6926 1.1994 19 6 1.6893 -2.1328 1.1516 20 1 1.6132 -2.4706 0.1181 21 6 0.3824 -2.4045 1.8995 22 6 2.8733 -2.8343 1.8626 23 6 4.0754 -1.9734 1.3925 24 6 3.4813 -0.5505 1.3318 25 1 3.7197 -0.0072 2.2463 26 6 4.0435 0.1970 0.1209 27 1 -0.3633 -1.0191 -0.1326 28 1 -0.3632 0.3946 0.9489 29 1 -0.3634 0.6244 -0.8161 30 1 1.2744 0.6219 -2.5403 31 1 3.3556 -0.9590 -3.6111 32 1 1.8436 -1.8949 -3.6885 33 1 0.7619 -0.0430 -4.9337 34 1 2.2743 0.8925 -4.8559 35 1 3.4463 -0.8994 -6.1072 36 1 1.9337 -1.8345 -6.1846 37 1 2.1797 -0.1752 -10.5774 38 1 -0.4419 -1.9157 1.3802 39 1 0.2020 -3.4788 1.9373 40 1 0.4561 -2.0126 2.9139 41 1 2.9760 -3.8656 1.5250 42 1 2.7606 -2.7890 2.9458 43 1 4.4152 -2.2915 0.4070 44 1 4.8894 -2.0206 2.1158 45 1 3.4638 1.1047 -0.0469 46 1 5.0846 0.4602 0.3076 47 1 3.9824 -0.4412 -0.7605 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245835605.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:00 Heat of formation + Delta-G solvation = -23.473397 kcal Electronic energy + Delta-G solvation = -23564.945482 eV Core-core repulsion = 20362.093484 eV Total energy + Delta-G solvation = -3202.851998 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.38038 -38.19060 -35.51097 -34.00296 -33.15926 -32.93501 -31.40940 -29.04347 -28.15588 -27.24846 -24.75846 -23.51752 -22.48716 -20.99608 -20.84045 -20.29042 -19.16102 -17.08533 -16.80920 -16.60889 -16.07266 -15.63246 -15.03968 -14.59917 -14.39686 -14.08833 -13.86178 -13.35654 -13.08336 -13.00082 -12.74203 -12.62263 -12.48490 -12.30169 -11.98328 -11.94749 -11.77813 -11.61008 -11.24759 -11.12991 -11.01713 -10.89354 -10.77132 -10.49601 -10.42302 -10.15290 -10.00048 -9.85546 -9.72699 -9.26889 -8.91184 -8.58938 -8.17751 -6.09594 -4.08556 2.58163 3.27899 3.28862 3.36071 3.39731 3.72872 4.41119 4.52947 4.60470 4.70760 4.87467 4.93971 5.00323 5.16099 5.24373 5.28064 5.39493 5.43715 5.49215 5.50645 5.57001 5.59141 5.60049 5.68288 5.71694 5.83076 5.88453 5.92041 5.95519 6.04148 6.08470 6.14823 6.27495 6.34448 6.39069 6.41454 6.65239 6.74788 6.89365 6.95406 7.18057 7.31562 7.55871 7.72862 8.23640 8.46812 8.94102 9.52574 11.03662 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027617 B = 0.003393 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.617999 B = 8251.266783 C = 8487.991709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 H 0.111 0.889 4 C 0.489 3.511 5 O -0.537 6.537 6 N -0.722 5.722 7 C 0.113 3.887 8 C -0.113 4.113 9 C -0.011 4.011 10 C -0.523 4.523 11 H 0.072 0.928 12 C 0.067 3.933 13 N -0.903 5.903 14 Si 0.880 3.120 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.265 1.265 18 N -0.496 5.496 19 C 0.046 3.954 20 H 0.099 0.901 21 C -0.142 4.142 22 C -0.116 4.116 23 C -0.129 4.129 24 C 0.077 3.923 25 H 0.080 0.920 26 C -0.201 4.201 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.399 0.601 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.264 0.736 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 -1.342 24.738 24.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.062 4.062 3 H 0.128 0.872 4 C 0.276 3.724 5 O -0.417 6.417 6 N -0.372 5.372 7 C -0.010 4.010 8 C -0.151 4.151 9 C -0.048 4.048 10 C -0.561 4.561 11 H 0.090 0.910 12 C -0.134 4.134 13 N -0.541 5.541 14 Si 0.707 3.293 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.190 1.190 18 N -0.219 5.219 19 C -0.061 4.061 20 H 0.116 0.884 21 C -0.200 4.200 22 C -0.154 4.154 23 C -0.168 4.168 24 C -0.031 4.031 25 H 0.098 0.902 26 C -0.258 4.258 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.233 0.767 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.036 0.964 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.365 -1.841 25.043 25.113 hybrid contribution 0.724 -0.655 -1.081 1.457 sum 0.359 -2.496 23.962 24.095 Atomic orbital electron populations 1.21917 0.92315 1.02831 1.03080 1.22131 0.97191 0.99675 0.87217 0.87166 1.21704 0.79193 0.85920 0.85623 1.90607 1.40364 1.24461 1.86278 1.46384 1.56376 1.28193 1.06298 1.21648 0.99168 0.96487 0.83690 1.21703 1.00997 0.99212 0.93200 1.19496 0.96377 0.95956 0.93017 1.21090 1.35485 1.10316 0.89187 0.91004 1.25026 0.95514 0.97041 0.95860 1.69907 1.46718 1.39458 0.98051 0.86781 0.80730 0.84015 0.77794 1.20224 1.21316 1.18968 1.64052 1.12463 1.12344 1.33034 1.23060 0.94621 0.86803 1.01660 0.88368 1.21939 0.96903 1.00514 1.00656 1.22578 0.94527 0.98801 0.99516 1.22790 0.97463 0.94496 1.02019 1.22247 0.86635 0.96297 0.97954 0.90236 1.23006 1.01175 1.01102 1.00503 0.91822 0.90557 0.91681 0.76663 0.91909 0.91879 0.92127 0.92117 0.96389 0.96812 0.92661 0.92423 0.92873 0.92537 0.91379 0.91657 0.90229 0.91971 0.92238 0.92506 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 8.06 37.16 0.30 -0.94 16 2 C 0.05 0.52 2.32 -68.86 -0.16 0.36 16 3 H 0.11 1.01 5.99 -51.93 -0.31 0.70 16 4 C 0.49 6.25 4.24 -10.98 -0.05 6.21 16 5 O -0.54 -8.33 9.72 5.56 0.05 -8.28 16 6 N -0.72 -9.12 5.51 -60.29 -0.33 -9.45 16 7 C 0.11 1.78 5.67 -4.04 -0.02 1.76 16 8 C -0.11 -2.05 5.27 -26.73 -0.14 -2.19 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.36 16 10 C -0.52 -14.60 9.66 -34.44 -0.33 -14.94 16 11 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 12 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 14 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 17 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 18 N -0.50 -5.41 4.82 -209.04 -1.01 -6.41 16 19 C 0.05 0.52 1.96 -66.19 -0.13 0.39 16 20 H 0.10 1.38 4.80 -52.12 -0.25 1.12 16 21 C -0.14 -1.37 9.23 37.16 0.34 -1.03 16 22 C -0.12 -1.25 6.50 -24.59 -0.16 -1.41 16 23 C -0.13 -1.45 5.94 -24.91 -0.15 -1.59 16 24 C 0.08 0.84 3.72 -66.73 -0.25 0.59 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 C -0.20 -2.26 7.65 37.16 0.28 -1.97 16 27 H 0.06 0.61 6.04 -51.93 -0.31 0.29 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.48 8.06 -51.93 -0.42 0.06 16 30 H 0.40 4.12 8.39 -40.82 -0.34 3.78 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 36 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.06 0.53 5.46 -51.93 -0.28 0.25 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.64 8.06 -51.93 -0.42 0.22 16 43 H 0.08 1.06 6.73 -51.93 -0.35 0.71 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.61 5.70 -51.93 -0.30 0.31 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 1.21 4.26 -51.93 -0.22 0.98 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -30.78 346.07 -8.85 -39.62 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.21 Total: 2.47 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.67 Total: -13.28 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: -0.57 Total: -42.69 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.05 Total: -8.28 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.78 -8.85 -39.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245835605.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.150 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds