Wall clock time and date at job start Tue Mar 31 2020 06:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47447 * 2 1 4 4 C 1.50705 * 109.46981 * 239.99885 * 2 1 3 5 5 O 1.21285 * 119.99923 * 267.20411 * 4 2 1 6 6 N 1.34769 * 119.99857 * 87.20900 * 4 2 1 7 7 C 1.46500 * 120.00451 * 354.65515 * 6 4 2 8 8 C 1.46509 * 119.99913 * 174.65895 * 6 4 2 9 9 C 1.50689 * 109.47085 * 89.99665 * 8 6 4 10 10 H 1.08000 * 120.00679 * 359.97438 * 9 8 6 11 11 C 1.37880 * 119.99854 * 179.97438 * 9 8 6 12 12 N 1.31515 * 120.00289 * 179.97438 * 11 9 8 13 13 Si 1.86799 * 119.99907 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47662 * 89.99615 * 13 11 9 15 15 H 1.48502 * 109.47189 * 209.99817 * 13 11 9 16 16 H 1.48504 * 109.47155 * 329.99452 * 13 11 9 17 17 N 1.46901 * 109.47047 * 120.00233 * 2 1 3 18 18 C 1.46849 * 111.00207 * 173.18515 * 17 2 1 19 19 C 1.53040 * 109.52302 * 174.15994 * 18 17 2 20 20 C 1.53114 * 109.27898 * 59.17847 * 19 18 17 21 21 H 1.08997 * 109.52448 * 62.25139 * 20 19 18 22 22 C 1.52999 * 109.52159 * 182.37707 * 20 19 18 23 23 C 1.53118 * 109.15957 * 302.34502 * 20 19 18 24 24 H 1.09009 * 109.50300 * 177.59726 * 23 20 19 25 25 C 1.53002 * 109.50530 * 297.67410 * 23 20 19 26 26 C 1.46850 * 110.99976 * 48.97221 * 17 2 1 27 27 H 1.08997 * 109.47462 * 174.03493 * 1 2 3 28 28 H 1.09003 * 109.46960 * 54.03647 * 1 2 3 29 29 H 1.09003 * 109.47264 * 294.03538 * 1 2 3 30 30 H 1.08989 * 109.47492 * 94.62703 * 7 6 4 31 31 H 1.08996 * 109.47342 * 214.63250 * 7 6 4 32 32 H 1.09003 * 109.46383 * 334.62618 * 7 6 4 33 33 H 1.09003 * 109.46644 * 209.99729 * 8 6 4 34 34 H 1.08996 * 109.46850 * 329.99269 * 8 6 4 35 35 H 0.97000 * 120.00255 * 180.02562 * 12 11 9 36 36 H 1.09001 * 109.46036 * 294.17313 * 18 17 2 37 37 H 1.08993 * 109.45956 * 54.14019 * 18 17 2 38 38 H 1.08993 * 109.49941 * 179.11816 * 19 18 17 39 39 H 1.08993 * 109.50203 * 299.19602 * 19 18 17 40 40 H 1.08998 * 109.47080 * 60.00392 * 22 20 19 41 41 H 1.09008 * 109.47018 * 180.02562 * 22 20 19 42 42 H 1.08998 * 109.46831 * 299.99864 * 22 20 19 43 43 H 1.09003 * 109.47022 * 60.00065 * 25 23 20 44 44 H 1.08999 * 109.47079 * 180.02562 * 25 23 20 45 45 H 1.09004 * 109.46796 * 300.00380 * 25 23 20 46 46 H 1.09001 * 109.46017 * 305.85675 * 26 17 2 47 47 H 1.08993 * 109.46058 * 65.82853 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.2827 -1.8964 -1.1863 6 7 2.2033 -0.0280 -2.3800 7 6 1.7914 1.3752 -2.4671 8 6 2.8011 -0.6894 -3.5426 9 6 1.7152 -1.3220 -4.3740 10 1 0.6830 -1.2401 -4.0671 11 6 2.0394 -2.0055 -5.5268 12 7 1.0918 -2.5581 -6.2523 13 14 3.8248 -2.1479 -6.0573 14 1 4.4227 -3.3694 -5.4610 15 1 3.8958 -2.2344 -7.5381 16 1 4.5755 -0.9529 -5.5948 17 7 2.0196 -0.6925 1.1994 18 6 3.4785 -0.8547 1.1549 19 6 3.9680 -1.4458 2.4789 20 6 3.2920 -2.8003 2.7084 21 1 3.5766 -3.4890 1.9129 22 6 3.7323 -3.3692 4.0588 23 6 1.7726 -2.6111 2.7022 24 1 1.2849 -3.5786 2.8225 25 6 1.3680 -1.6884 3.8536 26 6 1.3466 -1.9863 1.3717 27 1 -0.3634 -1.0220 -0.1068 28 1 -0.3633 0.6035 -0.8318 29 1 -0.3634 0.4186 0.9386 30 1 2.6453 2.0184 -2.2554 31 1 1.4198 1.5831 -3.4704 32 1 1.0022 1.5679 -1.7402 33 1 3.3369 0.0457 -4.1431 34 1 3.4956 -1.4589 -3.2055 35 1 1.3199 -3.0393 -7.0630 36 1 3.7446 -1.5249 0.3375 37 1 3.9470 0.1164 0.9953 38 1 5.0489 -1.5806 2.4396 39 1 3.7151 -0.7692 3.2951 40 1 3.4452 -2.6811 4.8538 41 1 3.2509 -4.3336 4.2211 42 1 4.8145 -3.4984 4.0631 43 1 1.8548 -0.7207 3.7320 44 1 0.2862 -1.5545 3.8489 45 1 1.6747 -2.1330 4.8004 46 1 0.2668 -1.8370 1.3697 47 1 1.6227 -2.6511 0.5533 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245968627.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:06 Heat of formation + Delta-G solvation = -34.413176 kcal Electronic energy + Delta-G solvation = -24237.763122 eV Core-core repulsion = 21034.436740 eV Total energy + Delta-G solvation = -3203.326382 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.38866 -38.42616 -35.33990 -34.72336 -32.57703 -31.81383 -30.84762 -28.49949 -27.50906 -26.59698 -25.91346 -23.90462 -22.40666 -22.30742 -20.95388 -18.72395 -18.13879 -16.96405 -16.53539 -16.36558 -15.02089 -14.86010 -14.80459 -14.56647 -14.26427 -14.00141 -13.75085 -13.15601 -13.08322 -12.87987 -12.52892 -12.40424 -12.17721 -12.07062 -11.92992 -11.85122 -11.74020 -11.52277 -11.39373 -11.11673 -10.98591 -10.92603 -10.69702 -10.53338 -10.32958 -10.16544 -10.02302 -9.92942 -9.62649 -9.45377 -8.60325 -7.77835 -7.66484 -6.09906 -4.08366 3.26300 3.27116 3.33128 3.34775 3.85860 4.08378 4.37967 4.78039 4.85697 4.88958 5.04179 5.15388 5.23979 5.34586 5.37307 5.43985 5.48875 5.54891 5.60310 5.64647 5.71794 5.76911 5.82733 5.83909 5.91980 5.96206 5.97609 6.02495 6.12074 6.13400 6.17227 6.27100 6.29954 6.34300 6.43059 6.49363 6.64417 6.67177 6.89957 7.19219 7.28648 7.33614 7.59924 8.23431 8.45870 8.91198 8.96720 9.50479 11.03583 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022204 B = 0.004762 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.704801 B = 5878.046710 C = 6326.455335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 H 0.097 0.903 4 C 0.482 3.518 5 O -0.537 6.537 6 N -0.596 5.596 7 C 0.079 3.921 8 C 0.216 3.784 9 C -0.526 4.526 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.898 5.898 13 Si 0.876 3.124 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.267 1.267 17 N -0.505 5.505 18 C 0.040 3.960 19 C -0.106 4.106 20 C -0.090 4.090 21 H 0.068 0.932 22 C -0.146 4.146 23 C -0.081 4.081 24 H 0.067 0.933 25 C -0.139 4.139 26 C 0.037 3.963 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.032 0.968 35 H 0.264 0.736 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.046 0.954 45 H 0.045 0.955 46 H 0.072 0.928 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.708 6.318 18.611 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.050 4.050 3 H 0.115 0.885 4 C 0.267 3.733 5 O -0.414 6.414 6 N -0.328 5.328 7 C -0.065 4.065 8 C 0.095 3.905 9 C -0.564 4.564 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.703 3.297 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.191 1.191 17 N -0.229 5.229 18 C -0.088 4.088 19 C -0.143 4.143 20 C -0.109 4.109 21 H 0.086 0.914 22 C -0.203 4.203 23 C -0.100 4.100 24 H 0.085 0.915 25 C -0.196 4.196 26 C -0.091 4.091 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.706 5.880 18.859 19.939 hybrid contribution 1.030 -0.576 -1.341 1.787 sum 3.737 5.304 17.517 18.680 Atomic orbital electron populations 1.21848 0.92425 1.03188 1.02524 1.21887 0.97167 0.98697 0.87295 0.88492 1.21602 0.78862 0.87816 0.85001 1.90600 1.51508 1.14997 1.84333 1.47988 1.60605 1.11515 1.12693 1.21740 0.99017 0.82380 1.03329 1.19631 0.94651 0.93033 0.83215 1.21301 0.94570 1.33839 1.06699 0.90831 1.24861 0.97189 0.94785 0.96182 1.69896 1.32360 1.35615 1.15763 0.86855 0.85702 0.79242 0.77895 1.19995 1.21027 1.19142 1.62499 1.05150 1.21714 1.33563 1.22237 0.87986 1.00545 0.98046 1.21598 0.98882 0.96388 0.97453 1.21176 0.95259 0.96911 0.97523 0.91366 1.21867 1.00609 1.00571 0.97253 1.21161 0.95098 0.98436 0.95284 0.91489 1.21814 1.00629 1.00455 0.96740 1.22470 0.98536 0.90660 0.97402 0.91666 0.91520 0.91003 0.93658 0.90644 0.91697 0.95393 0.94952 0.92580 0.92531 0.91647 0.92133 0.91279 0.92419 0.93000 0.93143 0.91344 0.93476 0.93582 0.90921 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.14 37.16 0.30 -1.60 16 2 C 0.06 0.92 2.11 -68.86 -0.15 0.78 16 3 H 0.10 1.27 6.96 -51.93 -0.36 0.91 16 4 C 0.48 9.58 5.87 -10.99 -0.06 9.52 16 5 O -0.54 -12.75 12.03 5.55 0.07 -12.68 16 6 N -0.60 -12.20 2.86 -182.96 -0.52 -12.73 16 7 C 0.08 1.21 9.89 59.85 0.59 1.80 16 8 C 0.22 5.30 4.21 -5.19 -0.02 5.28 16 9 C -0.53 -15.19 9.94 -34.44 -0.34 -15.54 16 10 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 11 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 12 N -0.90 -27.86 13.96 55.43 0.77 -27.09 16 13 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 14 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 17 N -0.51 -7.21 4.02 -228.08 -0.92 -8.12 16 18 C 0.04 0.57 4.88 -3.83 -0.02 0.55 16 19 C -0.11 -1.26 5.02 -26.65 -0.13 -1.39 16 20 C -0.09 -1.09 2.56 -90.50 -0.23 -1.32 16 21 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 22 C -0.15 -1.43 8.80 37.16 0.33 -1.11 16 23 C -0.08 -1.00 2.77 -90.54 -0.25 -1.25 16 24 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 25 C -0.14 -1.48 8.34 37.16 0.31 -1.17 16 26 C 0.04 0.54 4.06 -3.83 -0.02 0.53 16 27 H 0.06 0.98 6.58 -51.93 -0.34 0.64 16 28 H 0.07 0.86 6.67 -51.93 -0.35 0.51 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.58 8.14 -51.94 -0.42 0.16 16 31 H 0.07 1.21 8.11 -51.93 -0.42 0.79 16 32 H 0.06 0.82 5.00 -51.93 -0.26 0.56 16 33 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 34 H 0.03 0.85 6.93 -51.93 -0.36 0.49 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.06 1.01 6.03 -51.93 -0.31 0.70 16 37 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.77 6.59 -51.93 -0.34 0.43 16 40 H 0.06 0.52 6.38 -51.93 -0.33 0.19 16 41 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.77 6.02 -51.93 -0.31 0.46 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.44 6.39 -51.93 -0.33 0.10 16 46 H 0.07 1.03 5.95 -51.93 -0.31 0.72 16 47 H 0.07 1.37 5.70 -51.93 -0.30 1.07 16 LS Contribution 343.22 15.07 5.17 5.17 Total: -1.00 -32.68 343.22 -7.98 -40.66 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -8.09 Total: 0.61 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 0.21 Total: -2.90 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: -0.66 Total: -47.94 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.68 -7.98 -40.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245968627.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.246 kcal (2) G-P(sol) polarization free energy of solvation -32.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds