Wall clock time and date at job start Tue Mar 31 2020 06:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46866 * 2 1 4 4 C 1.50692 * 109.47047 * 239.99371 * 2 1 3 5 5 O 1.21284 * 120.00215 * 266.08044 * 4 2 1 6 6 N 1.34774 * 120.00195 * 86.08385 * 4 2 1 7 7 C 1.46499 * 119.99777 * 359.97438 * 6 4 2 8 8 C 1.46497 * 120.00094 * 179.97438 * 6 4 2 9 9 C 1.50696 * 109.47298 * 90.00181 * 8 6 4 10 10 H 1.08004 * 120.00156 * 359.97438 * 9 8 6 11 11 C 1.37878 * 120.00518 * 179.97438 * 9 8 6 12 12 N 1.31518 * 119.99541 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00097 * 179.72122 * 11 9 8 14 14 H 1.48501 * 109.47115 * 60.00497 * 13 11 9 15 15 H 1.48510 * 109.47064 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.47514 * 299.99763 * 13 11 9 17 17 N 1.46904 * 109.46802 * 119.99264 * 2 1 3 18 18 C 1.46844 * 110.99963 * 173.98630 * 17 2 1 19 19 C 1.53031 * 109.52447 * 174.16382 * 18 17 2 20 20 C 1.53117 * 109.27928 * 59.17946 * 19 18 17 21 21 H 1.09000 * 109.52462 * 62.31518 * 20 19 18 22 22 C 1.53009 * 109.52246 * 182.43959 * 20 19 18 23 23 C 1.53112 * 109.16014 * 302.34321 * 20 19 18 24 24 H 1.09000 * 109.51046 * 297.67645 * 23 20 19 25 25 C 1.53009 * 109.50442 * 177.59495 * 23 20 19 26 26 C 1.46847 * 111.00025 * 49.77937 * 17 2 1 27 27 H 1.09000 * 109.47354 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47253 * 300.00513 * 1 2 3 29 29 H 1.09000 * 109.46862 * 60.00431 * 1 2 3 30 30 H 1.08995 * 109.47252 * 269.99859 * 7 6 4 31 31 H 1.09003 * 109.47149 * 30.00134 * 7 6 4 32 32 H 1.09004 * 109.46967 * 149.99758 * 7 6 4 33 33 H 1.08997 * 109.47586 * 329.99875 * 8 6 4 34 34 H 1.09006 * 109.47081 * 210.00060 * 8 6 4 35 35 H 0.97004 * 119.99440 * 180.02562 * 12 11 9 36 36 H 1.09008 * 109.46339 * 294.17774 * 18 17 2 37 37 H 1.09001 * 109.46506 * 54.15309 * 18 17 2 38 38 H 1.09006 * 109.50603 * 179.11857 * 19 18 17 39 39 H 1.09005 * 109.50210 * 299.19716 * 19 18 17 40 40 H 1.09000 * 109.46616 * 59.99949 * 22 20 19 41 41 H 1.09002 * 109.47169 * 179.97438 * 22 20 19 42 42 H 1.08990 * 109.47195 * 300.00237 * 22 20 19 43 43 H 1.08997 * 109.46531 * 60.00680 * 25 23 20 44 44 H 1.08994 * 109.46805 * 180.02562 * 25 23 20 45 45 H 1.08995 * 109.46763 * 300.00519 * 25 23 20 46 46 H 1.09007 * 109.46312 * 305.85235 * 26 17 2 47 47 H 1.09001 * 109.46510 * 65.82046 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 8 2.3022 -1.8919 -1.1807 6 7 2.1818 -0.0332 -2.3859 7 6 1.8554 1.3937 -2.4460 8 6 2.6706 -0.7238 -3.5818 9 6 1.5021 -1.2814 -4.3528 10 1 0.4958 -1.1363 -3.9882 11 6 1.7174 -1.9769 -5.5237 12 7 2.9426 -2.1532 -5.9679 13 14 0.2693 -2.6748 -6.4752 14 1 -0.6383 -1.5699 -6.8761 15 1 0.7646 -3.3727 -7.6889 16 1 -0.4695 -3.6360 -5.6178 17 7 2.0196 -0.6924 1.1996 18 6 3.4804 -0.8376 1.1639 19 6 3.9680 -1.4292 2.4884 20 6 3.3061 -2.7924 2.7073 21 1 3.6046 -3.4744 1.9112 22 6 3.7427 -3.3618 4.0587 23 6 1.7847 -2.6206 2.6920 24 1 1.4835 -1.9703 3.5133 25 6 1.1146 -3.9870 2.8502 26 6 1.3604 -1.9945 1.3616 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.8080 1.5156 -2.7219 31 1 2.0293 1.8476 -1.4703 32 1 2.4862 1.8797 -3.1904 33 1 3.3326 -1.5378 -3.2863 34 1 3.2177 -0.0203 -4.2095 35 1 3.0940 -2.6422 -6.7919 36 1 3.7596 -1.5010 0.3452 37 1 3.9390 0.1395 1.0121 38 1 5.0507 -1.5515 2.4557 39 1 3.7020 -0.7593 3.3061 40 1 3.4418 -2.6802 4.8544 41 1 3.2707 -4.3319 4.2139 42 1 4.8263 -3.4784 4.0708 43 1 1.4199 -4.4339 3.7963 44 1 0.0317 -3.8641 2.8387 45 1 1.4150 -4.6363 2.0279 46 1 0.2790 -1.8577 1.3531 47 1 1.6494 -2.6524 0.5420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245968631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:09 Heat of formation + Delta-G solvation = -41.134272 kcal Electronic energy + Delta-G solvation = -24104.225255 eV Core-core repulsion = 20900.607424 eV Total energy + Delta-G solvation = -3203.617831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.24392 -38.22150 -35.26770 -34.64315 -32.65524 -32.22374 -30.72725 -27.94838 -27.31089 -26.56222 -25.77193 -23.89008 -22.54602 -21.69972 -20.95479 -19.50713 -18.25238 -16.58068 -16.53982 -16.00800 -14.97170 -14.89466 -14.60041 -14.42870 -14.23161 -14.01043 -13.76992 -13.17813 -13.02587 -12.75416 -12.41513 -12.14356 -12.08831 -12.00776 -11.89339 -11.76280 -11.72360 -11.54248 -11.25160 -11.21203 -10.93424 -10.83535 -10.67819 -10.54746 -10.40708 -10.15262 -9.98515 -9.86945 -9.67010 -9.43719 -8.44354 -7.73044 -7.58809 -6.05403 -4.10072 3.30377 3.34012 3.35068 3.40958 3.98188 4.10882 4.43621 4.80984 4.86168 4.93625 5.10227 5.13749 5.28537 5.30681 5.41147 5.48558 5.56430 5.61187 5.64888 5.68892 5.72657 5.78246 5.84743 5.90488 5.94402 5.96060 6.03700 6.06352 6.11335 6.15986 6.18114 6.29122 6.29613 6.35344 6.42048 6.45878 6.71113 7.01615 7.24789 7.33392 7.42233 7.53844 7.90630 8.22482 8.40450 8.88598 9.07827 9.54899 11.02694 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020463 B = 0.004622 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.988038 B = 6055.919133 C = 6389.911599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.058 3.942 3 H 0.098 0.902 4 C 0.480 3.520 5 O -0.540 6.540 6 N -0.599 5.599 7 C 0.083 3.917 8 C 0.245 3.755 9 C -0.525 4.525 10 H 0.055 0.945 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.277 1.277 17 N -0.511 5.511 18 C 0.040 3.960 19 C -0.105 4.105 20 C -0.090 4.090 21 H 0.069 0.931 22 C -0.145 4.145 23 C -0.079 4.079 24 H 0.070 0.930 25 C -0.147 4.147 26 C 0.036 3.964 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.030 0.970 35 H 0.264 0.736 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 4.416 17.337 17.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.054 4.054 3 H 0.116 0.884 4 C 0.266 3.734 5 O -0.418 6.418 6 N -0.331 5.331 7 C -0.061 4.061 8 C 0.125 3.875 9 C -0.564 4.564 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.202 1.202 17 N -0.234 5.234 18 C -0.088 4.088 19 C -0.142 4.142 20 C -0.109 4.109 21 H 0.088 0.912 22 C -0.202 4.202 23 C -0.098 4.098 24 H 0.088 0.912 25 C -0.205 4.205 26 C -0.092 4.092 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.265 4.003 17.594 18.088 hybrid contribution -0.559 -0.725 -1.512 1.767 sum -1.824 3.278 16.082 16.514 Atomic orbital electron populations 1.21802 0.92501 1.03088 1.02414 1.21932 0.97139 0.98773 0.87519 0.88391 1.21496 0.79035 0.87851 0.85055 1.90586 1.51332 1.15520 1.84413 1.48298 1.63799 1.09362 1.11681 1.21694 1.00892 0.82417 1.01119 1.19278 0.95182 0.92720 0.80273 1.21367 0.93195 1.34969 1.06820 0.92628 1.24932 0.95900 0.95892 0.97354 1.69926 1.19571 1.41543 1.22406 0.86568 0.82485 0.79284 0.79141 1.20235 1.21144 1.20214 1.62486 1.05551 1.21331 1.34078 1.22229 0.87882 1.00602 0.98050 1.21566 0.99079 0.96201 0.97387 1.21210 0.95175 0.96869 0.97598 0.91233 1.21857 1.00682 1.00710 0.96988 1.21140 0.94499 0.96206 0.97936 0.91172 1.21837 1.00192 0.96909 1.01558 1.22521 0.98556 0.90433 0.97645 0.91689 0.91228 0.91633 0.93100 0.92394 0.91445 0.94053 0.95184 0.92681 0.92389 0.91670 0.91963 0.91655 0.92936 0.92637 0.93084 0.92599 0.92892 0.92590 0.91055 0.90615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.59 37.16 0.32 -1.62 16 2 C 0.06 0.91 2.29 -68.86 -0.16 0.75 16 3 H 0.10 1.34 6.01 -51.93 -0.31 1.03 16 4 C 0.48 9.85 5.93 -10.99 -0.07 9.79 16 5 O -0.54 -13.17 11.91 5.55 0.07 -13.10 16 6 N -0.60 -12.71 2.86 -182.96 -0.52 -13.23 16 7 C 0.08 1.32 10.08 59.85 0.60 1.92 16 8 C 0.24 6.45 5.20 -5.20 -0.03 6.43 16 9 C -0.52 -14.98 9.39 -34.44 -0.32 -15.30 16 10 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 13 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 17 N -0.51 -7.70 4.73 -228.08 -1.08 -8.78 16 18 C 0.04 0.61 4.90 -3.84 -0.02 0.59 16 19 C -0.10 -1.31 5.38 -26.65 -0.14 -1.45 16 20 C -0.09 -1.12 2.29 -90.50 -0.21 -1.33 16 21 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 22 C -0.15 -1.46 8.90 37.16 0.33 -1.13 16 23 C -0.08 -1.00 2.38 -90.54 -0.22 -1.21 16 24 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 25 C -0.15 -1.68 8.90 37.16 0.33 -1.35 16 26 C 0.04 0.55 3.91 -3.83 -0.02 0.53 16 27 H 0.06 0.98 6.19 -51.93 -0.32 0.66 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.89 7.89 -51.93 -0.41 0.48 16 30 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 31 H 0.06 0.73 5.83 -51.93 -0.30 0.42 16 32 H 0.07 1.03 7.89 -51.93 -0.41 0.62 16 33 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 34 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 36 H 0.06 1.09 6.04 -51.92 -0.31 0.77 16 37 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.53 6.52 -51.93 -0.34 0.19 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.55 6.51 -51.93 -0.34 0.21 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.04 5.82 -51.92 -0.30 0.74 16 47 H 0.08 1.45 5.65 -51.93 -0.29 1.15 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -31.87 352.56 -8.52 -40.39 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.33 Total: 0.20 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 0.31 Total: -1.73 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.86 Total: -48.07 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.07 Total: -13.10 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.87 -8.52 -40.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245968631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.741 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds