Wall clock time and date at job start Tue Mar 31 2020 06:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46717 * 2 1 4 4 C 1.50695 * 109.47344 * 119.99779 * 2 1 3 5 5 O 1.21286 * 119.99917 * 94.71888 * 4 2 1 6 6 N 1.34781 * 120.00124 * 274.71970 * 4 2 1 7 7 C 1.46499 * 119.99959 * 4.55649 * 6 4 2 8 8 C 1.46492 * 119.99630 * 184.55566 * 6 4 2 9 9 C 1.50700 * 109.47502 * 269.99797 * 8 6 4 10 10 H 1.08004 * 119.99471 * 0.02562 * 9 8 6 11 11 C 1.37876 * 120.00273 * 180.02562 * 9 8 6 12 12 N 1.31515 * 120.00067 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99841 * 180.27830 * 11 9 8 14 14 H 1.48503 * 109.47116 * 179.72472 * 13 11 9 15 15 H 1.48499 * 109.46990 * 299.71918 * 13 11 9 16 16 H 1.48495 * 109.47315 * 59.72353 * 13 11 9 17 17 N 1.46899 * 109.47286 * 240.00047 * 2 1 3 18 18 C 1.46845 * 110.99917 * 181.56604 * 17 2 1 19 19 C 1.53045 * 109.51960 * 174.16123 * 18 17 2 20 20 C 1.53119 * 109.28003 * 59.18265 * 19 18 17 21 21 H 1.09004 * 109.57110 * 62.27684 * 20 19 18 22 22 C 1.52993 * 109.52262 * 182.43801 * 20 19 18 23 23 C 1.53117 * 109.15763 * 302.34382 * 20 19 18 24 24 H 1.09000 * 109.53724 * 297.69358 * 23 20 19 25 25 C 1.53010 * 109.50184 * 177.59544 * 23 20 19 26 26 C 1.46856 * 110.99936 * 57.35871 * 17 2 1 27 27 H 1.08997 * 109.47672 * 53.05911 * 1 2 3 28 28 H 1.09001 * 109.46863 * 173.05989 * 1 2 3 29 29 H 1.08997 * 109.47466 * 293.05559 * 1 2 3 30 30 H 1.08997 * 109.47060 * 269.88596 * 7 6 4 31 31 H 1.09000 * 109.47187 * 29.88308 * 7 6 4 32 32 H 1.08994 * 109.47033 * 149.88026 * 7 6 4 33 33 H 1.09007 * 109.47230 * 150.00192 * 8 6 4 34 34 H 1.09000 * 109.47603 * 30.00274 * 8 6 4 35 35 H 0.96996 * 119.99792 * 180.02562 * 12 11 9 36 36 H 1.08997 * 109.46251 * 294.17300 * 18 17 2 37 37 H 1.08992 * 109.45925 * 54.14992 * 18 17 2 38 38 H 1.09001 * 109.50287 * 299.23907 * 19 18 17 39 39 H 1.09005 * 109.53300 * 179.14293 * 19 18 17 40 40 H 1.08995 * 109.47043 * 179.68101 * 22 20 19 41 41 H 1.09000 * 109.47168 * 299.68290 * 22 20 19 42 42 H 1.09000 * 109.47279 * 59.68462 * 22 20 19 43 43 H 1.09000 * 109.46705 * 300.19689 * 25 23 20 44 44 H 1.08994 * 109.47066 * 60.19604 * 25 23 20 45 45 H 1.09000 * 109.46696 * 180.19881 * 25 23 20 46 46 H 1.09000 * 109.45926 * 305.85875 * 26 17 2 47 47 H 1.09004 * 109.45958 * 65.83130 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.3160 -1.8884 1.1773 6 7 2.1665 -0.0366 2.3900 7 6 1.7305 1.3591 2.4809 8 6 2.7482 -0.6999 3.5594 9 6 1.6540 -1.3576 4.3601 10 1 0.6278 -1.2886 4.0305 11 6 1.9628 -2.0472 5.5134 12 7 3.2125 -2.1316 5.9144 13 14 0.6072 -2.8690 6.5016 14 1 1.1975 -3.5455 7.6845 15 1 -0.3674 -1.8435 6.9531 16 1 -0.0861 -3.8712 5.6530 17 7 2.0197 -0.6925 -1.1994 18 6 3.4871 -0.7446 -1.2147 19 6 3.9563 -1.5954 -2.3971 20 6 3.4352 -0.9820 -3.6997 21 1 3.8526 0.0171 -3.8254 22 6 3.8498 -1.8617 -4.8808 23 6 1.9078 -0.8945 -3.6381 24 1 1.4884 -1.8970 -3.5529 25 6 1.3826 -0.2276 -4.9111 26 6 1.4979 -0.0640 -2.4199 27 1 -0.3634 0.6176 -0.8213 28 1 -0.3633 -1.0202 -0.1242 29 1 -0.3634 0.4024 0.9455 30 1 2.5587 2.0164 2.2164 31 1 0.9006 1.5260 1.7942 32 1 1.4077 1.5732 3.4997 33 1 3.2587 0.0375 4.1790 34 1 3.4622 -1.4552 3.2310 35 1 3.4297 -2.6171 6.7255 36 1 3.8854 0.2652 -1.3133 37 1 3.8445 -1.1866 -0.2848 38 1 3.5698 -2.6092 -2.2921 39 1 5.0459 -1.6217 -2.4176 40 1 3.4736 -1.4273 -5.8070 41 1 4.9372 -1.9234 -4.9238 42 1 3.4339 -2.8611 -4.7531 43 1 1.8034 0.7743 -4.9964 44 1 1.6748 -0.8195 -5.7785 45 1 0.2955 -0.1624 -4.8651 46 1 0.4106 -0.0117 -2.3650 47 1 1.9057 0.9426 -2.5128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245968634.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:12 Heat of formation + Delta-G solvation = -42.750511 kcal Electronic energy + Delta-G solvation = -23714.865175 eV Core-core repulsion = 20511.177258 eV Total energy + Delta-G solvation = -3203.687916 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.01590 -38.45615 -35.30354 -34.66556 -32.63787 -32.30263 -30.89278 -27.96342 -27.36049 -26.68542 -25.76173 -23.87161 -22.56524 -21.82868 -21.01723 -19.62988 -18.22231 -16.60170 -16.46523 -15.94642 -15.04622 -14.94325 -14.64926 -14.58566 -14.24644 -14.00996 -13.68126 -13.56746 -12.94786 -12.87371 -12.57659 -12.21648 -12.15277 -12.07847 -11.96516 -11.89027 -11.58506 -11.50166 -11.37211 -11.28937 -11.10525 -10.96443 -10.85608 -10.57611 -10.53363 -10.13292 -10.11433 -10.07823 -9.59271 -8.72961 -8.40080 -8.06749 -7.58119 -6.00914 -4.05309 3.34245 3.38660 3.40971 3.46595 3.71996 4.22010 4.47978 4.63646 4.73258 4.76756 4.98975 5.14719 5.30901 5.31857 5.34689 5.36940 5.40987 5.42703 5.47005 5.52218 5.62554 5.64205 5.68062 5.73018 5.82132 5.82266 5.88219 5.92963 5.95481 5.97207 6.12510 6.18201 6.21181 6.22960 6.30500 6.40370 6.50583 7.02308 7.22542 7.28719 7.46459 7.59498 7.95796 8.27214 8.47452 8.94628 9.18123 9.59710 11.07148 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.027714 B = 0.003919 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.072597 B = 7143.589500 C = 7417.356471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.066 3.934 3 H 0.052 0.948 4 C 0.509 3.491 5 O -0.519 6.519 6 N -0.605 5.605 7 C 0.081 3.919 8 C 0.248 3.752 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.896 5.896 13 Si 0.898 3.102 14 H -0.286 1.286 15 H -0.277 1.277 16 H -0.276 1.276 17 N -0.514 5.514 18 C 0.053 3.947 19 C -0.108 4.108 20 C -0.089 4.089 21 H 0.063 0.937 22 C -0.146 4.146 23 C -0.084 4.084 24 H 0.080 0.920 25 C -0.146 4.146 26 C 0.059 3.941 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.263 0.737 36 H 0.024 0.976 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.078 0.922 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 7.981 -19.430 21.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.046 4.046 3 H 0.070 0.930 4 C 0.294 3.706 5 O -0.394 6.394 6 N -0.339 5.339 7 C -0.063 4.063 8 C 0.129 3.871 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.536 5.536 13 Si 0.725 3.275 14 H -0.212 1.212 15 H -0.203 1.203 16 H -0.201 1.201 17 N -0.239 5.239 18 C -0.075 4.075 19 C -0.146 4.146 20 C -0.107 4.107 21 H 0.082 0.918 22 C -0.204 4.204 23 C -0.103 4.103 24 H 0.098 0.902 25 C -0.204 4.204 26 C -0.069 4.069 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.909 6.784 -19.258 20.507 hybrid contribution -0.419 0.537 0.729 0.998 sum -2.328 7.322 -18.529 20.058 Atomic orbital electron populations 1.21812 0.92558 1.03510 1.01977 1.21630 0.97041 0.95596 0.90321 0.92988 1.20078 0.79224 0.87449 0.83866 1.90674 1.49102 1.15056 1.84547 1.48177 1.61421 1.11913 1.12376 1.21685 0.98408 0.83229 1.02984 1.19248 0.94114 0.92845 0.80919 1.21398 0.93913 1.33460 1.07505 0.92530 1.24933 0.95631 0.96105 0.97448 1.69922 1.17173 1.42437 1.24024 0.86566 0.81876 0.79732 0.79289 1.21203 1.20297 1.20142 1.61625 1.09188 1.52850 1.00244 1.22161 0.86921 0.97924 1.00463 1.21602 0.99692 1.00333 0.92938 1.21226 0.95216 0.99126 0.95147 0.91838 1.21856 1.00910 0.99923 0.97669 1.21187 0.95225 1.00315 0.93523 0.90180 1.21845 1.00777 1.00431 0.97362 1.22203 1.00213 0.95074 0.89362 0.92125 0.90859 0.91395 0.94062 0.92376 0.90714 0.95116 0.94070 0.92710 0.95789 0.89366 0.90769 0.91778 0.92700 0.92941 0.92573 0.92991 0.92275 0.92722 0.90407 0.95380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.32 37.16 0.31 -1.65 16 2 C 0.07 1.06 1.64 -68.87 -0.11 0.94 16 3 H 0.05 0.75 7.11 -51.93 -0.37 0.38 16 4 C 0.51 10.85 5.82 -10.99 -0.06 10.79 16 5 O -0.52 -13.40 14.93 5.55 0.08 -13.32 16 6 N -0.61 -13.10 2.86 -182.96 -0.52 -13.62 16 7 C 0.08 1.32 9.80 59.85 0.59 1.90 16 8 C 0.25 6.59 5.13 -5.20 -0.03 6.56 16 9 C -0.52 -15.09 9.39 -34.44 -0.32 -15.42 16 10 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 13 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 N -0.51 -7.89 4.25 -228.07 -0.97 -8.86 16 18 C 0.05 0.81 5.12 -3.83 -0.02 0.79 16 19 C -0.11 -1.39 5.38 -26.65 -0.14 -1.53 16 20 C -0.09 -0.93 2.29 -90.50 -0.21 -1.14 16 21 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 22 C -0.15 -1.31 8.91 37.15 0.33 -0.98 16 23 C -0.08 -0.88 2.38 -90.54 -0.22 -1.10 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 25 C -0.15 -1.21 8.90 37.16 0.33 -0.88 16 26 C 0.06 0.70 4.45 -3.83 -0.02 0.69 16 27 H 0.06 0.66 6.64 -51.93 -0.34 0.31 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.07 0.94 6.68 -51.93 -0.35 0.59 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.79 5.13 -51.93 -0.27 0.52 16 32 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.23 7.49 -51.93 -0.39 0.84 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 1.66 6.04 -51.93 -0.31 1.35 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.43 6.51 -51.93 -0.34 0.09 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.44 6.51 -51.93 -0.34 0.11 16 45 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.08 0.86 6.09 -51.93 -0.32 0.55 16 47 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 357.32 15.07 5.38 5.38 Total: -1.00 -32.76 357.32 -8.46 -41.22 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -8.48 Total: -2.39 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 0.33 Total: 0.65 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.76 Total: -48.70 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.76 -8.46 -41.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245968634.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.532 kcal (2) G-P(sol) polarization free energy of solvation -32.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds