Wall clock time and date at job start Tue Mar 31 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 109.46535 * 2 1 4 4 C 1.50693 * 109.47352 * 240.00364 * 2 1 3 5 5 H 1.08001 * 119.99870 * 273.25224 * 4 2 1 6 6 C 1.37877 * 120.00361 * 93.24641 * 4 2 1 7 7 N 1.31514 * 120.00377 * 181.34884 * 6 4 2 8 8 Si 1.86805 * 119.99614 * 1.35031 * 6 4 2 9 9 H 1.48503 * 109.46955 * 90.62310 * 8 6 4 10 10 H 1.48510 * 109.46771 * 210.61841 * 8 6 4 11 11 H 1.48497 * 109.47422 * 330.61708 * 8 6 4 12 12 N 1.46895 * 109.47221 * 119.99753 * 2 1 3 13 13 C 1.46904 * 110.99857 * 176.04962 * 12 2 1 14 14 C 1.46901 * 111.00320 * 300.00429 * 12 2 1 15 15 C 1.50704 * 109.47068 * 170.00290 * 14 12 2 16 16 O 1.21280 * 120.00087 * 353.94748 * 15 14 12 17 17 N 1.34774 * 119.99880 * 173.95354 * 15 14 12 18 18 C 1.46927 * 120.62997 * 185.30380 * 17 15 14 19 19 H 1.08997 * 109.58627 * 246.19686 * 18 17 15 20 20 C 1.53003 * 109.58707 * 6.62746 * 18 17 15 21 21 C 1.53624 * 108.54207 * 126.36790 * 18 17 15 22 22 C 1.53038 * 109.24480 * 54.85585 * 21 18 17 23 23 C 1.53039 * 109.53896 * 298.51257 * 22 21 18 24 24 C 1.46922 * 120.63054 * 5.58229 * 17 15 14 25 25 H 1.09002 * 109.58915 * 353.37073 * 24 17 15 26 26 C 1.53004 * 109.58720 * 113.66003 * 24 17 15 27 27 H 1.08999 * 109.47247 * 306.99378 * 1 2 3 28 28 H 1.08993 * 109.47312 * 67.00428 * 1 2 3 29 29 H 1.09003 * 109.46432 * 187.00360 * 1 2 3 30 30 H 0.96995 * 120.00100 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47141 * 183.95634 * 13 12 2 32 32 H 1.08998 * 109.47057 * 63.95365 * 13 12 2 33 33 H 1.09000 * 109.47147 * 303.95392 * 13 12 2 34 34 H 1.08998 * 109.47063 * 289.99635 * 14 12 2 35 35 H 1.08991 * 109.47083 * 50.00383 * 14 12 2 36 36 H 1.09004 * 109.47004 * 52.56798 * 20 18 17 37 37 H 1.09001 * 109.47143 * 172.57327 * 20 18 17 38 38 H 1.09002 * 109.46642 * 292.57432 * 20 18 17 39 39 H 1.09006 * 109.63627 * 294.86597 * 21 18 17 40 40 H 1.08996 * 109.45896 * 174.74298 * 21 18 17 41 41 H 1.09005 * 109.46201 * 178.49114 * 22 21 18 42 42 H 1.09004 * 109.44750 * 58.52388 * 22 21 18 43 43 H 1.09006 * 109.50001 * 301.41347 * 23 22 21 44 44 H 1.09003 * 109.52944 * 181.33199 * 23 22 21 45 45 H 1.08998 * 109.46839 * 59.99954 * 26 24 17 46 46 H 1.09007 * 109.47019 * 180.02562 * 26 24 17 47 47 H 1.08999 * 109.46695 * 299.99425 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.1624 -1.7824 -1.2198 6 6 2.3260 0.0084 -2.3698 7 7 2.7391 -0.6143 -3.4520 8 14 2.1370 1.8669 -2.3764 9 1 3.4177 2.4961 -1.9649 10 1 1.7781 2.3231 -3.7433 11 1 1.0651 2.2588 -1.4264 12 7 2.0197 -0.6924 1.1994 13 6 3.4852 -0.7943 1.1870 14 6 1.5487 -0.0264 2.4211 15 6 1.8581 -0.8911 3.6159 16 8 2.3154 -2.0032 3.4575 17 7 1.6266 -0.4287 4.8605 18 6 2.0295 -1.2113 6.0369 19 1 1.1426 -1.5367 6.5805 20 6 2.8368 -2.4315 5.5892 21 6 2.8956 -0.3221 6.9419 22 6 2.1282 0.9598 7.2731 23 6 1.8341 1.7282 5.9827 24 6 0.9609 0.8648 5.0667 25 1 0.8308 1.3658 4.1074 26 6 -0.4053 0.6405 5.7178 27 1 -0.3634 0.6184 0.8208 28 1 -0.3633 0.4014 -0.9459 29 1 -0.3632 -1.0201 0.1253 30 1 2.9453 -0.1087 -4.2537 31 1 3.8165 -1.3719 2.0499 32 1 3.9192 0.2046 1.2300 33 1 3.8071 -1.2913 0.2719 34 1 2.0519 0.9346 2.5281 35 1 0.4723 0.1323 2.3564 36 1 3.6520 -2.1099 4.9410 37 1 3.2458 -2.9374 6.4638 38 1 2.1875 -3.1165 5.0438 39 1 3.8226 -0.0685 6.4274 40 1 3.1257 -0.8568 7.8634 41 1 2.7289 1.5815 7.9371 42 1 1.1898 0.7041 7.7653 43 1 2.7710 1.9625 5.4771 44 1 1.3082 2.6528 6.2209 45 1 -0.2726 0.1441 6.6791 46 1 -0.8976 1.6012 5.8695 47 1 -1.0193 0.0166 5.0683 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246079625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:14 Heat of formation + Delta-G solvation = -19.033438 kcal Electronic energy + Delta-G solvation = -24205.812089 eV Core-core repulsion = 21003.152622 eV Total energy + Delta-G solvation = -3202.659467 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.60152 -37.91579 -36.47092 -33.68073 -32.81235 -32.45781 -30.16510 -29.30225 -27.61241 -26.63507 -24.87331 -23.85347 -23.44626 -21.93831 -20.71346 -19.28553 -18.25687 -17.01096 -16.70503 -16.06705 -15.35560 -15.15047 -14.67734 -14.33597 -14.27737 -13.78349 -13.62566 -13.47293 -13.22845 -12.94573 -12.77872 -12.51560 -12.37164 -12.07161 -11.95713 -11.86549 -11.74271 -11.33633 -11.13823 -11.04260 -11.02927 -10.87842 -10.75748 -10.65426 -10.58591 -10.27814 -10.18324 -9.75890 -9.11301 -8.67670 -8.55829 -8.44308 -7.25335 -6.07005 -4.05326 2.97874 3.01827 3.24604 3.33991 3.34625 4.39475 4.41893 4.56168 4.62652 4.76599 4.83312 4.99042 5.05371 5.13691 5.25222 5.29377 5.30599 5.42467 5.48487 5.65837 5.68443 5.69969 5.71598 5.73499 5.77596 5.84118 5.88454 5.95868 6.11005 6.22468 6.30201 6.30847 6.45517 6.53009 6.56624 6.71303 6.80838 6.86741 7.11508 7.31577 7.56601 7.62783 8.02192 8.11090 8.59635 8.68079 9.05435 9.55972 11.06079 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025490 B = 0.004646 C = 0.004334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.201467 B = 6024.804534 C = 6458.991254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.179 3.821 3 H 0.000 1.000 4 C -0.498 4.498 5 H 0.083 0.917 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.870 3.130 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.512 5.512 13 C 0.038 3.962 14 C 0.030 3.970 15 C 0.517 3.483 16 O -0.507 6.507 17 N -0.615 5.615 18 C 0.146 3.854 19 H 0.065 0.935 20 C -0.137 4.137 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.130 4.130 24 C 0.132 3.868 25 H 0.093 0.907 26 C -0.163 4.163 27 H 0.018 0.982 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.264 0.736 31 H 0.059 0.941 32 H 0.001 0.999 33 H 0.086 0.914 34 H 0.045 0.955 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.038 0.962 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 5.776 22.390 23.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.073 3.927 3 H 0.018 0.982 4 C -0.537 4.537 5 H 0.101 0.899 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.698 3.302 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.189 1.189 12 N -0.236 5.236 13 C -0.110 4.110 14 C -0.102 4.102 15 C 0.306 3.694 16 O -0.381 6.381 17 N -0.351 5.351 18 C 0.043 3.957 19 H 0.083 0.917 20 C -0.194 4.194 21 C -0.170 4.170 22 C -0.157 4.157 23 C -0.168 4.168 24 C 0.028 3.972 25 H 0.111 0.889 26 C -0.222 4.222 27 H 0.037 0.963 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.020 0.980 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.206 4.699 22.054 22.776 hybrid contribution 0.205 2.093 -0.069 2.105 sum -3.001 6.793 21.985 23.205 Atomic orbital electron populations 1.22025 0.98024 1.00447 0.98796 1.19785 0.92127 0.92084 0.88704 0.98244 1.20872 1.43075 0.96333 0.93398 0.89935 1.24980 0.94661 0.97843 0.95562 1.69888 1.45547 1.35718 1.02361 0.86964 0.78916 0.86945 0.77377 1.20508 1.21314 1.18904 1.61875 1.10847 1.51213 0.99705 1.22278 0.87099 0.98321 1.03343 1.22138 1.02291 0.94751 0.91024 1.20860 0.77377 0.87732 0.83438 1.90709 1.42830 1.19548 1.84968 1.48324 1.60664 1.20632 1.05527 1.21252 0.96804 0.91598 0.86044 0.91675 1.22187 1.01149 0.96588 0.99446 1.22088 0.99076 0.96274 0.99523 1.21537 1.00495 0.96552 0.97125 1.21927 1.00383 0.98185 0.96327 1.21267 0.91952 0.84048 0.99900 0.88906 1.22171 0.96229 1.02310 1.01444 0.96271 0.93038 0.92588 0.92637 0.92252 0.98020 0.89558 0.93735 0.88391 0.91458 0.94358 0.90320 0.91524 0.91140 0.91908 0.91614 0.91439 0.90836 0.92057 0.91519 0.92043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.58 37.16 0.32 -2.56 16 2 C 0.18 4.27 1.61 -68.87 -0.11 4.16 16 3 H 0.00 0.00 5.45 -51.93 -0.28 -0.28 16 4 C -0.50 -13.98 7.41 -34.44 -0.26 -14.24 16 5 H 0.08 2.59 8.02 -52.49 -0.42 2.17 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 8 Si 0.87 21.27 26.71 -169.99 -4.54 16.73 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.26 -6.12 6.60 56.52 0.37 -5.75 16 12 N -0.51 -11.23 4.32 -237.73 -1.03 -12.26 16 13 C 0.04 0.82 8.95 60.07 0.54 1.36 16 14 C 0.03 0.52 3.62 -4.97 -0.02 0.50 16 15 C 0.52 8.61 7.10 -10.98 -0.08 8.54 16 16 O -0.51 -9.94 10.18 5.56 0.06 -9.88 16 17 N -0.61 -7.85 2.67 -157.47 -0.42 -8.27 16 18 C 0.15 1.66 3.10 -67.37 -0.21 1.46 16 19 H 0.07 0.69 7.48 -51.93 -0.39 0.30 16 20 C -0.14 -1.81 7.62 37.16 0.28 -1.53 16 21 C -0.13 -1.21 5.40 -26.39 -0.14 -1.35 16 22 C -0.12 -0.92 5.68 -26.69 -0.15 -1.08 16 23 C -0.13 -1.09 5.56 -26.61 -0.15 -1.24 16 24 C 0.13 1.32 3.12 -67.60 -0.21 1.11 16 25 H 0.09 0.96 5.92 -51.93 -0.31 0.65 16 26 C -0.16 -1.37 9.03 37.16 0.34 -1.04 16 27 H 0.02 0.34 6.58 -51.93 -0.34 0.00 16 28 H 0.05 1.12 7.80 -51.93 -0.41 0.71 16 29 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.06 1.24 6.10 -51.93 -0.32 0.92 16 32 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 33 H 0.09 2.09 6.80 -51.93 -0.35 1.74 16 34 H 0.04 0.73 7.62 -51.93 -0.40 0.34 16 35 H 0.10 1.59 5.82 -51.93 -0.30 1.29 16 36 H 0.07 1.04 6.82 -51.93 -0.35 0.69 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 1.23 6.67 -51.93 -0.35 0.88 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.47 6.50 -51.93 -0.34 0.13 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.49 5.73 -51.93 -0.30 0.19 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -31.31 343.95 -8.16 -39.47 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.24 Total: -0.51 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 0.05 Total: -3.96 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: -0.68 Total: -47.03 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.06 Total: -9.88 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.54 Total: 16.73 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.31 -8.16 -39.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246079625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.439 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds