Wall clock time and date at job start Tue Mar 31 2020 06:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47369 * 2 1 4 4 C 1.50703 * 109.47174 * 240.00078 * 2 1 3 5 5 H 1.07999 * 119.99939 * 240.00223 * 4 2 1 6 6 C 1.37869 * 120.00217 * 60.00246 * 4 2 1 7 7 N 1.31520 * 119.99694 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00364 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46777 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47310 * 120.00093 * 8 6 4 11 11 H 1.48497 * 109.46913 * 240.00088 * 8 6 4 12 12 N 1.46903 * 109.46972 * 120.00095 * 2 1 3 13 13 C 1.46893 * 111.00143 * 176.04374 * 12 2 1 14 14 C 1.46895 * 111.00130 * 300.00138 * 12 2 1 15 15 C 1.50694 * 109.47422 * 170.00065 * 14 12 2 16 16 O 1.21280 * 120.00155 * 359.97438 * 15 14 12 17 17 N 1.34783 * 120.00177 * 179.97438 * 15 14 12 18 18 C 1.46921 * 120.62731 * 353.92686 * 17 15 14 19 19 H 1.08994 * 109.59215 * 6.62657 * 18 17 15 20 20 C 1.52999 * 109.58566 * 246.19959 * 18 17 15 21 21 C 1.53625 * 108.54433 * 126.37135 * 18 17 15 22 22 C 1.53044 * 109.24018 * 54.85241 * 21 18 17 23 23 C 1.53038 * 109.53762 * 298.51253 * 22 21 18 24 24 C 1.46927 * 120.62919 * 174.20443 * 17 15 14 25 25 H 1.09001 * 109.58415 * 113.79846 * 24 17 15 26 26 C 1.52995 * 109.58747 * 353.37634 * 24 17 15 27 27 H 1.08997 * 109.47126 * 300.00536 * 1 2 3 28 28 H 1.09003 * 109.46510 * 59.99687 * 1 2 3 29 29 H 1.08992 * 109.47622 * 179.97438 * 1 2 3 30 30 H 0.96998 * 119.99596 * 180.02562 * 7 6 4 31 31 H 1.09003 * 109.47218 * 60.00177 * 13 12 2 32 32 H 1.09004 * 109.47439 * 179.97438 * 13 12 2 33 33 H 1.08997 * 109.47385 * 300.00197 * 13 12 2 34 34 H 1.09007 * 109.46961 * 289.99967 * 14 12 2 35 35 H 1.09006 * 109.47140 * 49.99610 * 14 12 2 36 36 H 1.09000 * 109.47136 * 60.00561 * 20 18 17 37 37 H 1.09002 * 109.47426 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.47228 * 300.00465 * 20 18 17 39 39 H 1.09004 * 109.63499 * 294.86466 * 21 18 17 40 40 H 1.08998 * 109.46424 * 174.73554 * 21 18 17 41 41 H 1.09005 * 109.45575 * 178.49260 * 22 21 18 42 42 H 1.08991 * 109.46260 * 58.53540 * 22 21 18 43 43 H 1.09001 * 109.49744 * 301.41219 * 23 22 21 44 44 H 1.09007 * 109.52244 * 181.33882 * 23 22 21 45 45 H 1.08999 * 109.47742 * 65.79266 * 26 24 17 46 46 H 1.09005 * 109.47239 * 185.79360 * 26 24 17 47 47 H 1.09002 * 109.47175 * 305.78797 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8303 -2.6033 8 14 2.3214 -1.1203 -4.0080 9 1 3.1465 -2.2870 -3.6037 10 1 1.1662 -1.5865 -4.8161 11 1 3.1467 -0.1873 -4.8164 12 7 2.0196 -0.6925 1.1995 13 6 3.4849 -0.7947 1.1871 14 6 1.5486 -0.0265 2.4211 15 6 1.8578 -0.8912 3.6159 16 8 2.4153 -1.9576 3.4646 17 7 1.5149 -0.4795 4.8526 18 6 0.9606 0.8641 5.0674 19 1 0.7871 1.3459 4.1052 20 6 1.9427 1.6983 5.8923 21 6 -0.3689 0.7288 5.8250 22 6 -0.1378 -0.0684 7.1108 23 6 0.3614 -1.4719 6.7601 24 6 1.6940 -1.3636 6.0124 25 1 2.4523 -0.9473 6.6755 26 6 2.1299 -2.7510 5.5372 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.7091 1.1614 -3.4843 31 1 3.9186 0.2050 1.1592 32 1 3.8208 -1.3110 2.0864 33 1 3.8029 -1.3532 0.3068 34 1 2.0519 0.9345 2.5281 35 1 0.4721 0.1323 2.3563 36 1 2.8895 1.7781 5.3581 37 1 1.5296 2.6944 6.0509 38 1 2.1087 1.2165 6.8558 39 1 -1.0953 0.2088 5.2002 40 1 -0.7473 1.7200 6.0746 41 1 -1.0737 -0.1436 7.6646 42 1 0.6068 0.4392 7.7239 43 1 -0.3718 -1.9711 6.1266 44 1 0.5033 -2.0473 7.6751 45 1 3.1197 -2.6861 5.0853 46 1 2.1626 -3.4326 6.3873 47 1 1.4179 -3.1231 4.8005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246079633.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:16 Heat of formation + Delta-G solvation = -17.814250 kcal Electronic energy + Delta-G solvation = -24116.665736 eV Core-core repulsion = 20914.059137 eV Total energy + Delta-G solvation = -3202.606599 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.53714 -37.83890 -36.31352 -33.65099 -32.76196 -32.57324 -29.49912 -29.03286 -27.57046 -26.57571 -24.84304 -23.70218 -23.35763 -21.92068 -20.70045 -19.42212 -18.12963 -16.79434 -16.13984 -16.02661 -15.40863 -14.97910 -14.76593 -14.22230 -14.16243 -13.73194 -13.71058 -13.37670 -13.13194 -12.89400 -12.70553 -12.34785 -12.24431 -11.91356 -11.78324 -11.68825 -11.54175 -11.08149 -11.06612 -10.99375 -10.92628 -10.74126 -10.65450 -10.57436 -10.50554 -10.12750 -10.01034 -9.89085 -8.89287 -8.56436 -8.39701 -8.37314 -7.09871 -5.99387 -4.02642 3.03962 3.08688 3.32428 3.40131 3.46191 4.43077 4.49963 4.63653 4.68818 4.84638 4.97040 5.05512 5.17470 5.21393 5.30220 5.34105 5.35708 5.49024 5.54178 5.71191 5.75042 5.77030 5.84156 5.84855 5.86486 5.90748 5.94307 6.01356 6.16554 6.34939 6.38086 6.49060 6.56246 6.80364 6.86081 6.96156 7.03686 7.16794 7.49547 7.62099 7.75313 7.87075 8.21908 8.34231 8.57715 8.69058 9.04687 9.62261 11.07864 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028684 B = 0.004209 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.911581 B = 6650.089735 C = 7067.944186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.212 3.788 3 H -0.002 1.002 4 C -0.499 4.499 5 H 0.065 0.935 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.519 5.519 13 C 0.036 3.964 14 C 0.033 3.967 15 C 0.518 3.482 16 O -0.511 6.511 17 N -0.614 5.614 18 C 0.132 3.868 19 H 0.095 0.905 20 C -0.163 4.163 21 C -0.130 4.130 22 C -0.120 4.120 23 C -0.132 4.132 24 C 0.146 3.854 25 H 0.064 0.936 26 C -0.137 4.137 27 H 0.006 0.994 28 H 0.087 0.913 29 H 0.036 0.964 30 H 0.259 0.741 31 H 0.003 0.997 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.100 0.900 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 1.741 19.889 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.106 3.894 3 H 0.016 0.984 4 C -0.537 4.537 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.244 5.244 13 C -0.112 4.112 14 C -0.099 4.099 15 C 0.307 3.693 16 O -0.386 6.386 17 N -0.351 5.351 18 C 0.028 3.972 19 H 0.113 0.887 20 C -0.221 4.221 21 C -0.168 4.168 22 C -0.157 4.157 23 C -0.170 4.170 24 C 0.043 3.957 25 H 0.082 0.918 26 C -0.194 4.194 27 H 0.024 0.976 28 H 0.105 0.895 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.022 0.978 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.118 0.882 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.056 0.944 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.542 0.778 19.615 19.691 hybrid contribution 0.447 0.625 -0.798 1.108 sum -1.095 1.403 18.816 18.900 Atomic orbital electron populations 1.21870 0.97787 0.99774 0.99731 1.19307 0.92283 0.91954 0.85862 0.98424 1.21194 1.30758 1.12220 0.89563 0.91650 1.24923 0.95250 0.95107 0.99014 1.69901 1.37197 1.23146 1.23263 0.86451 0.78594 0.79655 0.82804 1.19678 1.21044 1.21188 1.61872 1.10211 1.51786 1.00510 1.22318 0.87892 0.98523 1.02510 1.22082 1.02477 0.94628 0.90703 1.20942 0.77670 0.87202 0.83450 1.90672 1.40130 1.22889 1.84867 1.48327 1.65095 1.14915 1.06784 1.21361 0.92856 0.82921 1.00038 0.88723 1.22160 0.99695 0.99656 1.00585 1.22005 0.96935 1.00810 0.97086 1.21538 1.01147 0.95766 0.97259 1.22015 0.97566 0.97158 1.00254 1.21147 0.96019 0.91506 0.87023 0.91835 1.22200 1.04377 0.93420 0.99449 0.97554 0.89489 0.94529 0.93098 0.97842 0.92037 0.90733 0.93694 0.88224 0.92234 0.91478 0.92099 0.91213 0.90855 0.91904 0.91704 0.91427 0.91190 0.90241 0.94440 0.91459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.76 37.16 0.33 -2.93 16 2 C 0.21 5.43 2.06 -68.86 -0.14 5.28 16 3 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 4 C -0.50 -13.95 7.93 -34.44 -0.27 -14.22 16 5 H 0.07 1.86 6.39 -52.49 -0.34 1.52 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.55 11.32 55.43 0.63 -24.92 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 N -0.52 -11.84 4.36 -237.73 -1.04 -12.88 16 13 C 0.04 0.78 8.88 60.06 0.53 1.32 16 14 C 0.03 0.61 3.62 -4.98 -0.02 0.59 16 15 C 0.52 8.97 7.19 -10.99 -0.08 8.89 16 16 O -0.51 -10.20 9.90 5.56 0.06 -10.14 16 17 N -0.61 -8.22 2.68 -157.49 -0.42 -8.64 16 18 C 0.13 1.41 3.14 -67.38 -0.21 1.20 16 19 H 0.09 1.07 5.93 -51.93 -0.31 0.76 16 20 C -0.16 -1.47 9.03 37.16 0.34 -1.13 16 21 C -0.13 -1.17 5.58 -26.38 -0.15 -1.32 16 22 C -0.12 -0.98 5.68 -26.69 -0.15 -1.13 16 23 C -0.13 -1.27 5.37 -26.62 -0.14 -1.42 16 24 C 0.15 1.73 3.07 -67.60 -0.21 1.52 16 25 H 0.06 0.70 7.48 -51.93 -0.39 0.31 16 26 C -0.14 -1.87 7.61 37.16 0.28 -1.59 16 27 H 0.01 0.12 6.20 -51.93 -0.32 -0.20 16 28 H 0.09 2.31 6.07 -51.93 -0.32 2.00 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 32 H 0.06 1.29 5.83 -51.93 -0.30 0.99 16 33 H 0.07 1.72 6.23 -51.93 -0.32 1.40 16 34 H 0.05 0.79 7.67 -51.93 -0.40 0.39 16 35 H 0.10 1.79 5.62 -51.93 -0.29 1.50 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.51 5.71 -51.93 -0.30 0.22 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.49 6.49 -51.93 -0.34 0.15 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 45 H 0.08 1.25 6.54 -51.93 -0.34 0.92 16 46 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 1.08 6.96 -51.93 -0.36 0.72 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -30.30 343.35 -8.72 -39.02 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -8.11 Total: -0.82 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 0.01 Total: -3.43 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.83 Total: -46.44 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.06 Total: -10.14 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.30 -8.72 -39.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246079633.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.207 kcal (2) G-P(sol) polarization free energy of solvation -30.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds