Wall clock time and date at job start Tue Mar 31 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47227 * 2 1 4 4 C 1.50704 * 109.47042 * 240.00595 * 2 1 3 5 5 H 1.07997 * 119.99623 * 274.50598 * 4 2 1 6 6 C 1.37868 * 120.00029 * 94.50682 * 4 2 1 7 7 N 1.31517 * 119.99880 * 184.06722 * 6 4 2 8 8 Si 1.86794 * 120.00385 * 4.06653 * 6 4 2 9 9 H 1.48504 * 109.47393 * 93.91611 * 8 6 4 10 10 H 1.48504 * 109.47364 * 213.91605 * 8 6 4 11 11 H 1.48503 * 109.47315 * 333.91737 * 8 6 4 12 12 N 1.46893 * 109.47368 * 120.00286 * 2 1 3 13 13 C 1.46907 * 111.00211 * 176.04749 * 12 2 1 14 14 C 1.46904 * 111.00273 * 299.99728 * 12 2 1 15 15 C 1.50701 * 109.47287 * 169.99786 * 14 12 2 16 16 O 1.21277 * 119.99898 * 9.44883 * 15 14 12 17 17 N 1.34778 * 119.99675 * 189.44520 * 15 14 12 18 18 C 1.46924 * 120.63288 * 338.80080 * 17 15 14 19 19 H 1.08998 * 109.58365 * 113.54565 * 18 17 15 20 20 C 1.52998 * 109.58615 * 353.26423 * 18 17 15 21 21 C 1.53187 * 108.77589 * 233.33677 * 18 17 15 22 22 C 1.53041 * 109.31189 * 305.36373 * 21 18 17 23 23 C 1.53039 * 109.53903 * 61.36832 * 22 21 18 24 24 C 1.46926 * 120.62590 * 158.52199 * 17 15 14 25 25 H 1.09005 * 109.58751 * 246.44914 * 24 17 15 26 26 C 1.52996 * 109.58944 * 6.87932 * 24 17 15 27 27 H 1.09004 * 109.46854 * 306.65436 * 1 2 3 28 28 H 1.09003 * 109.47018 * 66.65330 * 1 2 3 29 29 H 1.09001 * 109.46721 * 186.65688 * 1 2 3 30 30 H 0.97003 * 120.00168 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.46865 * 183.95398 * 13 12 2 32 32 H 1.09001 * 109.46502 * 303.94996 * 13 12 2 33 33 H 1.09000 * 109.47179 * 63.95303 * 13 12 2 34 34 H 1.09007 * 109.46752 * 50.00138 * 14 12 2 35 35 H 1.09001 * 109.47327 * 290.00455 * 14 12 2 36 36 H 1.09002 * 109.47295 * 69.28204 * 20 18 17 37 37 H 1.09001 * 109.47418 * 189.27462 * 20 18 17 38 38 H 1.09001 * 109.47238 * 309.28371 * 20 18 17 39 39 H 1.08997 * 109.50050 * 65.31526 * 21 18 17 40 40 H 1.08997 * 109.49854 * 185.41654 * 21 18 17 41 41 H 1.09004 * 109.46363 * 181.39011 * 22 21 18 42 42 H 1.09004 * 109.46363 * 301.34667 * 22 21 18 43 43 H 1.08999 * 109.49740 * 58.58423 * 23 22 21 44 44 H 1.08998 * 109.49880 * 178.68523 * 23 22 21 45 45 H 1.08999 * 109.47427 * 60.07830 * 26 24 17 46 46 H 1.08997 * 109.47406 * 180.08330 * 26 24 17 47 47 H 1.08999 * 109.46924 * 300.08338 * 26 24 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1430 -1.7846 -1.2265 6 6 2.3505 0.0113 -2.3614 7 7 2.7123 -0.6141 -3.4604 8 14 2.2680 1.8772 -2.3328 9 1 3.6085 2.4272 -2.0074 10 1 1.8391 2.3743 -3.6648 11 1 1.2907 2.3138 -1.3034 12 7 2.0197 -0.6925 1.1993 13 6 3.4852 -0.7945 1.1869 14 6 1.5488 -0.0265 2.4211 15 6 1.8581 -0.8913 3.6158 16 8 2.5630 -1.8700 3.4897 17 7 1.3513 -0.5769 4.8245 18 6 0.9040 0.7919 5.1157 19 1 -0.1761 0.7999 5.2620 20 6 1.2703 1.7105 3.9483 21 6 1.5987 1.2767 6.3920 22 6 1.3384 0.2768 7.5210 23 6 1.9213 -1.0865 7.1418 24 6 1.2302 -1.5981 5.8739 25 1 0.1766 -1.7849 6.0821 26 6 1.9018 -2.8922 5.4104 27 1 -0.3633 0.6135 0.8245 28 1 -0.3633 0.4073 -0.9436 29 1 -0.3633 -1.0208 0.1191 30 1 2.9365 -0.1064 -4.2559 31 1 3.8164 -1.3721 2.0498 32 1 3.8069 -1.2915 0.2717 33 1 3.9193 0.2044 1.2300 34 1 0.4723 0.1323 2.3564 35 1 2.0519 0.9345 2.5280 36 1 0.6591 1.4582 3.0818 37 1 1.0890 2.7474 4.2311 38 1 2.3237 1.5803 3.7002 39 1 2.6714 1.3545 6.2152 40 1 1.2040 2.2531 6.6727 41 1 1.8111 0.6319 8.4368 42 1 0.2644 0.1808 7.6807 43 1 2.9910 -0.9863 6.9579 44 1 1.7561 -1.7920 7.9561 45 1 2.9565 -2.7030 5.2107 46 1 1.8095 -3.6488 6.1895 47 1 1.4178 -3.2469 4.5004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246079640.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:19 Heat of formation + Delta-G solvation = 25.536295 kcal Electronic energy + Delta-G solvation = -24414.567888 eV Core-core repulsion = 21213.841110 eV Total energy + Delta-G solvation = -3200.726778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.80385 -37.74043 -36.58526 -34.47688 -32.82641 -32.39486 -30.08708 -29.14319 -28.38247 -26.11907 -24.98451 -23.93976 -22.58180 -21.67832 -21.08574 -19.22550 -19.03054 -17.01742 -16.61829 -16.02580 -15.47313 -14.84403 -14.55822 -14.38292 -14.34572 -14.15433 -13.75228 -13.46165 -13.09966 -12.84638 -12.63660 -12.47615 -12.38885 -11.97944 -11.92483 -11.82594 -11.57787 -11.12498 -11.10221 -11.02448 -10.98575 -10.78069 -10.71970 -10.57283 -10.51683 -10.26972 -9.90999 -9.74516 -9.07883 -8.71853 -8.54914 -8.34800 -7.09833 -6.05915 -4.03744 2.90832 3.03491 3.25251 3.34491 3.34774 4.40456 4.46060 4.51287 4.61778 4.77563 4.86707 4.98827 5.08955 5.10313 5.23982 5.31137 5.36036 5.42085 5.50585 5.61897 5.64711 5.72333 5.74761 5.77996 5.84730 5.87091 5.94187 6.00141 6.08607 6.26193 6.29453 6.36117 6.47949 6.56230 6.59926 6.74769 6.83444 6.92756 7.17701 7.34792 7.60000 7.65311 8.08260 8.17014 8.57915 8.70587 9.06713 9.57486 11.07272 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028308 B = 0.004760 C = 0.004367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.865224 B = 5880.756856 C = 6410.080891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.178 3.822 3 H 0.002 0.998 4 C -0.497 4.497 5 H 0.081 0.919 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.870 3.130 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.264 1.264 12 N -0.522 5.522 13 C 0.032 3.968 14 C -0.001 4.001 15 C 0.525 3.475 16 O -0.505 6.505 17 N -0.626 5.626 18 C 0.146 3.854 19 H 0.072 0.928 20 C -0.194 4.194 21 C -0.130 4.130 22 C -0.119 4.119 23 C -0.131 4.131 24 C 0.148 3.852 25 H 0.066 0.934 26 C -0.142 4.142 27 H 0.018 0.982 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.263 0.737 31 H 0.071 0.929 32 H 0.081 0.919 33 H -0.002 1.002 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.042 0.958 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 5.133 22.011 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.071 3.929 3 H 0.020 0.980 4 C -0.535 4.535 5 H 0.099 0.901 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.697 3.303 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.188 1.188 12 N -0.247 5.247 13 C -0.115 4.115 14 C -0.131 4.131 15 C 0.314 3.686 16 O -0.379 6.379 17 N -0.364 5.364 18 C 0.042 3.958 19 H 0.090 0.910 20 C -0.251 4.251 21 C -0.168 4.168 22 C -0.157 4.157 23 C -0.170 4.170 24 C 0.045 3.955 25 H 0.084 0.916 26 C -0.199 4.199 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.016 0.984 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.060 0.940 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.053 4.135 21.696 22.456 hybrid contribution 0.184 1.976 -0.041 1.985 sum -3.869 6.111 21.655 22.831 Atomic orbital electron populations 1.22011 0.98170 1.00346 0.98679 1.19824 0.92018 0.92282 0.88763 0.98021 1.20877 1.42814 0.96064 0.93770 0.90053 1.24991 0.94805 0.97855 0.95450 1.69900 1.46343 1.35536 1.01798 0.86955 0.78733 0.87125 0.77443 1.20509 1.21318 1.18829 1.61860 1.10948 1.51854 1.00028 1.22395 0.87052 0.98348 1.03751 1.23755 1.02166 0.96499 0.90706 1.20893 0.78523 0.85985 0.83230 1.90629 1.33996 1.28726 1.84568 1.48278 1.65686 1.09618 1.12812 1.21066 0.98300 0.81500 0.94887 0.91003 1.23357 1.03059 0.99514 0.99159 1.21976 1.01469 0.98714 0.94636 1.21513 1.01044 0.95187 0.97911 1.22014 1.00822 0.96819 0.97324 1.21160 0.98908 0.88526 0.86894 0.91647 1.22212 1.03310 0.94174 1.00230 0.96322 0.93119 0.92736 0.92683 0.91052 0.89983 0.98365 0.88253 0.90024 0.89027 0.91414 0.90813 0.91452 0.90883 0.91849 0.91879 0.91464 0.91151 0.90212 0.93968 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.76 37.16 0.33 -2.51 16 2 C 0.18 4.21 1.67 -68.87 -0.11 4.09 16 3 H 0.00 0.05 5.15 -51.93 -0.27 -0.21 16 4 C -0.50 -13.95 7.40 -34.44 -0.25 -14.20 16 5 H 0.08 2.56 8.04 -52.49 -0.42 2.14 16 6 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 8 Si 0.87 21.23 27.25 -169.99 -4.63 16.60 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.26 -6.07 6.45 56.52 0.36 -5.71 16 12 N -0.52 -11.39 4.43 -237.72 -1.05 -12.44 16 13 C 0.03 0.71 8.95 60.07 0.54 1.25 16 14 C 0.00 -0.02 2.89 -4.97 -0.01 -0.03 16 15 C 0.52 8.70 6.75 -10.98 -0.07 8.63 16 16 O -0.51 -9.83 9.78 5.56 0.05 -9.78 16 17 N -0.63 -8.07 2.97 -157.73 -0.47 -8.54 16 18 C 0.15 1.47 3.45 -67.60 -0.23 1.24 16 19 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 20 C -0.19 -2.02 7.07 37.16 0.26 -1.76 16 21 C -0.13 -1.09 5.37 -26.61 -0.14 -1.23 16 22 C -0.12 -0.93 5.88 -26.69 -0.16 -1.08 16 23 C -0.13 -1.22 5.37 -26.61 -0.14 -1.36 16 24 C 0.15 1.71 3.49 -67.60 -0.24 1.47 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 C -0.14 -1.90 7.63 37.16 0.28 -1.61 16 27 H 0.02 0.32 6.56 -51.93 -0.34 -0.02 16 28 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 31 H 0.07 1.52 5.56 -51.93 -0.29 1.23 16 32 H 0.08 2.01 6.81 -51.93 -0.35 1.65 16 33 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 34 H 0.10 1.60 4.62 -51.92 -0.24 1.36 16 35 H 0.08 1.30 4.16 -52.47 -0.22 1.08 16 36 H 0.09 1.05 4.62 -51.93 -0.24 0.81 16 37 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 38 H 0.07 0.88 5.99 -51.93 -0.31 0.56 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 1.23 6.62 -51.93 -0.34 0.88 16 46 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 1.08 6.95 -51.93 -0.36 0.72 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -31.38 338.44 -8.34 -39.72 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -8.05 Total: 1.11 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -0.06 Total: -5.19 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.75 Total: -47.56 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.05 Total: -9.78 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.63 Total: 16.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.38 -8.34 -39.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246079640.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.253 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds