Wall clock time and date at job start Tue Mar 31 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46976 * 2 1 4 4 C 1.52998 * 109.47161 * 239.99965 * 2 1 3 5 5 C 1.53003 * 109.47161 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.46859 * 59.99914 * 5 4 2 7 7 C 1.52998 * 109.47304 * 299.99998 * 6 5 4 8 8 H 1.08995 * 109.47204 * 300.00292 * 7 6 5 9 9 C 1.52999 * 109.47304 * 179.97438 * 7 6 5 10 10 C 1.52999 * 109.46859 * 119.99879 * 2 1 3 11 11 H 1.08995 * 109.47228 * 60.00275 * 10 2 1 12 12 N 1.46490 * 109.47255 * 300.00056 * 10 2 1 13 13 C 1.34773 * 120.00326 * 84.99958 * 12 10 2 14 14 O 1.21591 * 120.00000 * 359.97438 * 13 12 10 15 15 N 1.34777 * 120.00462 * 179.97438 * 13 12 10 16 16 C 1.46500 * 120.00376 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47473 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46828 * 90.00241 * 23 21 19 25 25 H 1.48494 * 109.47178 * 209.99936 * 23 21 19 26 26 H 1.48500 * 109.47075 * 330.00183 * 23 21 19 27 27 H 1.09000 * 109.47026 * 299.99947 * 1 2 3 28 28 H 1.09002 * 109.46748 * 60.00078 * 1 2 3 29 29 H 1.08999 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47325 * 60.00310 * 4 2 1 31 31 H 1.08999 * 109.47320 * 300.00394 * 4 2 1 32 32 H 1.08995 * 109.46976 * 300.00035 * 5 4 2 33 33 H 1.09000 * 109.47026 * 180.02562 * 5 4 2 34 34 H 1.09002 * 109.47093 * 179.97438 * 6 5 4 35 35 H 1.09004 * 109.47422 * 60.00342 * 6 5 4 36 36 H 1.09004 * 109.47422 * 300.00344 * 9 7 6 37 37 H 1.09002 * 109.47093 * 59.99813 * 9 7 6 38 38 H 1.09000 * 109.47443 * 179.97438 * 9 7 6 39 39 H 0.97004 * 120.00364 * 264.99951 * 12 10 2 40 40 H 0.97004 * 120.00228 * 0.02562 * 15 13 12 41 41 H 1.09002 * 109.47129 * 59.99747 * 16 15 13 42 42 H 1.08998 * 109.46845 * 300.00553 * 16 15 13 43 43 H 1.09002 * 109.47153 * 59.99757 * 17 16 15 44 44 H 1.09001 * 109.46832 * 299.99948 * 17 16 15 45 45 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 46 46 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 47 47 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5701 -0.7218 -1.2489 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7222 1.2496 8 1 3.9331 0.3053 1.2498 9 6 4.0783 -1.4441 2.4989 10 6 2.0400 -0.7212 1.2493 11 1 1.6767 -1.7489 1.2493 12 7 1.5516 -0.0307 2.4453 13 6 0.3297 -0.3164 2.9368 14 8 -0.3677 -1.1471 2.3872 15 7 -0.1194 0.3185 4.0376 16 6 -1.4475 0.0075 4.5721 17 6 -1.7101 0.8612 5.8143 18 6 -3.0968 0.5359 6.3729 19 6 -3.3557 1.3773 7.5961 20 1 -2.6059 2.0740 7.9408 21 6 -4.5497 1.2576 8.2750 22 7 -5.4629 0.4095 7.8550 23 14 -4.8703 2.3000 9.7916 24 1 -5.5136 3.5762 9.3881 25 1 -5.7684 1.5641 10.7173 26 1 -3.5839 2.5885 10.4750 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6768 -0.2074 -2.1392 31 1 1.6767 -1.7489 -1.2493 32 1 3.9337 0.3057 -1.2487 33 1 3.9334 -1.2352 -2.1391 34 1 5.1695 -1.4442 0.0004 35 1 3.7158 -2.4710 0.0002 36 1 3.7143 -2.4716 2.4984 37 1 5.1684 -1.4450 2.4993 38 1 3.7154 -0.9301 3.3889 39 1 2.1077 0.6323 2.8837 40 1 0.4367 0.9815 4.4759 41 1 -1.4932 -1.0481 4.8400 42 1 -2.2029 0.2237 3.8167 43 1 -1.6644 1.9167 5.5460 44 1 -0.9546 0.6454 6.5698 45 1 -3.8525 0.7514 5.6175 46 1 -3.1420 -0.5195 6.6412 47 1 -6.3031 0.3255 8.3324 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246098008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:59 Heat of formation + Delta-G solvation = -76.543201 kcal Electronic energy + Delta-G solvation = -22649.794374 eV Core-core repulsion = 19444.641096 eV Total energy + Delta-G solvation = -3205.153277 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.51266 -38.63058 -35.39476 -34.18139 -33.61681 -33.23706 -31.37722 -30.28434 -27.00990 -26.43217 -25.96301 -23.15797 -21.91696 -21.01463 -20.64406 -20.32663 -20.07574 -17.86616 -16.70712 -16.16255 -15.73998 -15.07866 -14.87610 -14.59146 -14.43410 -14.32875 -14.07230 -13.74537 -13.42570 -12.96710 -12.64577 -12.45829 -12.33208 -12.26235 -11.93831 -11.78051 -11.67138 -11.39056 -11.22024 -10.98072 -10.89638 -10.71684 -10.68995 -10.59807 -10.57516 -10.32879 -9.93269 -9.83064 -9.40719 -9.10711 -8.97957 -8.52302 -8.35891 -6.00503 -4.03532 2.89581 3.31456 3.37793 3.40611 3.45957 4.30994 4.35839 4.44836 4.47103 4.62326 4.79258 4.88709 5.11689 5.14237 5.16956 5.21842 5.35211 5.41311 5.45265 5.61702 5.65550 5.69566 5.72313 5.79295 5.83209 5.85146 5.91186 5.93670 5.96292 6.07257 6.11775 6.21991 6.26635 6.48560 6.59920 6.64657 6.65711 6.86583 7.05988 7.16287 7.65617 7.78815 7.98650 8.24206 8.39672 8.85917 9.03269 9.60511 11.10819 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038725 B = 0.002638 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.880938 B =10610.704418 C =10993.568592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.111 4.111 7 C -0.098 4.098 8 H 0.073 0.927 9 C -0.147 4.147 10 C 0.175 3.825 11 H 0.087 0.913 12 N -0.746 5.746 13 C 0.700 3.300 14 O -0.588 6.588 15 N -0.744 5.744 16 C 0.136 3.864 17 C -0.120 4.120 18 C 0.024 3.976 19 C -0.522 4.522 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.057 0.943 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.391 0.609 40 H 0.392 0.608 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.410 -1.118 -16.851 27.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 H 0.084 0.916 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.149 4.149 7 C -0.117 4.117 8 H 0.091 0.909 9 C -0.204 4.204 10 C 0.069 3.931 11 H 0.105 0.895 12 N -0.401 5.401 13 C 0.400 3.600 14 O -0.466 6.466 15 N -0.399 5.399 16 C 0.013 3.987 17 C -0.158 4.158 18 C -0.014 4.014 19 C -0.560 4.560 20 H 0.073 0.927 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.225 0.775 40 H 0.225 0.775 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 20.541 -1.983 -17.295 26.925 hybrid contribution 0.213 1.258 1.312 1.831 sum 20.754 -0.725 -15.983 26.205 Atomic orbital electron populations 1.21831 0.93980 1.02772 1.00830 1.21556 0.96861 0.99316 0.94320 0.91581 1.21585 0.95037 1.01060 0.97428 1.21571 0.95932 1.00695 0.97678 1.21552 1.00267 0.99573 0.93466 1.21394 0.94321 1.00345 0.95674 0.90864 1.21817 1.00544 1.00829 0.97206 1.20825 0.92073 0.97048 0.83114 0.89502 1.45185 1.17438 1.46097 1.31357 1.15971 0.81546 0.81737 0.80702 1.90921 1.57072 1.36970 1.61632 1.45411 1.20391 1.44753 1.29301 1.21470 0.81109 1.00017 0.96093 1.21882 1.01537 0.98145 0.94239 1.19025 0.89422 0.97238 0.95681 1.21209 1.01286 1.22390 1.11130 0.92681 1.25032 0.96254 0.95518 0.97684 1.69965 1.07128 1.35897 1.40298 0.86586 0.78136 0.80317 0.82900 1.20666 1.21208 1.19915 0.92411 0.94037 0.91824 0.91859 0.91713 0.92025 0.91938 0.91652 0.91623 0.92508 0.92684 0.92395 0.77526 0.77503 0.92070 0.92079 0.92844 0.92845 0.96275 0.96262 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 7.71 37.16 0.29 -1.44 16 2 C -0.10 -0.99 2.43 -90.62 -0.22 -1.21 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.11 -0.92 5.20 -26.73 -0.14 -1.06 16 5 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 6 C -0.11 -0.73 5.20 -26.73 -0.14 -0.87 16 7 C -0.10 -0.73 2.30 -90.65 -0.21 -0.93 16 8 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 9 C -0.15 -1.10 9.03 37.16 0.34 -0.76 16 10 C 0.17 1.75 1.63 -67.96 -0.11 1.64 16 11 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 12 N -0.75 -8.01 4.27 -58.71 -0.25 -8.26 16 13 C 0.70 10.45 6.92 -86.92 -0.60 9.84 16 14 O -0.59 -11.02 13.46 5.29 0.07 -10.95 16 15 N -0.74 -10.80 5.56 -65.23 -0.36 -11.16 16 16 C 0.14 2.45 5.67 -4.04 -0.02 2.43 16 17 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 18 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 19 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 20 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 23 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 27 H 0.06 0.86 5.77 -51.93 -0.30 0.56 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.91 7.53 -51.93 -0.39 0.52 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.45 7.45 -51.93 -0.39 0.07 16 39 H 0.39 3.21 8.40 -40.82 -0.34 2.86 16 40 H 0.39 4.58 8.49 -40.82 -0.35 4.23 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -31.90 363.96 -9.90 -41.80 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -8.89 Total: 1.59 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.67 Total: -8.80 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: 0.12 Total: -45.68 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.07 Total: -10.95 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.90 -9.90 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246098008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.747 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds