Wall clock time and date at job start Tue Mar 31 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.47107 * 2 1 4 4 C 1.52998 * 109.46646 * 240.00096 * 2 1 3 5 5 C 1.53005 * 109.47159 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46730 * 60.00041 * 5 4 2 7 7 C 1.53000 * 109.47430 * 300.00239 * 6 5 4 8 8 H 1.09007 * 109.46641 * 300.00357 * 7 6 5 9 9 N 1.46499 * 109.47070 * 180.02562 * 7 6 5 10 10 C 1.34777 * 120.00199 * 85.00207 * 9 7 6 11 11 O 1.21283 * 119.99750 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27479 * 10 9 7 13 13 N 1.46902 * 109.47027 * 179.72353 * 12 10 9 14 14 C 1.46897 * 110.99609 * 293.95228 * 13 12 10 15 15 C 1.46898 * 111.00019 * 169.99709 * 13 12 10 16 16 C 1.50694 * 109.47466 * 189.99635 * 15 13 12 17 17 H 1.08007 * 119.99600 * 0.02562 * 16 15 13 18 18 C 1.37868 * 120.00520 * 179.97438 * 16 15 13 19 19 N 1.31520 * 120.00060 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00580 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.46603 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47399 * 119.99699 * 20 18 16 23 23 H 1.48501 * 109.47408 * 240.00434 * 20 18 16 24 24 C 1.52995 * 109.47023 * 59.99951 * 7 6 5 25 25 H 1.08999 * 109.47294 * 60.00050 * 24 7 6 26 26 C 1.52998 * 109.47337 * 180.02562 * 24 7 6 27 27 H 1.08998 * 109.47107 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46675 * 299.99899 * 1 2 3 29 29 H 1.08998 * 109.47164 * 59.99380 * 1 2 3 30 30 H 1.08998 * 109.47434 * 60.00320 * 4 2 1 31 31 H 1.09004 * 109.47835 * 300.00202 * 4 2 1 32 32 H 1.08999 * 109.47285 * 300.00474 * 5 4 2 33 33 H 1.09002 * 109.47187 * 180.02562 * 5 4 2 34 34 H 1.09005 * 109.46716 * 179.97438 * 6 5 4 35 35 H 1.08998 * 109.47384 * 60.00347 * 6 5 4 36 36 H 0.97000 * 119.99484 * 264.99304 * 9 7 6 37 37 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 38 38 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 39 39 H 1.09000 * 109.47177 * 60.00124 * 14 13 12 40 40 H 1.09001 * 109.46926 * 180.02562 * 14 13 12 41 41 H 1.09005 * 109.47416 * 299.99757 * 14 13 12 42 42 H 1.08998 * 109.47081 * 310.00584 * 15 13 12 43 43 H 1.09003 * 109.47009 * 69.99643 * 15 13 12 44 44 H 0.96991 * 120.00344 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.47045 * 59.99704 * 26 24 7 46 46 H 1.08999 * 109.47768 * 179.97438 * 26 24 7 47 47 H 1.09007 * 109.47256 * 300.00303 * 26 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7207 -1.2497 6 6 4.0805 -1.4417 -0.0005 7 6 3.5706 -0.7205 1.2488 8 1 3.9336 0.3073 1.2485 9 7 4.0599 -1.4105 2.4449 10 6 5.2819 -1.1238 2.9358 11 8 5.9766 -0.2948 2.3871 12 6 5.7877 -1.8381 4.1626 13 7 7.1363 -1.3556 4.4890 14 6 8.0974 -1.7326 3.4439 15 6 7.5679 -1.8486 5.8037 16 6 8.8363 -1.1449 6.2125 17 1 9.2774 -0.4051 5.5608 18 6 9.4330 -1.4447 7.4187 19 7 8.8956 -2.3452 8.2124 20 14 11.0048 -0.5719 7.9257 21 1 11.4022 0.3881 6.8647 22 1 10.7762 0.1610 9.1967 23 1 12.0861 -1.5715 8.1182 24 6 2.0406 -0.7210 1.2492 25 1 1.6776 -1.7488 1.2493 26 6 1.5306 0.0007 2.4981 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.6767 -0.2074 -2.1392 31 1 1.6766 -1.7489 -1.2494 32 1 3.9330 0.3070 -1.2499 33 1 3.9333 -1.2342 -2.1400 34 1 5.1705 -1.4417 -0.0010 35 1 3.7175 -2.4695 -0.0003 36 1 3.5043 -2.0737 2.8836 37 1 5.1185 -1.6403 5.0000 38 1 5.8220 -2.9104 3.9704 39 1 7.7905 -1.2960 2.4935 40 1 9.0877 -1.3635 3.7108 41 1 8.1273 -2.8184 3.3522 42 1 6.7889 -1.6502 6.5398 43 1 7.7498 -2.9218 5.7476 44 1 9.3156 -2.5563 9.0608 45 1 1.8936 1.0284 2.4975 46 1 0.4406 0.0008 2.4982 47 1 1.8943 -0.5125 3.3883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246166424.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:30 Heat of formation + Delta-G solvation = -58.741044 kcal Electronic energy + Delta-G solvation = -22967.871528 eV Core-core repulsion = 19763.490210 eV Total energy + Delta-G solvation = -3204.381318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.22176 -38.60858 -35.91939 -34.32673 -33.27477 -32.46949 -30.89548 -28.27758 -27.20048 -26.70304 -25.70308 -24.07200 -21.95980 -21.27951 -20.49467 -20.35729 -19.50298 -16.91219 -16.19168 -16.01006 -15.25442 -14.90818 -14.87527 -14.67005 -14.38762 -14.30794 -13.85436 -13.65997 -13.38884 -13.02396 -12.74844 -12.35098 -12.31252 -12.06058 -11.97264 -11.80139 -11.73630 -11.39342 -11.22400 -11.06308 -10.99901 -10.81560 -10.69290 -10.64715 -10.59564 -10.39808 -10.25837 -9.93701 -9.39139 -8.99546 -8.83285 -8.41363 -7.18671 -6.00667 -4.00949 3.05567 3.30570 3.34064 3.41217 3.48134 4.36622 4.44783 4.46570 4.54025 4.78026 4.91147 5.07729 5.13133 5.16815 5.19737 5.24376 5.30908 5.34319 5.36011 5.41640 5.53481 5.58488 5.69082 5.70856 5.79628 5.80999 5.84291 5.86368 5.95929 6.00557 6.03213 6.14373 6.14848 6.29446 6.36187 6.44984 6.68067 6.96130 7.26515 7.33536 7.68826 7.85872 8.09232 8.22559 8.54529 8.65707 9.07664 9.63171 11.10540 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.037195 B = 0.003029 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.603179 B = 9242.825032 C = 9589.459713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.130 4.130 7 C 0.153 3.847 8 H 0.086 0.914 9 N -0.736 5.736 10 C 0.516 3.484 11 O -0.518 6.518 12 C 0.037 3.963 13 N -0.523 5.523 14 C 0.034 3.966 15 C 0.192 3.808 16 C -0.503 4.503 17 H 0.065 0.935 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.091 4.091 25 H 0.073 0.927 26 C -0.150 4.150 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.396 0.604 37 H 0.095 0.905 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.003 0.997 42 H 0.030 0.970 43 H -0.008 1.008 44 H 0.260 0.740 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.263 0.446 -17.149 25.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.152 4.152 5 C -0.155 4.155 6 C -0.168 4.168 7 C 0.048 3.952 8 H 0.104 0.896 9 N -0.389 5.389 10 C 0.302 3.698 11 O -0.392 6.392 12 C -0.095 4.095 13 N -0.248 5.248 14 C -0.114 4.114 15 C 0.068 3.932 16 C -0.542 4.542 17 H 0.084 0.916 18 C -0.147 4.147 19 N -0.541 5.541 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.110 4.110 25 H 0.091 0.909 26 C -0.207 4.207 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.229 0.771 37 H 0.113 0.887 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.022 0.978 42 H 0.048 0.952 43 H 0.010 0.990 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.703 1.496 -17.330 24.819 hybrid contribution 0.560 -0.936 0.654 1.272 sum -17.143 0.560 -16.676 23.923 Atomic orbital electron populations 1.21880 0.95086 1.01794 1.01776 1.21120 0.95512 0.99763 0.93929 0.90936 1.21628 0.95628 1.00618 0.97374 1.21491 0.95341 1.01102 0.97578 1.21928 1.01474 0.99297 0.94126 1.20891 0.92601 0.97488 0.84225 0.89610 1.46132 1.18490 1.44286 1.30017 1.20973 0.80636 0.82696 0.85471 1.90639 1.55621 1.32928 1.60062 1.21952 0.95495 0.96607 0.95474 1.61846 0.98623 1.59668 1.04619 1.22354 0.97702 0.96248 0.95135 1.19791 0.96408 0.93562 0.83486 1.21205 1.07745 1.21987 1.03244 0.91636 1.24984 0.97901 0.95395 0.96420 1.69965 1.40113 1.32833 1.11193 0.86424 0.82948 0.79473 0.78513 1.19575 1.21010 1.21140 1.21408 0.94086 1.00196 0.95358 0.90862 1.21889 1.00773 1.00850 0.97181 0.92754 0.92250 0.92774 0.91994 0.91990 0.91750 0.91882 0.91323 0.92059 0.77066 0.88654 0.93255 0.91730 0.90812 0.97821 0.95203 0.99047 0.93022 0.92531 0.92348 0.92305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.84 37.16 0.33 -0.60 16 2 C -0.08 -0.63 2.25 -90.62 -0.20 -0.83 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -0.83 5.20 -26.73 -0.14 -0.97 16 5 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 6 C -0.13 -1.35 5.49 -26.73 -0.15 -1.50 16 7 C 0.15 1.67 1.90 -67.93 -0.13 1.54 16 8 H 0.09 1.16 7.58 -51.93 -0.39 0.76 16 9 N -0.74 -8.84 4.39 -53.81 -0.24 -9.08 16 10 C 0.52 8.59 7.52 -10.98 -0.08 8.51 16 11 O -0.52 -10.61 13.97 5.55 0.08 -10.53 16 12 C 0.04 0.66 5.45 -4.97 -0.03 0.63 16 13 N -0.52 -12.05 4.49 -245.83 -1.10 -13.15 16 14 C 0.03 0.74 9.03 60.06 0.54 1.28 16 15 C 0.19 5.11 4.72 -4.98 -0.02 5.09 16 16 C -0.50 -14.57 8.46 -34.45 -0.29 -14.86 16 17 H 0.07 1.92 7.13 -52.48 -0.37 1.54 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 20 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.09 -0.75 1.83 -90.62 -0.17 -0.92 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 C -0.15 -1.26 8.68 37.16 0.32 -0.94 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.37 6.43 -51.93 -0.33 0.03 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.40 3.72 8.39 -40.82 -0.34 3.38 16 37 H 0.10 1.60 7.93 -51.93 -0.41 1.19 16 38 H 0.05 0.82 8.12 -51.93 -0.42 0.39 16 39 H 0.06 1.36 5.88 -51.93 -0.31 1.05 16 40 H 0.07 1.71 6.76 -51.93 -0.35 1.35 16 41 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 42 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16 43 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 44 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 47 H 0.06 0.52 7.45 -51.93 -0.39 0.14 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -32.48 361.89 -9.06 -41.54 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.70 Total: -1.79 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -0.27 Total: -3.28 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -0.60 Total: -48.48 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.48 -9.06 -41.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246166424.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.206 kcal (2) G-P(sol) polarization free energy of solvation -32.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds