Wall clock time and date at job start Tue Mar 31 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46951 * 240.00756 * 2 1 3 5 5 C 1.53003 * 109.47302 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47203 * 59.99610 * 5 4 2 7 7 C 1.52999 * 109.47310 * 300.00385 * 6 5 4 8 8 H 1.08998 * 109.47485 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.47176 * 300.00179 * 7 6 5 10 10 C 1.34778 * 119.99449 * 275.00011 * 9 7 6 11 11 O 1.21282 * 120.00454 * 359.97438 * 10 9 7 12 12 C 1.50704 * 119.99980 * 179.97438 * 10 9 7 13 13 N 1.46903 * 109.47451 * 179.97438 * 12 10 9 14 14 C 1.46893 * 111.00134 * 293.95589 * 13 12 10 15 15 C 1.46895 * 110.99739 * 169.99958 * 13 12 10 16 16 C 1.50702 * 109.46770 * 190.00200 * 15 13 12 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 13 18 18 C 1.37884 * 119.99942 * 179.72214 * 16 15 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48501 * 109.47188 * 90.00793 * 20 18 16 22 22 H 1.48501 * 109.47085 * 210.00372 * 20 18 16 23 23 H 1.48498 * 109.47634 * 330.00608 * 20 18 16 24 24 C 1.52996 * 109.47459 * 120.00423 * 2 1 3 25 25 H 1.09002 * 109.46614 * 59.99841 * 24 2 1 26 26 C 1.52999 * 109.47310 * 300.00112 * 24 2 1 27 27 H 1.08998 * 109.46618 * 299.99313 * 1 2 3 28 28 H 1.08998 * 109.46990 * 59.99504 * 1 2 3 29 29 H 1.08994 * 109.46971 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47191 * 299.99753 * 4 2 1 31 31 H 1.08998 * 109.47485 * 60.00043 * 4 2 1 32 32 H 1.08998 * 109.47467 * 180.02562 * 5 4 2 33 33 H 1.09008 * 109.46903 * 299.99923 * 5 4 2 34 34 H 1.08991 * 109.47372 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.46957 * 59.99701 * 6 5 4 36 36 H 0.96993 * 120.00495 * 94.99574 * 9 7 6 37 37 H 1.09007 * 109.46760 * 59.99878 * 12 10 9 38 38 H 1.09000 * 109.47171 * 300.00428 * 12 10 9 39 39 H 1.08994 * 109.47470 * 296.04461 * 14 13 12 40 40 H 1.09011 * 109.47216 * 56.04379 * 14 13 12 41 41 H 1.09000 * 109.46850 * 176.04189 * 14 13 12 42 42 H 1.09004 * 109.47258 * 70.00524 * 15 13 12 43 43 H 1.08994 * 109.47601 * 310.00116 * 15 13 12 44 44 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.46700 * 300.00337 * 26 24 2 46 46 H 1.09004 * 109.46784 * 59.99398 * 26 24 2 47 47 H 1.08992 * 109.47051 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4415 -0.0006 7 6 3.5706 -0.7204 1.2487 8 1 3.9340 -1.2343 2.1387 9 7 4.0584 0.6610 1.2485 10 6 5.2804 0.9441 1.7415 11 8 5.9760 0.0555 2.1857 12 6 5.7825 2.3651 1.7408 13 7 7.1290 2.4090 2.3265 14 6 7.0956 2.0508 3.7507 15 6 7.7459 3.7275 2.1295 16 6 9.2008 3.6643 2.5175 17 1 9.6248 2.7373 2.8743 18 6 9.9921 4.7884 2.4111 19 7 9.4759 5.9171 1.9762 20 14 11.7972 4.7081 2.8847 21 1 12.6044 4.3311 1.6967 22 1 12.2382 6.0362 3.3815 23 1 11.9842 3.6931 3.9525 24 6 2.0401 -0.7213 1.2491 25 1 1.6767 -1.7490 1.2490 26 6 1.5301 -0.0002 2.4985 27 1 -0.3632 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6767 -1.7487 -1.2495 31 1 1.6767 -0.2072 -2.1393 32 1 3.9333 -1.2339 -2.1400 33 1 3.9330 0.3073 -1.2499 34 1 5.1705 -1.4408 -0.0006 35 1 3.7175 -2.4693 -0.0004 36 1 3.5019 1.3718 0.8936 37 1 5.1098 2.9883 2.3302 38 1 5.8188 2.7371 0.7169 39 1 6.5156 2.7934 4.2986 40 1 6.6339 1.0703 3.8681 41 1 8.1125 2.0228 4.1422 42 1 7.2359 4.4638 2.7507 43 1 7.6616 4.0152 1.0816 44 1 10.0325 6.7081 1.9017 45 1 1.8934 1.0275 2.4985 46 1 0.4401 -0.0002 2.4984 47 1 1.8931 -0.5144 3.3883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246166430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:32 Heat of formation + Delta-G solvation = -55.202368 kcal Electronic energy + Delta-G solvation = -23281.693318 eV Core-core repulsion = 20077.465449 eV Total energy + Delta-G solvation = -3204.227869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.44400 -38.51118 -35.85633 -33.99117 -33.19445 -32.46675 -31.12053 -28.24792 -27.24829 -26.76234 -25.69355 -24.05028 -22.09812 -21.38917 -20.88423 -20.00198 -19.00548 -16.99709 -16.13574 -15.96953 -15.45811 -15.02802 -14.82000 -14.52318 -14.29136 -14.18567 -13.94786 -13.57624 -13.32253 -13.24794 -12.59067 -12.35986 -12.23325 -12.08200 -12.00362 -11.80096 -11.71315 -11.62185 -11.33843 -11.02315 -10.98609 -10.83171 -10.69397 -10.64277 -10.49902 -10.27177 -10.10608 -9.92651 -9.41094 -9.03255 -8.79065 -8.40221 -7.18170 -6.00215 -4.00478 3.07030 3.35856 3.36416 3.41276 3.46808 4.40027 4.41570 4.46916 4.47501 4.80307 4.96056 5.08846 5.14817 5.17521 5.20459 5.25237 5.32828 5.34481 5.36283 5.45003 5.55514 5.61993 5.67524 5.71749 5.79203 5.80733 5.81274 5.86860 5.96074 6.03973 6.12200 6.14081 6.19485 6.26703 6.37388 6.44820 6.70857 6.95990 7.26800 7.33806 7.69912 7.86212 8.09684 8.23027 8.55181 8.66853 9.07746 9.63498 11.10931 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.031360 B = 0.003263 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.645796 B = 8578.584479 C = 8624.119484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.114 4.114 5 C -0.119 4.119 6 C -0.131 4.131 7 C 0.153 3.847 8 H 0.085 0.915 9 N -0.731 5.731 10 C 0.515 3.485 11 O -0.519 6.519 12 C 0.036 3.964 13 N -0.522 5.522 14 C 0.036 3.964 15 C 0.193 3.807 16 C -0.504 4.504 17 H 0.065 0.935 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.899 3.101 21 H -0.280 1.280 22 H -0.288 1.288 23 H -0.273 1.273 24 C -0.092 4.092 25 H 0.081 0.919 26 C -0.149 4.149 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.395 0.605 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.004 0.996 40 H 0.063 0.937 41 H 0.072 0.928 42 H -0.008 1.008 43 H 0.030 0.970 44 H 0.261 0.739 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.380 -12.147 -4.561 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.107 4.107 3 H 0.087 0.913 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.170 4.170 7 C 0.049 3.951 8 H 0.103 0.897 9 N -0.386 5.386 10 C 0.302 3.698 11 O -0.393 6.393 12 C -0.096 4.096 13 N -0.247 5.247 14 C -0.113 4.113 15 C 0.068 3.932 16 C -0.543 4.543 17 H 0.083 0.917 18 C -0.147 4.147 19 N -0.541 5.541 20 Si 0.727 3.273 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.198 1.198 24 C -0.111 4.111 25 H 0.099 0.901 26 C -0.206 4.206 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.230 0.770 37 H 0.067 0.933 38 H 0.113 0.887 39 H 0.023 0.977 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.010 0.990 43 H 0.048 0.952 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.502 -12.951 -4.496 23.838 hybrid contribution 0.197 1.111 0.353 1.183 sum -19.305 -11.839 -4.143 23.022 Atomic orbital electron populations 1.21887 0.95171 1.01771 1.01765 1.21168 0.95518 0.99543 0.94469 0.91260 1.21609 0.95780 1.00506 0.97216 1.21494 0.95096 1.01334 0.97699 1.21917 1.01707 0.98828 0.94508 1.20857 0.92519 0.83134 0.98639 0.89697 1.46162 1.18227 1.09213 1.65026 1.20957 0.80441 0.91836 0.76582 1.90639 1.55395 1.48513 1.44799 1.21947 0.93454 0.92072 1.02088 1.61844 1.14413 1.33326 1.15134 1.22330 1.02133 0.98783 0.88039 1.19788 0.94432 0.82262 0.96714 1.21170 0.93893 0.96272 1.42921 0.91703 1.24984 0.98865 0.95303 0.95525 1.69960 1.36125 1.00755 1.47259 0.86471 0.84848 0.77138 0.78816 1.20621 1.21363 1.19804 1.21447 0.94144 1.00497 0.95023 0.90090 1.21879 1.00801 1.00915 0.97050 0.92300 0.92787 0.92770 0.92059 0.92077 0.92151 0.91706 0.91084 0.91545 0.77036 0.93345 0.88712 0.97730 0.91843 0.90944 0.99050 0.95231 0.92976 0.92399 0.92349 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.84 37.16 0.33 -0.60 16 2 C -0.09 -0.64 2.08 -90.62 -0.19 -0.82 16 3 H 0.07 0.52 6.50 -51.93 -0.34 0.18 16 4 C -0.11 -0.85 5.20 -26.73 -0.14 -0.99 16 5 C -0.12 -1.09 5.77 -26.73 -0.15 -1.25 16 6 C -0.13 -1.38 5.60 -26.73 -0.15 -1.53 16 7 C 0.15 1.64 2.23 -67.90 -0.15 1.49 16 8 H 0.08 1.09 7.58 -51.93 -0.39 0.69 16 9 N -0.73 -8.69 3.54 -53.78 -0.19 -8.88 16 10 C 0.52 8.51 7.49 -10.98 -0.08 8.43 16 11 O -0.52 -10.54 14.00 5.56 0.08 -10.46 16 12 C 0.04 0.65 5.45 -4.97 -0.03 0.63 16 13 N -0.52 -12.02 4.49 -245.83 -1.10 -13.12 16 14 C 0.04 0.77 9.00 60.06 0.54 1.31 16 15 C 0.19 5.13 4.72 -4.98 -0.02 5.10 16 16 C -0.50 -14.60 8.51 -34.44 -0.29 -14.89 16 17 H 0.06 1.89 7.10 -52.49 -0.37 1.52 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 20 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.09 -0.74 2.05 -90.59 -0.19 -0.92 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 26 C -0.15 -1.19 8.68 37.16 0.32 -0.87 16 27 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.66 7.60 -51.92 -0.39 0.26 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.39 3.85 6.65 -40.82 -0.27 3.58 16 37 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 38 H 0.09 1.60 7.93 -51.93 -0.41 1.18 16 39 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.06 1.32 5.83 -51.92 -0.30 1.02 16 41 H 0.07 1.67 6.86 -51.93 -0.36 1.32 16 42 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 43 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.06 0.50 7.45 -51.93 -0.39 0.11 16 46 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 357.50 15.07 5.39 5.39 Total: -1.00 -32.25 357.50 -8.93 -41.17 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -8.51 Total: -1.54 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -0.30 Total: -3.43 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.56 Total: -48.25 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.25 -8.93 -41.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246166430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.029 kcal (2) G-P(sol) polarization free energy of solvation -32.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds