Wall clock time and date at job start Tue Mar 31 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47290 * 2 1 4 4 C 1.50697 * 109.47067 * 120.00066 * 2 1 3 5 5 O 1.21282 * 119.99734 * 128.16757 * 4 2 1 6 6 N 1.34770 * 120.00471 * 308.17162 * 4 2 1 7 7 C 1.46932 * 120.62589 * 335.11200 * 6 4 2 8 8 H 1.09006 * 109.70129 * 113.73165 * 7 6 4 9 9 C 1.52998 * 109.59020 * 353.37376 * 7 6 4 10 10 C 1.53191 * 108.77205 * 233.58246 * 7 6 4 11 11 C 1.53036 * 109.31601 * 305.36695 * 10 7 6 12 12 C 1.53037 * 109.54006 * 61.36377 * 11 10 7 13 13 C 1.46922 * 120.63686 * 155.08478 * 6 4 2 14 14 H 1.08995 * 109.59155 * 246.20387 * 13 6 4 15 15 C 1.53005 * 109.58309 * 6.63022 * 13 6 4 16 16 N 1.46903 * 109.46938 * 240.00131 * 2 1 3 17 17 C 1.46906 * 110.99777 * 172.99754 * 16 2 1 18 18 C 1.46900 * 110.99841 * 49.04837 * 16 2 1 19 19 C 1.50702 * 109.46711 * 189.99678 * 18 16 2 20 20 H 1.07996 * 120.00618 * 0.02562 * 19 18 16 21 21 C 1.37876 * 119.99802 * 179.97438 * 19 18 16 22 22 N 1.31517 * 120.00143 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00172 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47244 * 89.99805 * 23 21 19 25 25 H 1.48503 * 109.47345 * 210.00139 * 23 21 19 26 26 H 1.48502 * 109.46857 * 329.99547 * 23 21 19 27 27 H 1.09004 * 109.47532 * 49.84509 * 1 2 3 28 28 H 1.08997 * 109.47229 * 169.84476 * 1 2 3 29 29 H 1.08998 * 109.47434 * 289.84914 * 1 2 3 30 30 H 1.08999 * 109.46518 * 307.04752 * 9 7 6 31 31 H 1.09001 * 109.46918 * 67.04555 * 9 7 6 32 32 H 1.08999 * 109.47266 * 187.04763 * 9 7 6 33 33 H 1.09001 * 109.49691 * 185.41259 * 10 7 6 34 34 H 1.08999 * 109.49506 * 65.32271 * 10 7 6 35 35 H 1.09003 * 109.45843 * 301.34705 * 11 10 7 36 36 H 1.09004 * 109.46092 * 181.39050 * 11 10 7 37 37 H 1.09002 * 109.49626 * 58.58745 * 12 11 10 38 38 H 1.08999 * 109.50103 * 178.68295 * 12 11 10 39 39 H 1.09005 * 109.47087 * 182.44123 * 15 13 6 40 40 H 1.08992 * 109.46891 * 302.44200 * 15 13 6 41 41 H 1.09000 * 109.47120 * 62.44577 * 15 13 6 42 42 H 1.09005 * 109.46529 * 67.78076 * 17 16 2 43 43 H 1.08996 * 109.46954 * 187.77343 * 17 16 2 44 44 H 1.08997 * 109.47355 * 307.77888 * 17 16 2 45 45 H 1.08998 * 109.47026 * 309.99735 * 18 16 2 46 46 H 1.08997 * 109.47497 * 69.99776 * 18 16 2 47 47 H 0.97002 * 120.00206 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.8464 -1.6032 1.1252 6 7 1.5769 -0.3537 2.4477 7 6 1.0531 0.9985 2.6842 8 1 -0.0139 0.9466 2.9010 9 6 1.2827 1.8621 1.4423 10 6 1.7906 1.6108 3.8792 11 6 1.6730 0.6719 5.0819 12 6 2.3257 -0.6715 4.7483 13 6 1.5942 -1.3097 3.5632 14 1 0.5717 -1.5522 3.8526 15 6 2.3251 -2.5840 3.1353 16 7 2.0196 -0.6925 -1.1995 17 6 3.4785 -0.5690 -1.3200 18 6 1.3476 -0.1934 -2.4066 19 6 1.6874 -1.0828 -3.5748 20 1 2.3372 -1.9339 -3.4344 21 6 1.1679 -0.8106 -4.8226 22 7 1.4641 -1.5870 -5.8419 23 14 0.0434 0.6611 -5.0653 24 1 0.8566 1.8528 -5.4174 25 1 -0.9164 0.3752 -6.1619 26 1 -0.7042 0.9253 -3.8097 27 1 -0.3634 0.6627 -0.7855 28 1 -0.3633 -1.0115 -0.1812 29 1 -0.3634 0.3489 0.9666 30 1 2.3341 1.8175 1.1583 31 1 0.6687 1.4898 0.6223 32 1 1.0090 2.8941 1.6617 33 1 1.3463 2.5752 4.1256 34 1 2.8419 1.7482 3.6262 35 1 0.6206 0.5154 5.3188 36 1 2.1760 1.1168 5.9405 37 1 3.3720 -0.5128 4.4872 38 1 2.2622 -1.3317 5.6133 39 1 2.2991 -3.3085 3.9493 40 1 1.8359 -3.0060 2.2575 41 1 3.3609 -2.3452 2.8944 42 1 3.9580 -1.1282 -0.5165 43 1 3.7987 -0.9687 -2.2821 44 1 3.7612 0.4814 -1.2506 45 1 0.2690 -0.1962 -2.2495 46 1 1.6817 0.8230 -2.6146 47 1 1.0989 -1.3953 -6.7199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246742134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:17 Heat of formation + Delta-G solvation = 39.588094 kcal Electronic energy + Delta-G solvation = -24593.962263 eV Core-core repulsion = 21393.844817 eV Total energy + Delta-G solvation = -3200.117447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.09590 -37.81194 -36.79045 -34.53021 -32.87085 -32.39191 -30.65014 -28.87815 -28.01823 -26.36210 -24.72964 -24.35008 -22.70824 -21.68777 -21.03551 -19.73305 -18.98218 -16.93615 -16.13685 -16.07799 -15.68968 -15.28890 -14.57856 -14.46081 -14.23748 -14.14603 -13.71174 -13.51969 -13.05096 -12.88583 -12.81263 -12.41643 -12.35372 -11.98354 -11.94027 -11.76378 -11.71766 -11.28036 -11.17453 -11.06302 -10.97745 -10.85102 -10.74593 -10.69267 -10.58437 -10.31725 -10.15676 -9.79336 -9.21005 -8.76669 -8.53226 -8.34773 -7.16991 -6.01032 -3.97480 2.86937 3.03508 3.28491 3.35607 3.36602 4.43455 4.44707 4.51716 4.61836 4.76037 4.83822 4.91690 5.04302 5.11478 5.19485 5.30280 5.32862 5.37013 5.44131 5.50045 5.56906 5.63141 5.66644 5.76361 5.77435 5.80565 5.88656 5.92356 6.01689 6.08139 6.14984 6.25916 6.28451 6.41846 6.50272 6.53064 6.81306 6.87608 6.92282 7.08616 7.56763 7.66502 7.99013 8.10308 8.55717 8.71880 9.10176 9.60395 11.12369 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028739 B = 0.004766 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.037277 B = 5872.946104 C = 6416.519871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.027 3.973 3 H 0.091 0.909 4 C 0.533 3.467 5 O -0.503 6.503 6 N -0.626 5.626 7 C 0.148 3.852 8 H 0.073 0.927 9 C -0.217 4.217 10 C -0.129 4.129 11 C -0.119 4.119 12 C -0.131 4.131 13 C 0.149 3.851 14 H 0.066 0.934 15 C -0.144 4.144 16 N -0.514 5.514 17 C 0.030 3.970 18 C 0.158 3.842 19 C -0.505 4.505 20 H 0.081 0.919 21 C 0.067 3.933 22 N -0.901 5.901 23 Si 0.875 3.125 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.267 1.267 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.001 0.999 45 H 0.035 0.965 46 H -0.019 1.019 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.180 7.787 22.410 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.085 4.085 3 H 0.108 0.892 4 C 0.322 3.678 5 O -0.376 6.376 6 N -0.364 5.364 7 C 0.045 3.955 8 H 0.090 0.910 9 C -0.273 4.273 10 C -0.168 4.168 11 C -0.156 4.156 12 C -0.170 4.170 13 C 0.046 3.954 14 H 0.084 0.916 15 C -0.201 4.201 16 N -0.239 5.239 17 C -0.118 4.118 18 C 0.032 3.968 19 C -0.544 4.544 20 H 0.099 0.901 21 C -0.134 4.134 22 N -0.540 5.540 23 Si 0.702 3.298 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.192 1.192 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.019 0.981 45 H 0.053 0.947 46 H -0.001 1.001 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.872 6.752 22.171 23.252 hybrid contribution -0.468 1.735 -0.292 1.820 sum -2.340 8.487 21.879 23.584 Atomic orbital electron populations 1.22038 0.93346 1.03855 1.01648 1.23028 0.96432 0.97881 0.91115 0.89186 1.20718 0.80120 0.83358 0.83650 1.90629 1.29669 1.31297 1.86009 1.48171 1.65941 1.12687 1.09626 1.21030 0.97462 0.81795 0.95234 0.90958 1.23766 1.03726 1.00236 0.99569 1.21976 1.01413 0.98539 0.94841 1.21511 1.00982 0.95587 0.97562 1.22013 1.00396 0.96648 0.97913 1.21144 0.98869 0.89392 0.85983 0.91561 1.22201 1.02843 0.94715 1.00359 1.61698 1.05416 1.55746 1.01051 1.22448 0.88063 0.97537 1.03733 1.20310 0.94772 0.93662 0.88015 1.21055 1.30052 1.12577 0.90682 0.90051 1.24897 0.96264 0.96318 0.95912 1.69898 1.45297 1.38386 1.00448 0.86878 0.81296 0.83556 0.78071 1.20403 1.21194 1.19233 0.91101 0.90876 0.91570 0.91503 0.86697 0.91505 0.90920 0.91496 0.91876 0.91868 0.91467 0.91163 0.93747 0.91406 0.90335 0.90974 0.90238 0.98103 0.94741 1.00141 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 6.39 37.16 0.24 -2.08 16 2 C 0.03 0.46 1.52 -68.87 -0.10 0.36 16 3 H 0.09 1.44 3.89 -54.93 -0.21 1.22 16 4 C 0.53 8.88 5.98 -10.99 -0.07 8.81 16 5 O -0.50 -9.86 10.13 5.56 0.06 -9.80 16 6 N -0.63 -8.05 2.79 -157.73 -0.44 -8.49 16 7 C 0.15 1.49 2.40 -67.60 -0.16 1.33 16 8 H 0.07 0.65 7.66 -51.93 -0.40 0.25 16 9 C -0.22 -2.28 6.82 37.16 0.25 -2.02 16 10 C -0.13 -1.09 5.37 -26.61 -0.14 -1.23 16 11 C -0.12 -0.92 5.88 -26.69 -0.16 -1.08 16 12 C -0.13 -1.22 5.37 -26.61 -0.14 -1.36 16 13 C 0.15 1.71 3.49 -67.60 -0.24 1.48 16 14 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 15 C -0.14 -1.93 7.64 37.16 0.28 -1.64 16 16 N -0.51 -11.32 4.41 -237.73 -1.05 -12.37 16 17 C 0.03 0.65 9.08 60.07 0.55 1.19 16 18 C 0.16 3.85 3.40 -4.98 -0.02 3.84 16 19 C -0.51 -14.63 8.90 -34.44 -0.31 -14.93 16 20 H 0.08 2.61 7.45 -52.49 -0.39 2.22 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 22 N -0.90 -27.94 13.96 55.43 0.77 -27.16 16 23 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 27 H 0.07 1.09 6.72 -51.93 -0.35 0.74 16 28 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.07 0.80 5.02 -51.93 -0.26 0.54 16 30 H 0.07 0.80 6.45 -51.93 -0.34 0.46 16 31 H 0.12 1.36 2.57 -60.55 -0.16 1.21 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 1.09 6.89 -51.93 -0.36 0.73 16 41 H 0.08 1.20 6.72 -51.93 -0.35 0.85 16 42 H 0.07 1.53 5.86 -51.93 -0.30 1.22 16 43 H 0.08 1.87 6.62 -51.93 -0.34 1.53 16 44 H 0.00 0.01 8.02 -51.93 -0.42 -0.41 16 45 H 0.03 0.82 4.86 -51.93 -0.25 0.57 16 46 H -0.02 -0.46 7.55 -51.93 -0.39 -0.85 16 47 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -32.27 333.22 -8.33 -40.60 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -7.91 Total: 0.96 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.11 Total: -5.48 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.71 Total: -48.02 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.06 Total: -9.80 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.27 -8.33 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246742134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.187 kcal (2) G-P(sol) polarization free energy of solvation -32.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds