Wall clock time and date at job start Tue Mar 31 2020 06:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47290 * 2 1 4 4 C 1.50697 * 109.47067 * 120.00066 * 2 1 3 5 5 O 1.21282 * 119.99734 * 128.16757 * 4 2 1 6 6 N 1.34770 * 120.00471 * 308.17162 * 4 2 1 7 7 C 1.46932 * 120.62589 * 335.11200 * 6 4 2 8 8 H 1.09006 * 109.70129 * 113.73165 * 7 6 4 9 9 C 1.52998 * 109.59020 * 353.37376 * 7 6 4 10 10 C 1.53191 * 108.77205 * 233.58246 * 7 6 4 11 11 C 1.53036 * 109.31601 * 305.36695 * 10 7 6 12 12 C 1.53037 * 109.54006 * 61.36377 * 11 10 7 13 13 C 1.46922 * 120.63686 * 155.08478 * 6 4 2 14 14 H 1.08995 * 109.59155 * 246.20387 * 13 6 4 15 15 C 1.53005 * 109.58309 * 6.63022 * 13 6 4 16 16 N 1.46903 * 109.46938 * 240.00131 * 2 1 3 17 17 C 1.46906 * 110.99777 * 172.99754 * 16 2 1 18 18 C 1.46900 * 110.99841 * 49.04837 * 16 2 1 19 19 C 1.50702 * 109.46711 * 189.99678 * 18 16 2 20 20 H 1.07996 * 120.00618 * 0.02562 * 19 18 16 21 21 C 1.37876 * 119.99802 * 179.97438 * 19 18 16 22 22 N 1.31517 * 120.00143 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 120.00172 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47244 * 89.99805 * 23 21 19 25 25 H 1.48503 * 109.47345 * 210.00139 * 23 21 19 26 26 H 1.48502 * 109.46857 * 329.99547 * 23 21 19 27 27 H 1.09004 * 109.47532 * 49.84509 * 1 2 3 28 28 H 1.08997 * 109.47229 * 169.84476 * 1 2 3 29 29 H 1.08998 * 109.47434 * 289.84914 * 1 2 3 30 30 H 1.08999 * 109.46518 * 307.04752 * 9 7 6 31 31 H 1.09001 * 109.46918 * 67.04555 * 9 7 6 32 32 H 1.08999 * 109.47266 * 187.04763 * 9 7 6 33 33 H 1.09001 * 109.49691 * 185.41259 * 10 7 6 34 34 H 1.08999 * 109.49506 * 65.32271 * 10 7 6 35 35 H 1.09003 * 109.45843 * 301.34705 * 11 10 7 36 36 H 1.09004 * 109.46092 * 181.39050 * 11 10 7 37 37 H 1.09002 * 109.49626 * 58.58745 * 12 11 10 38 38 H 1.08999 * 109.50103 * 178.68295 * 12 11 10 39 39 H 1.09005 * 109.47087 * 182.44123 * 15 13 6 40 40 H 1.08992 * 109.46891 * 302.44200 * 15 13 6 41 41 H 1.09000 * 109.47120 * 62.44577 * 15 13 6 42 42 H 1.09005 * 109.46529 * 67.78076 * 17 16 2 43 43 H 1.08996 * 109.46954 * 187.77343 * 17 16 2 44 44 H 1.08997 * 109.47355 * 307.77888 * 17 16 2 45 45 H 1.08998 * 109.47026 * 309.99735 * 18 16 2 46 46 H 1.08997 * 109.47497 * 69.99776 * 18 16 2 47 47 H 0.97002 * 120.00206 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.8464 -1.6032 1.1252 6 7 1.5769 -0.3537 2.4477 7 6 1.0531 0.9985 2.6842 8 1 -0.0139 0.9466 2.9010 9 6 1.2827 1.8621 1.4423 10 6 1.7906 1.6108 3.8792 11 6 1.6730 0.6719 5.0819 12 6 2.3257 -0.6715 4.7483 13 6 1.5942 -1.3097 3.5632 14 1 0.5717 -1.5522 3.8526 15 6 2.3251 -2.5840 3.1353 16 7 2.0196 -0.6925 -1.1995 17 6 3.4785 -0.5690 -1.3200 18 6 1.3476 -0.1934 -2.4066 19 6 1.6874 -1.0828 -3.5748 20 1 2.3372 -1.9339 -3.4344 21 6 1.1679 -0.8106 -4.8226 22 7 1.4641 -1.5870 -5.8419 23 14 0.0434 0.6611 -5.0653 24 1 0.8566 1.8528 -5.4174 25 1 -0.9164 0.3752 -6.1619 26 1 -0.7042 0.9253 -3.8097 27 1 -0.3634 0.6627 -0.7855 28 1 -0.3633 -1.0115 -0.1812 29 1 -0.3634 0.3489 0.9666 30 1 2.3341 1.8175 1.1583 31 1 0.6687 1.4898 0.6223 32 1 1.0090 2.8941 1.6617 33 1 1.3463 2.5752 4.1256 34 1 2.8419 1.7482 3.6262 35 1 0.6206 0.5154 5.3188 36 1 2.1760 1.1168 5.9405 37 1 3.3720 -0.5128 4.4872 38 1 2.2622 -1.3317 5.6133 39 1 2.2991 -3.3085 3.9493 40 1 1.8359 -3.0060 2.2575 41 1 3.3609 -2.3452 2.8944 42 1 3.9580 -1.1282 -0.5165 43 1 3.7987 -0.9687 -2.2821 44 1 3.7612 0.4814 -1.2506 45 1 0.2690 -0.1962 -2.2495 46 1 1.6817 0.8230 -2.6146 47 1 1.0989 -1.3953 -6.7199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246742134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:17 Heat of formation + Delta-G solvation = 17.340336 kcal Electronic energy + Delta-G solvation = -24594.926998 eV Core-core repulsion = 21393.844817 eV Total energy + Delta-G solvation = -3201.082182 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.22061 -39.02119 -38.09909 -35.80543 -34.45403 -33.77144 -31.92860 -30.06660 -29.79432 -27.29061 -26.05797 -25.95584 -24.06848 -22.56497 -22.09098 -21.21320 -20.11160 -18.99430 -17.32425 -17.21411 -16.88090 -16.56108 -16.21068 -15.74008 -15.51175 -15.23129 -14.95996 -14.64193 -14.46416 -14.36501 -13.94008 -13.82709 -13.56046 -13.32322 -13.13415 -12.90985 -12.81460 -12.76329 -12.67091 -12.48283 -12.25553 -12.08706 -11.90157 -11.74493 -11.68268 -11.63289 -11.44447 -11.37885 -11.22309 -10.75582 -10.07400 -9.39806 -8.81589 -8.25867 -6.29833 1.35827 1.39160 1.49811 1.61513 1.99981 2.36983 3.06576 3.23042 3.55159 3.79521 3.86689 3.91829 4.00262 4.08327 4.17980 4.27441 4.29815 4.42252 4.44180 4.56736 4.58737 4.65424 4.71866 4.77088 4.80651 4.86194 4.89415 4.95121 5.01610 5.04395 5.08700 5.13880 5.16370 5.21551 5.22110 5.26017 5.33786 5.39797 5.52874 5.56218 5.83786 5.99573 6.33450 6.49564 6.72127 6.76485 7.31809 7.34518 8.91565 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028739 B = 0.004766 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.037277 B = 5872.946104 C = 6416.519871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.024 3.976 3 H 0.113 0.887 4 C 0.529 3.471 5 O -0.546 6.546 6 N -0.619 5.619 7 C 0.140 3.860 8 H 0.098 0.902 9 C -0.217 4.217 10 C -0.126 4.126 11 C -0.115 4.115 12 C -0.126 4.126 13 C 0.144 3.856 14 H 0.087 0.913 15 C -0.136 4.136 16 N -0.540 5.540 17 C 0.043 3.957 18 C 0.172 3.828 19 C -0.519 4.519 20 H 0.026 0.974 21 C 0.003 3.997 22 N -0.953 5.953 23 Si 0.952 3.048 24 H -0.267 1.267 25 H -0.283 1.283 26 H -0.237 1.237 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.103 0.897 30 H 0.047 0.953 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.032 0.968 41 H 0.051 0.949 42 H 0.070 0.930 43 H 0.044 0.956 44 H 0.019 0.981 45 H 0.048 0.952 46 H -0.011 1.011 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.690 11.112 25.385 28.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 H 0.129 0.871 4 C 0.317 3.683 5 O -0.423 6.423 6 N -0.356 5.356 7 C 0.038 3.962 8 H 0.115 0.885 9 C -0.273 4.273 10 C -0.164 4.164 11 C -0.153 4.153 12 C -0.164 4.164 13 C 0.042 3.958 14 H 0.105 0.895 15 C -0.193 4.193 16 N -0.265 5.265 17 C -0.105 4.105 18 C 0.045 3.955 19 C -0.558 4.558 20 H 0.045 0.955 21 C -0.193 4.193 22 N -0.594 5.594 23 Si 0.775 3.225 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.160 1.160 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.121 0.879 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.107 0.893 39 H 0.086 0.914 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.037 0.963 45 H 0.065 0.935 46 H 0.007 0.993 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.395 10.101 25.210 27.512 hybrid contribution 0.396 0.602 -1.141 1.349 sum -4.000 10.703 24.070 26.644 Atomic orbital electron populations 1.22039 0.91552 1.02652 1.03940 1.23326 0.97833 0.98374 0.89164 0.87055 1.20696 0.80002 0.82782 0.84789 1.90630 1.31718 1.33236 1.86743 1.48245 1.64668 1.14115 1.08570 1.21385 0.98971 0.79942 0.95883 0.88461 1.23659 1.02212 1.02154 0.99283 1.21971 1.00419 0.99804 0.94179 1.21518 1.01912 0.94145 0.97681 1.21966 0.99057 0.98122 0.97274 1.21336 0.99950 0.88321 0.86193 0.89497 1.22041 1.01095 0.96522 0.99692 1.61523 1.05290 1.57584 1.02142 1.22234 0.88423 0.98292 1.01596 1.20053 0.95492 0.92628 0.87279 1.21294 1.29355 1.11923 0.93184 0.95543 1.25948 0.98136 1.00089 0.95139 1.70082 1.47054 1.41007 1.01230 0.85646 0.78922 0.78729 0.79243 1.19197 1.20831 1.16023 0.90730 0.93248 0.87868 0.93375 0.87930 0.88488 0.88272 0.93099 0.90256 0.90418 0.93391 0.89340 0.91445 0.94864 0.92986 0.91132 0.93745 0.96274 0.93458 0.99323 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 6.39 71.98 0.46 -3.64 16 2 C 0.02 0.79 1.52 44.17 0.07 0.86 16 3 H 0.11 3.34 3.89 -5.21 -0.02 3.32 16 4 C 0.53 17.55 5.98 87.66 0.52 18.08 16 5 O -0.55 -22.45 10.13 -3.04 -0.03 -22.48 16 6 N -0.62 -14.75 2.79 -771.33 -2.15 -16.90 16 7 C 0.14 2.26 2.40 44.97 0.11 2.37 16 8 H 0.10 1.18 7.66 -2.38 -0.02 1.16 16 9 C -0.22 -3.75 6.82 71.98 0.49 -3.26 16 10 C -0.13 -1.58 5.37 30.67 0.16 -1.42 16 11 C -0.12 -1.28 5.88 30.62 0.18 -1.10 16 12 C -0.13 -1.99 5.37 30.67 0.16 -1.82 16 13 C 0.14 3.03 3.49 44.98 0.16 3.19 16 14 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 15 C -0.14 -3.69 7.64 71.98 0.55 -3.14 16 16 N -0.54 -24.34 4.41 -906.04 -3.99 -28.34 16 17 C 0.04 1.92 9.08 127.69 1.16 3.08 16 18 C 0.17 8.37 3.40 85.56 0.29 8.66 16 19 C -0.52 -31.34 8.90 25.60 0.23 -31.11 16 20 H 0.03 1.83 7.45 -2.91 -0.02 1.81 16 21 C 0.00 0.20 5.47 84.65 0.46 0.67 16 22 N -0.95 -61.33 13.96 21.45 0.30 -61.03 16 23 Si 0.95 43.66 27.47 68.60 1.88 45.54 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 H -0.24 -9.65 6.54 99.48 0.65 -9.00 16 27 H 0.07 2.05 6.72 -2.38 -0.02 2.04 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.10 2.10 5.02 -2.39 -0.01 2.08 16 30 H 0.05 1.03 6.45 -2.39 -0.02 1.02 16 31 H 0.10 2.04 2.57 -10.49 -0.03 2.02 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.03 1.11 6.89 -2.39 -0.02 1.09 16 41 H 0.05 1.67 6.72 -2.39 -0.02 1.66 16 42 H 0.07 3.18 5.86 -2.38 -0.01 3.16 16 43 H 0.04 2.25 6.62 -2.39 -0.02 2.24 16 44 H 0.02 0.76 8.02 -2.39 -0.02 0.74 16 45 H 0.05 2.18 4.86 -2.39 -0.01 2.17 16 46 H -0.01 -0.51 7.55 -2.39 -0.02 -0.53 16 47 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -76.04 333.22 1.87 -74.17 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.86 Total: 17.63 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: 5.01 Total: -8.59 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -5.85 Total: -106.27 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.03 Total: -22.48 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Total: -76.04 1.87 -74.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246742134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.510 kcal (2) G-P(sol) polarization free energy of solvation -76.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds