Wall clock time and date at job start Tue Mar 31 2020 06:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.53002 * 109.47628 * 180.02562 * 4 2 1 6 6 H 1.09001 * 109.47142 * 180.02562 * 5 4 2 7 7 N 1.46496 * 109.46704 * 60.00005 * 5 4 2 8 8 C 1.34773 * 120.00058 * 85.00712 * 7 5 4 9 9 O 1.21592 * 119.99829 * 359.97438 * 8 7 5 10 10 N 1.34774 * 120.00256 * 179.97438 * 8 7 5 11 11 C 1.46500 * 120.00194 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47338 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.47529 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47375 * 180.02562 * 13 12 11 15 15 H 1.07993 * 119.99709 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99765 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99409 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00160 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47526 * 90.00077 * 18 16 14 20 20 H 1.48500 * 109.47265 * 210.00473 * 18 16 14 21 21 H 1.48504 * 109.47129 * 330.00104 * 18 16 14 22 22 C 1.53000 * 109.46806 * 300.00074 * 5 4 2 23 23 C 1.53002 * 109.46911 * 59.99917 * 22 5 4 24 24 H 1.09002 * 109.47067 * 59.99825 * 23 22 5 25 25 C 1.53005 * 109.46982 * 179.97438 * 23 22 5 26 26 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 30 30 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 32 32 H 0.96997 * 119.99996 * 264.99576 * 7 5 4 33 33 H 0.96998 * 120.00471 * 359.97438 * 10 8 7 34 34 H 1.09003 * 109.47492 * 300.00009 * 11 10 8 35 35 H 1.09006 * 109.47045 * 59.99940 * 11 10 8 36 36 H 1.09006 * 109.47127 * 299.99699 * 12 11 10 37 37 H 1.08997 * 109.47323 * 60.00129 * 12 11 10 38 38 H 1.09005 * 109.46807 * 300.00163 * 13 12 11 39 39 H 1.08997 * 109.46984 * 59.99589 * 13 12 11 40 40 H 0.97004 * 119.99309 * 179.97438 * 17 16 14 41 41 H 1.08992 * 109.47399 * 299.99952 * 22 5 4 42 42 H 1.09004 * 109.46724 * 179.97438 * 22 5 4 43 43 H 1.09001 * 109.46812 * 179.97438 * 25 23 22 44 44 H 1.09000 * 109.47360 * 300.00293 * 25 23 22 45 45 H 1.09002 * 109.46935 * 60.00267 * 25 23 22 46 46 H 1.09002 * 109.47103 * 300.00247 * 26 2 1 47 47 H 1.09001 * 109.47066 * 60.00169 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7206 1.2497 6 1 3.9333 -1.2348 2.1395 7 7 4.0578 0.6607 1.2499 8 6 4.1861 1.3299 2.4127 9 8 3.8965 0.7872 3.4616 10 7 4.6353 2.6006 2.4130 11 6 4.7742 3.3281 3.6770 12 6 5.2981 4.7384 3.3988 13 6 5.4438 5.4980 4.7189 14 6 5.9593 6.8874 4.4448 15 1 6.1631 7.1973 3.4306 16 6 6.1708 7.7627 5.4890 17 7 6.6211 8.9749 5.2497 18 14 5.8177 7.2267 7.2431 19 1 7.0392 6.6203 7.8310 20 1 5.4135 8.4064 8.0494 21 1 4.7194 6.2271 7.2437 22 6 4.0805 -1.4416 0.0004 23 6 3.5705 -0.7204 -1.2488 24 1 3.9335 0.3074 -1.2486 25 6 4.0815 -1.4410 -2.4981 26 6 2.0400 -0.7212 -1.2491 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.6766 -0.2074 2.1393 31 1 1.6767 -1.7488 1.2493 32 1 4.2886 1.0937 0.4132 33 1 4.8666 3.0335 1.5764 34 1 3.8032 3.3920 4.1681 35 1 5.4749 2.8009 4.3246 36 1 6.2692 4.6749 2.9076 37 1 4.5972 5.2653 2.7515 38 1 4.4730 5.5615 5.2106 39 1 6.1450 4.9710 5.3659 40 1 6.7696 9.5908 5.9843 41 1 3.7176 -2.4693 0.0002 42 1 5.1706 -1.4408 0.0005 43 1 3.7178 -0.9274 -3.3880 44 1 5.1715 -1.4403 -2.4976 45 1 3.7188 -2.4689 -2.4985 46 1 1.6767 -1.7489 -1.2491 47 1 1.6768 -0.2074 -2.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246992399.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:47 Heat of formation + Delta-G solvation = -76.250109 kcal Electronic energy + Delta-G solvation = -22470.828494 eV Core-core repulsion = 19265.687926 eV Total energy + Delta-G solvation = -3205.140568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.50644 -38.79729 -35.53892 -34.20604 -33.77994 -33.26277 -31.54970 -30.09803 -26.98826 -26.90914 -26.60711 -23.13654 -22.12070 -21.13313 -20.87001 -20.41473 -19.27508 -18.12807 -16.80893 -16.15024 -15.72643 -15.47393 -15.11524 -14.78353 -14.46172 -14.29272 -13.95814 -13.80328 -13.57079 -12.95555 -12.80893 -12.68302 -12.57058 -12.27849 -12.13744 -12.03001 -11.95229 -11.87926 -11.48907 -11.11707 -11.03970 -10.87573 -10.74877 -10.48191 -10.25388 -10.21141 -9.97760 -9.79411 -9.65286 -9.21199 -9.14325 -8.61955 -8.54145 -6.05248 -4.03751 2.84145 3.32703 3.38117 3.40130 3.44984 4.29616 4.35210 4.38785 4.41810 4.45857 4.73230 4.78117 5.01880 5.07059 5.12397 5.27337 5.29089 5.31319 5.39532 5.42066 5.50561 5.54997 5.57575 5.60835 5.65537 5.72467 5.76175 5.80442 5.92073 5.97506 6.02652 6.07118 6.13343 6.18930 6.42430 6.49851 6.56307 6.73567 6.86153 7.06930 7.25687 7.38912 7.77316 8.16378 8.51573 8.77033 8.98729 9.57217 11.08049 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028540 B = 0.002749 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.843385 B =10182.625985 C =10335.112873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.126 4.126 5 C 0.165 3.835 6 H 0.087 0.913 7 N -0.743 5.743 8 C 0.700 3.300 9 O -0.595 6.595 10 N -0.743 5.743 11 C 0.134 3.866 12 C -0.113 4.113 13 C -0.011 4.011 14 C -0.521 4.521 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.904 5.904 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.264 1.264 22 C -0.122 4.122 23 C -0.093 4.093 24 H 0.068 0.932 25 C -0.147 4.147 26 C -0.108 4.108 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.392 0.608 33 H 0.394 0.606 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.019 0.981 39 H 0.014 0.986 40 H 0.263 0.737 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.668 -22.889 -15.952 29.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.088 0.912 4 C -0.165 4.165 5 C 0.060 3.940 6 H 0.105 0.895 7 N -0.400 5.400 8 C 0.400 3.600 9 O -0.473 6.473 10 N -0.397 5.397 11 C 0.010 3.990 12 C -0.151 4.151 13 C -0.049 4.049 14 C -0.559 4.559 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.188 1.188 22 C -0.160 4.160 23 C -0.112 4.112 24 H 0.086 0.914 25 C -0.205 4.205 26 C -0.146 4.146 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.227 0.773 33 H 0.227 0.773 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.884 -23.220 -14.859 28.964 hybrid contribution 0.104 0.370 0.154 0.414 sum -8.781 -22.851 -14.705 28.557 Atomic orbital electron populations 1.21816 0.95341 1.01583 1.01669 1.21086 0.95361 0.99924 0.94566 0.91161 1.22010 0.95356 1.00849 0.98276 1.20730 0.93398 0.81271 0.98617 0.89499 1.45258 1.72191 1.14930 1.07620 1.16036 0.78389 0.81464 0.84088 1.90905 1.57292 1.68512 1.30624 1.45336 1.70775 1.12595 1.11027 1.21488 1.01125 0.92497 0.83880 1.21701 1.00371 0.91995 1.00996 1.19501 0.96863 0.95927 0.92605 1.21103 1.43770 0.95563 0.95500 0.91035 1.25031 0.94501 0.94761 0.99221 1.69918 1.46041 1.06104 1.32216 0.86771 0.79361 0.78341 0.84811 1.20243 1.21395 1.18847 1.21906 1.00994 0.99643 0.93433 1.21143 0.95764 0.99632 0.94666 0.91381 1.21827 1.00986 1.00441 0.97197 1.21680 0.94531 1.00764 0.97598 0.92850 0.92860 0.92665 0.91185 0.91348 0.77304 0.77292 0.92067 0.92058 0.92206 0.92181 0.96298 0.96724 0.92717 0.90427 0.91266 0.92662 0.92624 0.92671 0.91910 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.09 -0.72 2.56 -90.63 -0.23 -0.96 16 3 H 0.07 0.64 7.60 -51.93 -0.39 0.24 16 4 C -0.13 -1.17 4.88 -26.73 -0.13 -1.30 16 5 C 0.17 1.57 2.78 -67.93 -0.19 1.38 16 6 H 0.09 1.01 7.58 -51.93 -0.39 0.61 16 7 N -0.74 -7.78 4.24 -58.68 -0.25 -8.03 16 8 C 0.70 10.36 8.53 -86.92 -0.74 9.61 16 9 O -0.59 -11.30 16.01 5.28 0.08 -11.22 16 10 N -0.74 -10.46 5.56 -65.22 -0.36 -10.82 16 11 C 0.13 2.28 5.67 -4.04 -0.02 2.25 16 12 C -0.11 -2.12 5.27 -26.73 -0.14 -2.26 16 13 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 14 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 15 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 18 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 22 C -0.12 -0.83 4.89 -26.73 -0.13 -0.96 16 23 C -0.09 -0.57 2.55 -90.59 -0.23 -0.80 16 24 H 0.07 0.42 6.51 -51.93 -0.34 0.09 16 25 C -0.15 -0.79 9.19 37.16 0.34 -0.45 16 26 C -0.11 -0.69 4.49 -26.71 -0.12 -0.81 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.39 3.20 6.88 -40.82 -0.28 2.92 16 33 H 0.39 4.45 8.49 -40.82 -0.35 4.11 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 39 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -32.83 365.56 -9.58 -42.41 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.87 Total: 0.78 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -1.80 Total: -8.72 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.16 Total: -45.99 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.83 -9.58 -42.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246992399.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.842 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds