Wall clock time and date at job start Tue Mar 31 2020 06:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47100 * 2 1 4 4 C 1.53003 * 109.47905 * 239.99405 * 2 1 3 5 5 C 1.52997 * 109.46860 * 300.00608 * 4 2 1 6 6 C 1.52999 * 109.47188 * 299.99296 * 5 4 2 7 7 H 1.08999 * 109.47091 * 300.00470 * 6 5 4 8 8 N 1.46499 * 109.47341 * 180.02562 * 6 5 4 9 9 C 1.34777 * 119.99665 * 85.27876 * 8 6 5 10 10 O 1.21583 * 120.00270 * 359.72083 * 9 8 6 11 11 N 1.34775 * 119.99585 * 179.72218 * 9 8 6 12 12 C 1.46507 * 119.99876 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.46968 * 180.02562 * 12 11 9 14 14 C 1.52994 * 109.46837 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47362 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99305 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00190 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99993 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99726 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47174 * 90.00163 * 19 17 15 21 21 H 1.48503 * 109.46751 * 209.99925 * 19 17 15 22 22 H 1.48499 * 109.47051 * 329.99766 * 19 17 15 23 23 C 1.53001 * 109.46944 * 60.00112 * 6 5 4 24 24 H 1.08999 * 109.46935 * 60.00262 * 23 6 5 25 25 C 1.53005 * 109.47302 * 180.02562 * 23 6 5 26 26 C 1.53003 * 109.47216 * 119.99249 * 2 1 3 27 27 H 1.08994 * 109.47526 * 300.00273 * 1 2 3 28 28 H 1.09004 * 109.46835 * 60.00551 * 1 2 3 29 29 H 1.09000 * 109.46729 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46570 * 59.99585 * 4 2 1 31 31 H 1.08993 * 109.47787 * 179.97438 * 4 2 1 32 32 H 1.09001 * 109.47132 * 179.97438 * 5 4 2 33 33 H 1.08999 * 109.47488 * 59.99523 * 5 4 2 34 34 H 0.97001 * 119.99790 * 264.99588 * 8 6 5 35 35 H 0.97000 * 120.00523 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47039 * 300.00042 * 12 11 9 37 37 H 1.08994 * 109.46660 * 60.00264 * 12 11 9 38 38 H 1.08998 * 109.46943 * 299.99694 * 13 12 11 39 39 H 1.08994 * 109.47116 * 60.00083 * 13 12 11 40 40 H 1.08996 * 109.47756 * 299.99976 * 14 13 12 41 41 H 1.09008 * 109.47349 * 59.99909 * 14 13 12 42 42 H 0.96996 * 119.99510 * 180.02562 * 18 17 15 43 43 H 1.08999 * 109.47167 * 60.00092 * 25 23 6 44 44 H 1.08994 * 109.47455 * 180.02562 * 25 23 6 45 45 H 1.09005 * 109.46645 * 300.00223 * 25 23 6 46 46 H 1.09000 * 109.47291 * 300.01099 * 26 2 1 47 47 H 1.08999 * 109.47531 * 180.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0402 -0.7214 -1.2491 5 6 1.5301 -2.1638 -1.2491 6 6 2.0400 -2.8850 0.0002 7 1 3.1300 -2.8850 0.0003 8 7 1.5522 -4.2664 0.0000 9 6 2.2326 -5.2212 -0.6647 10 8 3.2484 -4.9352 -1.2684 11 7 1.7868 -6.4931 -0.6602 12 6 2.5260 -7.5309 -1.3833 13 6 1.8118 -8.8740 -1.2190 14 6 2.5842 -9.9579 -1.9735 15 6 1.8812 -11.2810 -1.8112 16 1 0.9740 -11.3424 -1.2285 17 6 2.3956 -12.4127 -2.4074 18 7 3.5001 -12.3377 -3.1174 19 14 1.5237 -14.0525 -2.2068 20 1 0.5364 -14.2256 -3.3025 21 1 2.5199 -15.1526 -2.2599 22 1 0.8218 -14.0831 -0.8985 23 6 1.5300 -2.1636 1.2494 24 1 0.4400 -2.1637 1.2493 25 6 2.0404 -2.8844 2.4988 26 6 2.0400 -0.7211 1.2494 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6768 -0.2076 -2.1392 31 1 3.1301 -0.7209 -1.2493 32 1 1.8932 -2.6776 -2.1392 33 1 0.4401 -2.1638 -1.2491 34 1 0.7417 -4.4945 0.4817 35 1 0.9761 -6.7212 -0.1790 36 1 2.5743 -7.2725 -2.4411 37 1 3.5363 -7.6045 -0.9807 38 1 1.7633 -9.1326 -0.1612 39 1 0.8018 -8.8000 -1.6217 40 1 2.6333 -9.6996 -3.0313 41 1 3.5943 -10.0318 -1.5703 42 1 3.8617 -13.1339 -3.5372 43 1 3.1304 -2.8841 2.4987 44 1 1.6766 -2.3708 3.3887 45 1 1.6774 -3.9123 2.4990 46 1 1.6765 -0.2073 2.1393 47 1 3.1300 -0.7207 1.2496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247021820.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:46 Heat of formation + Delta-G solvation = -77.192096 kcal Electronic energy + Delta-G solvation = -22373.391448 eV Core-core repulsion = 19168.210033 eV Total energy + Delta-G solvation = -3205.181416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.44828 -38.93904 -35.49801 -34.58851 -33.28150 -32.78907 -31.35805 -30.24398 -27.09886 -26.83546 -26.00493 -23.28955 -22.34877 -21.36770 -20.73982 -20.30582 -19.14033 -17.78219 -16.70684 -16.17930 -15.48334 -15.41525 -15.10877 -14.63069 -14.37081 -14.28550 -14.23018 -13.73119 -13.56517 -13.14928 -12.92535 -12.43518 -12.26381 -12.26258 -12.10837 -11.78558 -11.77451 -11.56527 -11.31378 -11.11424 -10.89500 -10.70002 -10.63932 -10.57665 -10.51499 -10.30892 -9.98238 -9.83428 -9.41187 -9.10664 -9.07469 -8.53882 -8.35783 -6.00420 -4.03430 2.88049 3.31547 3.37847 3.40683 3.44379 4.31747 4.34547 4.40043 4.45907 4.59593 4.73431 4.86979 4.98269 5.14553 5.18267 5.21553 5.31449 5.35294 5.40763 5.45182 5.53181 5.59970 5.68982 5.72908 5.74922 5.83816 5.84787 5.85608 5.95009 5.98933 6.04971 6.12349 6.21980 6.26248 6.58044 6.59867 6.65591 6.85932 7.05592 7.15102 7.65700 7.78855 7.98758 8.22869 8.39741 8.83621 9.03347 9.60589 11.10917 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.041320 B = 0.002444 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.481500 B =11453.003615 C =11627.566226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 H 0.069 0.931 4 C -0.112 4.112 5 C -0.132 4.132 6 C 0.171 3.829 7 H 0.086 0.914 8 N -0.746 5.746 9 C 0.700 3.300 10 O -0.593 6.593 11 N -0.743 5.743 12 C 0.136 3.864 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.099 4.099 24 H 0.077 0.923 25 C -0.147 4.147 26 C -0.105 4.105 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.392 0.608 35 H 0.393 0.607 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.261 0.739 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.875 25.629 9.916 28.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.171 4.171 6 C 0.066 3.934 7 H 0.104 0.896 8 N -0.402 5.402 9 C 0.400 3.600 10 O -0.471 6.471 11 N -0.397 5.397 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.560 4.560 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.118 4.118 24 H 0.095 0.905 25 C -0.205 4.205 26 C -0.143 4.143 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.225 0.775 35 H 0.226 0.774 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.774 25.749 9.235 27.957 hybrid contribution -1.214 -1.233 0.458 1.790 sum -6.988 24.516 9.692 27.273 Atomic orbital electron populations 1.21943 0.95359 1.02136 1.01365 1.21140 0.95952 0.99135 0.95029 0.91224 1.21525 1.00897 0.95154 0.97411 1.21989 1.00921 0.95375 0.98833 1.20778 0.99756 0.79141 0.93747 0.89586 1.45209 1.29893 1.08074 1.56977 1.16033 0.83243 0.80773 0.79956 1.90909 1.26006 1.81534 1.48688 1.45397 1.30356 1.07017 1.56965 1.21487 0.95364 0.86079 0.95845 1.21881 0.99601 0.93134 1.01172 1.19028 0.95407 0.91599 0.95361 1.21206 1.09860 0.93079 1.31861 0.92677 1.25034 0.95023 0.99178 0.95273 1.69968 1.20543 1.29259 1.33509 0.86582 0.79333 0.83542 0.78455 1.20670 1.21211 1.19915 1.21441 1.00896 0.95106 0.94400 0.90511 1.21825 1.01569 1.00366 0.96699 1.21581 1.00911 0.94166 0.97680 0.92945 0.92882 0.92016 0.91844 0.91709 0.91247 0.91719 0.77475 0.77436 0.92053 0.92037 0.92817 0.92820 0.96260 0.96251 0.92935 0.92525 0.92679 0.92430 0.91600 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.50 37.16 0.32 -0.61 16 2 C -0.09 -0.62 3.19 -90.62 -0.29 -0.91 16 3 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 4 C -0.11 -0.90 5.45 -26.73 -0.15 -1.05 16 5 C -0.13 -1.30 5.22 -26.73 -0.14 -1.44 16 6 C 0.17 1.73 1.90 -67.93 -0.13 1.60 16 7 H 0.09 1.09 7.57 -51.93 -0.39 0.70 16 8 N -0.75 -8.17 4.39 -58.68 -0.26 -8.42 16 9 C 0.70 10.82 8.53 -86.92 -0.74 10.08 16 10 O -0.59 -11.77 16.00 5.29 0.08 -11.69 16 11 N -0.74 -10.98 5.56 -65.22 -0.36 -11.34 16 12 C 0.14 2.47 5.67 -4.04 -0.02 2.44 16 13 C -0.12 -2.37 5.27 -26.73 -0.14 -2.52 16 14 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 15 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 16 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -27.01 13.29 55.43 0.74 -26.28 16 19 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.10 -0.73 2.02 -90.61 -0.18 -0.91 16 24 H 0.08 0.51 6.43 -51.93 -0.33 0.18 16 25 C -0.15 -1.10 9.04 37.16 0.34 -0.77 16 26 C -0.11 -0.70 4.73 -26.73 -0.13 -0.82 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.40 4.81 -51.93 -0.25 0.15 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 34 H 0.39 3.22 8.40 -40.82 -0.34 2.88 16 35 H 0.39 4.62 8.49 -40.82 -0.35 4.27 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.45 7.45 -51.93 -0.39 0.07 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 365.07 15.07 5.50 5.50 Total: -1.00 -32.54 365.07 -9.83 -42.37 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.69 Total: 1.18 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -1.82 Total: -7.90 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.12 Total: -46.04 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.54 -9.83 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247021820.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.821 kcal (2) G-P(sol) polarization free energy of solvation -32.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds