Wall clock time and date at job start Tue Mar 31 2020 06:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46968 * 2 1 4 4 C 1.52996 * 109.47328 * 240.00277 * 2 1 3 5 5 C 1.53000 * 109.47328 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47233 * 59.99531 * 5 4 2 7 7 H 1.09000 * 109.46986 * 60.00203 * 6 5 4 8 8 N 1.46492 * 109.47204 * 180.02562 * 6 5 4 9 9 C 1.34780 * 120.00132 * 274.99867 * 8 6 5 10 10 O 1.21581 * 120.00041 * 0.02562 * 9 8 6 11 11 N 1.34773 * 119.99749 * 179.97438 * 9 8 6 12 12 C 1.46504 * 119.99793 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47211 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47111 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47273 * 180.02562 * 14 13 12 16 16 H 1.08008 * 119.99912 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00182 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00166 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00010 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47377 * 60.00240 * 19 17 15 21 21 H 1.48508 * 109.47080 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47119 * 299.99847 * 19 17 15 23 23 C 1.53006 * 109.46977 * 300.00464 * 6 5 4 24 24 H 1.08998 * 109.46505 * 179.97438 * 23 6 5 25 25 C 1.52997 * 109.47127 * 299.99541 * 23 6 5 26 26 C 1.52992 * 109.47223 * 60.00047 * 23 6 5 27 27 H 1.08992 * 109.47399 * 300.00026 * 1 2 3 28 28 H 1.09001 * 109.47194 * 60.00199 * 1 2 3 29 29 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46870 * 299.99783 * 4 2 1 31 31 H 1.09001 * 109.47372 * 59.99633 * 4 2 1 32 32 H 1.08992 * 109.47399 * 179.97438 * 5 4 2 33 33 H 1.09004 * 109.46724 * 300.00183 * 5 4 2 34 34 H 0.97006 * 119.99963 * 95.00252 * 8 6 5 35 35 H 0.97001 * 120.00766 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.47480 * 300.00278 * 12 11 9 37 37 H 1.09001 * 109.46719 * 60.00380 * 12 11 9 38 38 H 1.08995 * 109.47286 * 300.00593 * 13 12 11 39 39 H 1.09001 * 109.46809 * 60.00631 * 13 12 11 40 40 H 1.08995 * 109.47583 * 300.00477 * 14 13 12 41 41 H 1.09001 * 109.46715 * 60.00639 * 14 13 12 42 42 H 0.97003 * 120.00311 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.47153 * 180.02562 * 25 23 6 44 44 H 1.09001 * 109.46832 * 60.00321 * 25 23 6 45 45 H 1.09004 * 109.47261 * 300.00303 * 25 23 6 46 46 H 1.08996 * 109.47747 * 59.99547 * 26 23 6 47 47 H 1.09002 * 109.47103 * 179.97438 * 26 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2496 6 6 4.0806 -1.4414 -0.0003 7 1 3.7177 -2.4693 0.0000 8 7 5.5455 -1.4404 -0.0003 9 6 6.2201 -2.3960 -0.6697 10 8 5.6129 -3.2588 -1.2740 11 7 7.5679 -2.3947 -0.6701 12 6 8.3012 -3.4338 -1.3973 13 6 9.8053 -3.2028 -1.2381 14 6 10.5711 -4.2884 -1.9970 15 6 12.0525 -4.0613 -1.8397 16 1 12.4119 -3.2264 -1.2564 17 6 12.9491 -4.9193 -2.4405 18 7 12.5115 -5.9356 -3.1512 19 14 14.7854 -4.6382 -2.2449 20 1 15.1443 -4.6949 -0.8050 21 1 15.5288 -5.6911 -2.9826 22 1 15.1431 -3.3049 -2.7921 23 6 3.5705 -0.7202 1.2490 24 1 3.9339 -1.2340 2.1389 25 6 4.0799 0.7225 1.2487 26 6 2.0406 -0.7208 1.2493 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6767 -1.7488 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.9334 -1.2347 -2.1392 33 1 3.9329 0.3072 -1.2497 34 1 6.0300 -0.7518 0.4816 35 1 8.0524 -1.7062 -0.1883 36 1 8.0390 -4.4124 -0.9954 37 1 8.0375 -3.3925 -2.4541 38 1 10.0672 -2.2242 -1.6403 39 1 10.0693 -3.2439 -0.1813 40 1 10.3091 -5.2668 -1.5945 41 1 10.3071 -4.2478 -3.0538 42 1 13.1423 -6.5395 -3.5735 43 1 3.7169 1.2362 2.1389 44 1 3.7162 1.2360 0.3587 45 1 5.1700 0.7229 1.2485 46 1 1.6776 -1.7486 1.2494 47 1 1.6772 -0.2074 2.1395 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247021833.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:48 Heat of formation + Delta-G solvation = -76.580494 kcal Electronic energy + Delta-G solvation = -22247.696303 eV Core-core repulsion = 19042.541408 eV Total energy + Delta-G solvation = -3205.154895 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47405 -38.94524 -35.51218 -34.64837 -33.28346 -32.42843 -31.48064 -30.58338 -27.21277 -26.91795 -25.66600 -23.11027 -22.63060 -21.40867 -20.69930 -20.24001 -19.13988 -17.95871 -16.69299 -16.16061 -15.51638 -15.27507 -15.06644 -14.58564 -14.51077 -14.33280 -14.14670 -13.91626 -13.54626 -13.15997 -12.93864 -12.53622 -12.34086 -12.25302 -11.94091 -11.82717 -11.77964 -11.57265 -11.34399 -11.11769 -10.87008 -10.82433 -10.68955 -10.60405 -10.33795 -10.32918 -10.00381 -9.82984 -9.40972 -9.11658 -9.08464 -8.54329 -8.35325 -5.99987 -4.03127 2.88253 3.32980 3.37670 3.39619 3.43872 4.31912 4.34785 4.38789 4.46346 4.57082 4.69835 4.87857 4.93714 5.05358 5.20673 5.23543 5.29061 5.35320 5.35509 5.43016 5.53741 5.58662 5.62954 5.69507 5.72746 5.78888 5.85059 5.87038 5.91356 5.96898 6.02151 6.14965 6.22061 6.27531 6.58057 6.59289 6.65677 6.85855 7.05635 7.14912 7.65638 7.79072 7.98943 8.22477 8.39929 8.83261 9.03360 9.60761 11.11246 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.049469 B = 0.002352 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.874268 B =11899.878695 C =12194.376671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.132 4.132 6 C 0.171 3.829 7 H 0.086 0.914 8 N -0.748 5.748 9 C 0.699 3.301 10 O -0.593 6.593 11 N -0.743 5.743 12 C 0.135 3.865 13 C -0.120 4.120 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.894 5.894 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.099 4.099 24 H 0.075 0.925 25 C -0.152 4.152 26 C -0.105 4.105 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.392 0.608 35 H 0.393 0.607 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.065 0.935 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.516 15.211 9.610 28.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 H 0.091 0.909 4 C -0.149 4.149 5 C -0.171 4.171 6 C 0.065 3.935 7 H 0.104 0.896 8 N -0.404 5.404 9 C 0.399 3.601 10 O -0.471 6.471 11 N -0.397 5.397 12 C 0.012 3.988 13 C -0.158 4.158 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.533 5.533 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.118 4.118 24 H 0.094 0.906 25 C -0.209 4.209 26 C -0.143 4.143 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.227 0.773 35 H 0.226 0.774 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.993 14.214 8.922 28.466 hybrid contribution 1.590 0.726 0.494 1.816 sum -21.404 14.940 9.416 27.748 Atomic orbital electron populations 1.21830 0.95336 1.01851 1.01495 1.21217 0.95304 0.99915 0.94977 0.90892 1.21550 0.95055 1.00936 0.97366 1.21986 0.95443 1.00897 0.98791 1.20743 0.78394 1.00329 0.94008 0.89572 1.45295 1.06803 1.31443 1.56854 1.16053 0.82071 0.81981 0.79975 1.90907 1.67981 1.39528 1.48726 1.45398 1.04305 1.33224 1.56803 1.21490 0.92007 0.89501 0.95783 1.21885 0.91132 1.01607 1.01187 1.19022 0.94128 0.92879 0.95334 1.21169 0.91321 1.11771 1.31823 0.92724 1.25033 0.99014 0.95206 0.95258 1.69956 1.34585 1.15400 1.33319 0.86639 0.85245 0.77792 0.78182 1.20262 1.21281 1.20269 1.21375 0.96088 0.96597 0.97757 0.90620 1.21961 1.00673 0.95978 1.02322 1.21574 0.93882 1.01079 0.97805 0.92836 0.92762 0.92661 0.91711 0.91873 0.91225 0.91713 0.77340 0.77438 0.92030 0.92033 0.92809 0.92815 0.96255 0.96253 0.92878 0.92474 0.91666 0.92872 0.91608 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 2 C -0.10 -0.63 2.45 -90.62 -0.22 -0.85 16 3 H 0.07 0.47 6.43 -51.93 -0.33 0.13 16 4 C -0.11 -0.90 5.20 -26.73 -0.14 -1.03 16 5 C -0.13 -1.30 5.22 -26.73 -0.14 -1.44 16 6 C 0.17 1.74 2.15 -67.93 -0.15 1.59 16 7 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 8 N -0.75 -8.36 5.00 -58.68 -0.29 -8.65 16 9 C 0.70 10.94 8.53 -86.92 -0.74 10.20 16 10 O -0.59 -11.84 16.01 5.29 0.08 -11.76 16 11 N -0.74 -11.09 5.56 -65.22 -0.36 -11.45 16 12 C 0.14 2.47 5.67 -4.04 -0.02 2.45 16 13 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 14 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 15 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 16 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 19 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.10 -0.73 2.88 -90.62 -0.26 -0.99 16 24 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 25 C -0.15 -0.94 8.33 37.16 0.31 -0.64 16 26 C -0.11 -0.70 4.73 -26.73 -0.13 -0.82 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 34 H 0.39 3.34 6.88 -40.82 -0.28 3.06 16 35 H 0.39 4.68 8.49 -40.82 -0.35 4.33 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.06 0.41 4.81 -51.93 -0.25 0.16 16 45 H 0.05 0.31 6.50 -51.93 -0.34 -0.02 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 363.31 15.07 5.47 5.47 Total: -1.00 -32.56 363.31 -9.80 -42.36 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -8.58 Total: 1.30 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -1.84 Total: -7.59 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.08 Total: -46.38 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.56 -9.80 -42.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247021833.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.221 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds