Wall clock time and date at job start Tue Mar 31 2020 06:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47049 * 2 1 4 4 C 1.50695 * 109.47340 * 239.99314 * 2 1 3 5 5 H 1.08002 * 120.00302 * 240.00138 * 4 2 1 6 6 C 1.37880 * 119.99799 * 60.00085 * 4 2 1 7 7 N 1.31511 * 120.00202 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99567 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47359 * 90.00403 * 8 6 4 10 10 H 1.48503 * 109.47013 * 210.00082 * 8 6 4 11 11 H 1.48500 * 109.47306 * 330.00185 * 8 6 4 12 12 N 1.46907 * 109.46619 * 119.99287 * 2 1 3 13 13 C 1.46899 * 110.99599 * 176.04972 * 12 2 1 14 14 C 1.46895 * 111.00018 * 300.00043 * 12 2 1 15 15 C 1.50706 * 109.47182 * 170.00113 * 14 12 2 16 16 O 1.21283 * 119.99503 * 0.02562 * 15 14 12 17 17 N 1.34773 * 120.00081 * 179.72734 * 15 14 12 18 18 C 1.46920 * 120.63315 * 359.71657 * 17 15 14 19 19 C 1.53624 * 108.54629 * 126.37007 * 18 17 15 20 20 H 1.08997 * 109.63248 * 294.86961 * 19 18 17 21 21 C 1.52995 * 109.43753 * 174.72555 * 19 18 17 22 22 C 1.53039 * 109.23883 * 54.85831 * 19 18 17 23 23 C 1.53044 * 109.53916 * 298.51220 * 22 19 18 24 24 H 1.09004 * 109.49647 * 301.41628 * 23 22 19 25 25 C 1.52996 * 109.49790 * 181.31565 * 23 22 19 26 26 C 1.46927 * 120.62932 * 180.02562 * 17 15 14 27 27 H 1.08998 * 109.47327 * 300.00783 * 1 2 3 28 28 H 1.09000 * 109.47016 * 60.00746 * 1 2 3 29 29 H 1.09004 * 109.47412 * 179.97438 * 1 2 3 30 30 H 0.96999 * 119.99746 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.47218 * 183.95834 * 13 12 2 32 32 H 1.09004 * 109.47214 * 303.95234 * 13 12 2 33 33 H 1.08996 * 109.47566 * 63.95524 * 13 12 2 34 34 H 1.09001 * 109.47613 * 50.00459 * 14 12 2 35 35 H 1.08998 * 109.47678 * 290.00354 * 14 12 2 36 36 H 1.08997 * 109.58983 * 246.20545 * 18 17 15 37 37 H 1.09010 * 109.58497 * 6.62960 * 18 17 15 38 38 H 1.09004 * 109.47229 * 300.29705 * 21 19 18 39 39 H 1.09002 * 109.46962 * 60.28732 * 21 19 18 40 40 H 1.08995 * 109.47222 * 180.28931 * 21 19 18 41 41 H 1.08996 * 109.46168 * 178.49612 * 22 19 18 42 42 H 1.09000 * 109.46038 * 58.52908 * 22 19 18 43 43 H 1.08998 * 109.47429 * 300.16134 * 25 23 22 44 44 H 1.08998 * 109.47291 * 60.16641 * 25 23 22 45 45 H 1.09001 * 109.46976 * 180.15956 * 25 23 22 46 46 H 1.09006 * 109.58344 * 353.36569 * 26 17 15 47 47 H 1.08996 * 109.58922 * 113.79677 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9428 0.8294 -2.6035 8 14 2.3227 -1.1200 -4.0077 9 1 1.3450 -2.1620 -4.4121 10 1 2.4875 -0.1407 -5.1119 11 1 3.6310 -1.7570 -3.7115 12 7 2.0196 -0.6924 1.1996 13 6 3.4850 -0.7944 1.1873 14 6 1.5485 -0.0261 2.4211 15 6 1.8577 -0.8908 3.6161 16 8 2.4160 -1.9568 3.4650 17 7 1.5192 -0.4766 4.8532 18 6 0.8540 0.8179 5.0533 19 6 -0.4330 0.5864 5.8596 20 1 -1.1295 -0.0131 5.2735 21 6 -1.0743 1.9349 6.1931 22 6 -0.0901 -0.1507 7.1562 23 6 0.5214 -1.5137 6.8237 24 1 -0.1841 -2.0935 6.2285 25 6 0.8336 -2.2633 8.1204 26 6 1.8146 -1.3082 6.0279 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 0.7088 1.1608 -3.4845 31 1 3.8163 -1.3719 2.0503 32 1 3.8069 -1.2915 0.2722 33 1 3.9191 0.2045 1.2302 34 1 0.4721 0.1326 2.3564 35 1 2.0517 0.9348 2.5280 36 1 1.5162 1.4882 5.6014 37 1 0.6071 1.2554 4.0859 38 1 -0.3766 2.5343 6.7779 39 1 -1.3183 2.4595 5.2694 40 1 -1.9848 1.7715 6.7696 41 1 -0.9971 -0.2932 7.7436 42 1 0.6255 0.4380 7.7302 43 1 1.5379 -1.6822 8.7155 44 1 -0.0865 -2.4092 8.6863 45 1 1.2716 -3.2328 7.8831 46 1 2.2017 -2.2743 5.7037 47 1 2.5533 -0.8075 6.6537 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247681136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:41 Heat of formation + Delta-G solvation = -38.477638 kcal Electronic energy + Delta-G solvation = -23546.599120 eV Core-core repulsion = 20343.096489 eV Total energy + Delta-G solvation = -3203.502631 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.19158 -38.02579 -36.27561 -33.95505 -33.48069 -32.66998 -29.27882 -28.42618 -26.92330 -26.68893 -25.47871 -24.48014 -23.22829 -21.00670 -20.52359 -19.62019 -18.61118 -16.97618 -16.24966 -15.79483 -15.52426 -15.00684 -14.92150 -14.73862 -13.94416 -13.82936 -13.68392 -13.16172 -13.10330 -13.00808 -12.57616 -12.47804 -12.31819 -12.28533 -12.03600 -11.73451 -11.53399 -11.06663 -11.04483 -10.99514 -10.93709 -10.75938 -10.69537 -10.59824 -10.49315 -10.14570 -10.04962 -9.91953 -9.15605 -8.84253 -8.48314 -8.39412 -7.11630 -5.99464 -4.02828 3.01318 3.11246 3.34048 3.39915 3.44519 4.39943 4.44559 4.57478 4.60468 4.73771 4.92943 5.08208 5.16567 5.18677 5.29954 5.33440 5.35950 5.39704 5.47588 5.50348 5.59443 5.64585 5.70919 5.82750 5.84349 5.87695 5.89269 5.96771 6.00275 6.07121 6.25096 6.38135 6.49367 6.65837 6.80067 6.96411 7.03505 7.16708 7.48145 7.56984 7.73815 7.86364 8.21390 8.33821 8.54663 8.65344 9.04065 9.61927 11.07727 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028364 B = 0.003837 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.928659 B = 7296.255719 C = 7929.154516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.500 4.500 5 H 0.065 0.935 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.519 5.519 13 C 0.033 3.967 14 C 0.035 3.965 15 C 0.518 3.482 16 O -0.520 6.520 17 N -0.623 5.623 18 C 0.113 3.887 19 C -0.109 4.109 20 H 0.077 0.923 21 C -0.145 4.145 22 C -0.107 4.107 23 C -0.108 4.108 24 H 0.074 0.926 25 C -0.144 4.144 26 C 0.118 3.882 27 H 0.006 0.994 28 H 0.087 0.913 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.003 0.997 34 H 0.101 0.899 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.091 0.909 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.794 1.954 20.757 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.106 3.894 3 H 0.016 0.984 4 C -0.539 4.539 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.245 5.245 13 C -0.115 4.115 14 C -0.097 4.097 15 C 0.307 3.693 16 O -0.394 6.394 17 N -0.359 5.359 18 C -0.011 4.011 19 C -0.129 4.129 20 H 0.095 0.905 21 C -0.203 4.203 22 C -0.145 4.145 23 C -0.128 4.128 24 H 0.093 0.907 25 C -0.202 4.202 26 C -0.005 4.005 27 H 0.025 0.975 28 H 0.106 0.894 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.021 0.979 34 H 0.119 0.881 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.109 0.891 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.733 1.005 20.470 20.676 hybrid contribution 0.468 0.557 -0.786 1.071 sum -2.265 1.561 19.684 19.875 Atomic orbital electron populations 1.21879 0.97770 0.99798 0.99751 1.19303 0.92296 0.91989 0.85811 0.98364 1.21159 1.30894 1.12266 0.89580 0.91670 1.24921 0.95239 0.95089 0.99003 1.69886 1.37114 1.23105 1.23381 0.86497 0.79308 0.79263 0.82350 1.20655 1.21374 1.19883 1.61877 1.10265 1.51799 1.00511 1.22357 0.87848 0.98425 1.02881 1.22044 1.02590 0.94549 0.90483 1.21048 0.77678 0.87048 0.83552 1.90624 1.40830 1.23109 1.84843 1.48188 1.61058 1.20260 1.06344 1.21874 0.93113 0.84887 1.01203 1.21608 0.97036 0.97301 0.96906 0.90478 1.21770 1.00500 0.96209 1.01848 1.21641 1.00637 0.95432 0.96765 1.21526 0.97750 0.96688 0.96787 0.90715 1.21750 1.01579 1.00243 0.96584 1.21561 0.95940 0.96738 0.86260 0.97544 0.89448 0.94516 0.93026 0.91962 0.90479 0.97856 0.88077 0.93459 0.91589 0.89417 0.92561 0.92148 0.92412 0.91800 0.91871 0.92616 0.92478 0.92377 0.89099 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 8.76 37.16 0.33 -2.94 16 2 C 0.21 5.45 2.06 -68.86 -0.14 5.30 16 3 H 0.00 -0.03 8.14 -51.93 -0.42 -0.46 16 4 C -0.50 -14.03 7.88 -34.44 -0.27 -14.30 16 5 H 0.07 1.85 6.41 -52.49 -0.34 1.52 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.54 11.32 55.43 0.63 -24.92 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.52 -12.00 4.36 -237.73 -1.04 -13.04 16 13 C 0.03 0.73 8.93 60.06 0.54 1.27 16 14 C 0.03 0.65 3.61 -4.98 -0.02 0.64 16 15 C 0.52 9.25 7.42 -10.98 -0.08 9.17 16 16 O -0.52 -11.09 13.72 5.56 0.08 -11.01 16 17 N -0.62 -8.49 2.97 -172.48 -0.51 -9.01 16 18 C 0.11 1.20 5.65 -3.49 -0.02 1.18 16 19 C -0.11 -0.99 2.89 -90.28 -0.26 -1.25 16 20 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 21 C -0.15 -1.07 9.20 37.16 0.34 -0.73 16 22 C -0.11 -0.88 4.45 -26.69 -0.12 -1.00 16 23 C -0.11 -1.03 2.87 -90.48 -0.26 -1.29 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 25 C -0.14 -1.11 9.20 37.16 0.34 -0.77 16 26 C 0.12 1.39 5.72 -3.69 -0.02 1.37 16 27 H 0.01 0.12 6.20 -51.93 -0.32 -0.20 16 28 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.06 1.34 5.88 -51.93 -0.31 1.04 16 32 H 0.08 1.80 6.10 -51.93 -0.32 1.49 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 34 H 0.10 1.81 5.40 -51.93 -0.28 1.53 16 35 H 0.05 0.83 7.90 -51.93 -0.41 0.42 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.96 5.93 -51.92 -0.31 0.65 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.09 1.26 7.01 -51.93 -0.36 0.89 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 354.50 15.07 5.34 5.34 Total: -1.00 -31.09 354.50 -8.70 -39.79 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -8.43 Total: -2.01 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 0.26 Total: -1.82 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.92 Total: -46.96 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.08 Total: -11.01 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.09 -8.70 -39.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247681136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.313 kcal (2) G-P(sol) polarization free energy of solvation -31.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds