Wall clock time and date at job start Tue Mar 31 2020 06:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08991 * 109.47539 * 2 1 4 4 C 1.50703 * 109.46840 * 239.99690 * 2 1 3 5 5 H 1.07997 * 119.99753 * 240.00493 * 4 2 1 6 6 C 1.37876 * 120.00163 * 60.00325 * 4 2 1 7 7 N 1.31508 * 119.99581 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00099 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47117 * 89.99918 * 8 6 4 10 10 H 1.48500 * 109.47230 * 209.99977 * 8 6 4 11 11 H 1.48501 * 109.47250 * 330.00170 * 8 6 4 12 12 N 1.46900 * 109.46806 * 120.00030 * 2 1 3 13 13 C 1.46906 * 110.99799 * 176.04554 * 12 2 1 14 14 C 1.46902 * 110.99989 * 299.99368 * 12 2 1 15 15 C 1.50703 * 109.46981 * 170.00164 * 14 12 2 16 16 O 1.21280 * 120.00031 * 0.02562 * 15 14 12 17 17 N 1.34770 * 119.99635 * 180.02562 * 15 14 12 18 18 C 1.46931 * 120.63069 * 180.02562 * 17 15 14 19 19 C 1.53188 * 108.77881 * 126.37049 * 18 17 15 20 20 H 1.09007 * 109.49779 * 294.65538 * 19 18 17 21 21 C 1.52997 * 109.50103 * 174.58878 * 19 18 17 22 22 C 1.53044 * 109.31329 * 54.63575 * 19 18 17 23 23 C 1.53043 * 109.53891 * 298.63872 * 22 19 18 24 24 H 1.08999 * 109.49910 * 181.31250 * 23 22 19 25 25 C 1.53000 * 109.52126 * 301.39577 * 23 22 19 26 26 C 1.46931 * 120.63618 * 359.97438 * 17 15 14 27 27 H 1.08998 * 109.47019 * 300.00675 * 1 2 3 28 28 H 1.09002 * 109.47173 * 59.99885 * 1 2 3 29 29 H 1.08998 * 109.47817 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99758 * 179.97438 * 7 6 4 31 31 H 1.09001 * 109.46981 * 183.95073 * 13 12 2 32 32 H 1.09001 * 109.47200 * 303.95014 * 13 12 2 33 33 H 1.08996 * 109.47477 * 63.95231 * 13 12 2 34 34 H 1.09000 * 109.46899 * 50.00670 * 14 12 2 35 35 H 1.09003 * 109.47177 * 290.00557 * 14 12 2 36 36 H 1.09004 * 109.58382 * 6.58087 * 18 17 15 37 37 H 1.09002 * 109.58812 * 246.15959 * 18 17 15 38 38 H 1.09002 * 109.47153 * 59.99918 * 21 19 18 39 39 H 1.09001 * 109.46832 * 300.00109 * 21 19 18 40 40 H 1.09004 * 109.47261 * 180.02562 * 21 19 18 41 41 H 1.09001 * 109.45916 * 58.65609 * 22 19 18 42 42 H 1.09001 * 109.46031 * 178.61861 * 22 19 18 43 43 H 1.09009 * 109.47092 * 179.85282 * 25 23 22 44 44 H 1.09001 * 109.47111 * 299.85129 * 25 23 22 45 45 H 1.09000 * 109.47417 * 59.85591 * 25 23 22 46 46 H 1.09000 * 109.58042 * 353.41344 * 26 17 15 47 47 H 1.08997 * 109.58502 * 113.83765 * 26 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4828 7 7 0.9428 0.8295 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1405 -5.1120 11 1 3.6307 -1.7569 -3.7119 12 7 2.0196 -0.6925 1.1995 13 6 3.4850 -0.7946 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8911 3.6159 16 8 2.4161 -1.9571 3.4648 17 7 1.5141 -0.4797 4.8524 18 6 1.8094 -1.3114 6.0272 19 6 2.5873 -0.4702 7.0440 20 1 3.5587 -0.2029 6.6279 21 6 2.7864 -1.2771 8.3286 22 6 1.7976 0.8027 7.3576 23 6 1.6261 1.6267 6.0794 24 1 1.0839 2.5442 6.3079 25 6 3.0017 1.9754 5.5075 26 6 0.8380 0.8095 5.0517 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 0.7088 1.1611 -3.4844 31 1 3.8163 -1.3722 2.0501 32 1 3.8069 -1.2916 0.2720 33 1 3.9192 0.2042 1.2300 34 1 0.4722 0.1325 2.3564 35 1 2.0519 0.9347 2.5280 36 1 2.4111 -2.1689 5.7258 37 1 0.8771 -1.6558 6.4748 38 1 3.3465 -2.1849 8.1042 39 1 1.8148 -1.5430 8.7448 40 1 3.3396 -0.6779 9.0519 41 1 0.8170 0.5341 7.7507 42 1 2.3373 1.3914 8.0994 43 1 2.8786 2.5600 4.5957 44 1 3.5625 2.5570 6.2391 45 1 3.5440 1.0576 5.2801 46 1 0.7988 1.3513 4.1067 47 1 -0.1737 0.6384 5.4194 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000247681138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:44 Heat of formation + Delta-G solvation = -34.635345 kcal Electronic energy + Delta-G solvation = -23808.946021 eV Core-core repulsion = 20605.610005 eV Total energy + Delta-G solvation = -3203.336016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.33714 -38.09906 -36.27402 -33.90848 -33.12087 -32.65268 -29.27396 -28.41953 -27.09930 -26.70094 -25.49595 -24.47643 -23.23102 -21.78065 -20.18031 -19.33041 -18.29474 -17.03716 -16.21189 -15.73926 -15.48244 -15.17025 -14.89086 -14.33391 -14.26758 -13.91157 -13.64145 -13.54169 -13.27365 -12.95761 -12.55402 -12.26034 -12.22722 -12.19084 -11.82839 -11.69777 -11.58734 -11.22856 -11.05916 -10.99894 -10.91898 -10.76130 -10.65118 -10.58315 -10.34181 -10.14259 -10.04300 -9.91854 -9.16051 -8.84298 -8.45668 -8.39354 -7.11192 -5.99406 -4.02767 3.02794 3.12384 3.34056 3.39927 3.44500 4.41178 4.45162 4.55283 4.62252 4.77135 4.93624 5.01250 5.16633 5.20475 5.33440 5.34279 5.41214 5.43125 5.45440 5.53891 5.57293 5.70545 5.77013 5.81925 5.85273 5.88503 5.90573 5.95700 6.05260 6.08765 6.27626 6.38332 6.49300 6.67375 6.80318 6.96339 7.03822 7.16830 7.48586 7.57714 7.74164 7.86470 8.21614 8.34021 8.55397 8.65977 9.04166 9.62004 11.07793 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.033509 B = 0.003822 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.384459 B = 7324.336934 C = 7633.684331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.500 4.500 5 H 0.065 0.935 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.519 5.519 13 C 0.034 3.966 14 C 0.035 3.965 15 C 0.519 3.481 16 O -0.520 6.520 17 N -0.620 5.620 18 C 0.118 3.882 19 C -0.110 4.110 20 H 0.077 0.923 21 C -0.144 4.144 22 C -0.108 4.108 23 C -0.107 4.107 24 H 0.081 0.919 25 C -0.149 4.149 26 C 0.111 3.889 27 H 0.006 0.994 28 H 0.087 0.913 29 H 0.036 0.964 30 H 0.260 0.740 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.003 0.997 34 H 0.101 0.899 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.421 2.943 20.774 20.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.106 3.894 3 H 0.016 0.984 4 C -0.539 4.539 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.244 5.244 13 C -0.115 4.115 14 C -0.096 4.096 15 C 0.307 3.693 16 O -0.395 6.395 17 N -0.355 5.355 18 C -0.005 4.005 19 C -0.129 4.129 20 H 0.095 0.905 21 C -0.202 4.202 22 C -0.145 4.145 23 C -0.127 4.127 24 H 0.099 0.901 25 C -0.206 4.206 26 C -0.012 4.012 27 H 0.025 0.975 28 H 0.106 0.894 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.021 0.979 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.106 0.894 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.458 1.987 20.486 20.587 hybrid contribution 0.487 0.592 -0.776 1.091 sum 0.945 2.579 19.710 19.900 Atomic orbital electron populations 1.21881 0.97777 0.99805 0.99759 1.19298 0.92290 0.91974 0.85819 0.98384 1.21160 1.30888 1.12255 0.89585 0.91678 1.24919 0.95242 0.95090 0.99003 1.69886 1.37122 1.23102 1.23383 0.86498 0.79306 0.79265 0.82358 1.20652 1.21376 1.19887 1.61877 1.10239 1.51800 1.00518 1.22352 0.87868 0.98389 1.02853 1.22047 1.02578 0.94546 0.90477 1.21020 0.77587 0.87066 0.83583 1.90624 1.40890 1.23131 1.84834 1.48136 1.60725 1.20419 1.06269 1.21548 0.99508 0.94170 0.85263 1.21561 0.99937 0.95626 0.95778 0.90453 1.21760 1.01741 1.00023 0.96688 1.21599 1.00302 0.95846 0.96770 1.21495 0.97347 0.98386 0.95439 0.90093 1.21867 0.96354 1.01694 1.00688 1.21759 0.95267 0.84049 1.00169 0.97540 0.89446 0.94507 0.93028 0.91979 0.90512 0.97893 0.88150 0.93438 0.89156 0.92064 0.92420 0.92605 0.92536 0.91834 0.91850 0.92551 0.92810 0.92145 0.89403 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.76 37.16 0.33 -2.95 16 2 C 0.21 5.44 2.06 -68.86 -0.14 5.30 16 3 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 4 C -0.50 -14.02 7.88 -34.44 -0.27 -14.29 16 5 H 0.07 1.85 6.41 -52.49 -0.34 1.51 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.55 11.32 55.43 0.63 -24.92 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.52 -11.95 4.36 -237.72 -1.04 -12.99 16 13 C 0.03 0.74 8.93 60.07 0.54 1.28 16 14 C 0.04 0.65 3.61 -4.97 -0.02 0.63 16 15 C 0.52 9.15 7.42 -10.99 -0.08 9.07 16 16 O -0.52 -11.02 13.72 5.56 0.08 -10.94 16 17 N -0.62 -8.27 2.41 -172.79 -0.42 -8.69 16 18 C 0.12 1.37 5.72 -3.71 -0.02 1.35 16 19 C -0.11 -1.01 2.53 -90.50 -0.23 -1.24 16 20 H 0.08 0.82 6.34 -51.93 -0.33 0.49 16 21 C -0.14 -1.09 9.20 37.16 0.34 -0.75 16 22 C -0.11 -0.86 4.71 -26.69 -0.13 -0.98 16 23 C -0.11 -0.93 3.21 -90.53 -0.29 -1.22 16 24 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 25 C -0.15 -1.46 8.71 37.16 0.32 -1.14 16 26 C 0.11 1.16 5.73 -3.74 -0.02 1.14 16 27 H 0.01 0.12 6.20 -51.93 -0.32 -0.20 16 28 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 29 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.06 1.33 5.88 -51.93 -0.31 1.03 16 32 H 0.08 1.79 6.10 -51.93 -0.32 1.48 16 33 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 34 H 0.10 1.80 5.63 -51.93 -0.29 1.50 16 35 H 0.05 0.83 7.67 -51.93 -0.40 0.43 16 36 H 0.09 1.24 7.01 -51.93 -0.36 0.87 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.71 5.97 -51.93 -0.31 0.40 16 46 H 0.09 0.95 5.93 -51.93 -0.31 0.64 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 349.81 15.07 5.27 5.27 Total: -1.00 -31.01 349.81 -8.50 -39.50 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -8.23 Total: -1.63 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 0.23 Total: -2.27 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.83 Total: -46.60 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.01 -8.50 -39.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000247681138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.867 kcal (2) G-P(sol) polarization free energy of solvation -31.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds